Wall clock time and date at job start Wed Apr 1 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35677 * 116.99879 * 2 1 4 4 C 1.38898 * 119.62159 * 180.02562 * 3 2 1 5 5 C 1.39573 * 118.94722 * 179.97438 * 4 3 2 6 6 C 1.48164 * 120.89468 * 180.02562 * 5 4 3 7 7 O 1.21510 * 120.00129 * 146.77442 * 6 5 4 8 8 N 1.34774 * 119.99607 * 326.77176 * 6 5 4 9 9 C 1.46927 * 120.63283 * 2.60247 * 8 6 5 10 10 C 1.52757 * 109.01037 * 233.58643 * 9 8 6 11 11 C 1.53042 * 109.38265 * 305.58635 * 10 9 8 12 12 C 1.53036 * 109.53504 * 61.24340 * 11 10 9 13 13 C 1.46924 * 120.63326 * 182.88794 * 8 6 5 14 14 H 1.09007 * 109.58638 * 246.16068 * 13 8 6 15 15 C 1.53007 * 109.58199 * 6.57567 * 13 8 6 16 16 N 1.46501 * 109.46707 * 178.36928 * 15 13 8 17 17 C 1.46501 * 120.00114 * 83.81705 * 16 15 13 18 18 C 1.36942 * 119.99784 * 263.81717 * 16 15 13 19 19 H 1.08000 * 120.00009 * 2.14834 * 18 16 15 20 20 C 1.38814 * 119.99795 * 182.15577 * 18 16 15 21 21 N 1.31620 * 120.00122 * 6.20265 * 20 18 16 22 22 Si 1.86793 * 119.99867 * 186.21030 * 20 18 16 23 23 H 1.48498 * 109.47391 * 89.99654 * 22 20 18 24 24 H 1.48503 * 109.47275 * 209.99358 * 22 20 18 25 25 H 1.48497 * 109.47213 * 329.99542 * 22 20 18 26 26 C 1.39967 * 118.21572 * 359.97438 * 5 4 3 27 27 C 1.37983 * 119.13675 * 0.02562 * 26 5 4 28 28 C 1.50695 * 119.51414 * 179.97438 * 27 26 5 29 29 N 1.31905 * 120.97325 * 359.74269 * 27 26 5 30 30 H 1.09001 * 109.46751 * 299.99666 * 1 2 3 31 31 H 1.08990 * 109.47136 * 60.00346 * 1 2 3 32 32 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.52447 * 359.97438 * 4 3 2 34 34 H 1.09007 * 109.58701 * 353.42025 * 9 8 6 35 35 H 1.08993 * 109.58664 * 113.84112 * 9 8 6 36 36 H 1.09005 * 109.56395 * 185.55257 * 10 9 8 37 37 H 1.09000 * 109.36311 * 65.50095 * 10 9 8 38 38 H 1.08996 * 109.45740 * 301.21732 * 11 10 9 39 39 H 1.09003 * 109.46203 * 181.26348 * 11 10 9 40 40 H 1.09008 * 109.49559 * 178.68711 * 12 11 10 41 41 H 1.08995 * 109.50436 * 58.58564 * 12 11 10 42 42 H 1.08997 * 109.47205 * 298.36754 * 15 13 8 43 43 H 1.08999 * 109.46839 * 58.37007 * 15 13 8 44 44 H 1.09000 * 109.46983 * 356.55441 * 17 16 15 45 45 H 1.09008 * 109.46904 * 116.55409 * 17 16 15 46 46 H 1.08993 * 109.47481 * 236.55096 * 17 16 15 47 47 H 0.96998 * 120.00416 * 180.02562 * 21 20 18 48 48 H 1.08007 * 120.43295 * 179.97438 * 26 5 4 49 49 H 1.08995 * 109.47006 * 89.99729 * 28 27 26 50 50 H 1.08994 * 109.47440 * 210.00192 * 28 27 26 51 51 H 1.08998 * 109.47166 * 330.00188 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5235 -0.0011 6 6 5.5284 2.6415 -0.0022 7 8 6.0634 3.5674 -0.5793 8 7 6.2783 1.7220 0.6368 9 6 5.6494 0.5662 1.2906 10 6 6.1144 0.5029 2.7443 11 6 7.6442 0.4949 2.7883 12 6 8.1809 1.7846 2.1634 13 6 7.7398 1.8594 0.6984 14 1 8.2068 1.0520 0.1343 15 6 8.1534 3.2083 0.1064 16 7 9.6073 3.3594 0.2044 17 6 10.4753 2.7742 -0.8205 18 6 10.1549 4.0476 1.2541 19 1 9.5174 4.4491 2.0279 20 6 11.5294 4.2292 1.3234 21 7 12.2948 3.8484 0.3226 22 14 12.2926 5.0138 2.8370 23 1 12.6323 3.9577 3.8241 24 1 13.5265 5.7428 2.4479 25 1 11.3259 5.9647 3.4424 26 6 3.2394 3.6635 -0.0016 27 6 1.8680 3.5116 -0.0010 28 6 0.9857 4.7332 -0.0010 29 7 1.3178 2.3127 -0.0051 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.0230 0.3682 -0.0005 34 1 4.5651 0.6741 1.2597 35 1 5.9424 -0.3488 0.7760 36 1 5.7322 -0.4052 3.2106 37 1 5.7395 1.3739 3.2819 38 1 8.0190 -0.3628 2.2298 39 1 7.9774 0.4271 3.8240 40 1 9.2697 1.7887 2.2162 41 1 7.7866 2.6435 2.7064 42 1 7.8532 3.2531 -0.9405 43 1 7.6665 4.0121 0.6586 44 1 9.8692 2.2181 -1.5356 45 1 11.0117 3.5689 -1.3392 46 1 11.1909 2.1006 -0.3492 47 1 13.2553 3.9749 0.3712 48 1 3.6806 4.6494 -0.0016 49 1 0.7726 5.0275 -1.0286 50 1 0.0517 4.5069 0.5133 51 1 1.4947 5.5490 0.5124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158404771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:46 Heat of formation + Delta-G solvation = 31.248535 kcal Electronic energy + Delta-G solvation = -31981.973342 eV Core-core repulsion = 27884.481600 eV Total energy + Delta-G solvation = -4097.491742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32594 -40.04582 -38.24901 -37.15849 -35.61244 -33.89674 -32.43441 -32.08690 -31.58759 -29.98625 -28.68088 -26.95373 -26.66008 -25.85231 -24.75351 -23.86115 -22.88454 -22.27431 -20.66700 -20.38943 -19.27766 -18.09029 -17.14049 -16.81439 -16.41108 -16.27504 -16.15855 -15.57548 -15.13927 -14.73235 -14.48307 -14.39703 -14.28631 -13.99111 -13.72005 -13.45211 -13.28163 -13.11270 -12.82136 -12.78304 -12.67989 -12.47573 -12.37724 -12.12937 -11.95779 -11.51970 -11.32898 -11.11352 -11.04129 -10.73632 -10.67660 -10.58493 -10.37692 -10.30357 -10.08013 -10.03044 -9.92352 -9.73244 -9.67295 -8.95770 -8.63674 -8.42929 -8.27499 -6.77013 -5.53025 -2.94830 0.58196 0.88998 2.69614 2.83137 3.07273 3.43420 3.49480 3.51074 3.55170 3.85311 4.30825 4.58991 4.65136 4.72130 4.82784 4.90500 4.96048 5.00238 5.01040 5.11617 5.15313 5.26273 5.31252 5.33890 5.40093 5.51224 5.55079 5.57371 5.64751 5.68300 5.73978 5.86931 5.93255 5.97090 6.02743 6.08086 6.16033 6.20832 6.45997 6.50323 6.71230 6.89508 6.91390 6.95143 7.03598 7.29382 7.54884 7.57672 7.75133 7.81431 8.04668 8.29511 8.50411 9.38563 10.03502 10.46781 11.46013 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002832 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.141474 B = 9883.500868 C =10522.781587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.320 3.680 4 C -0.184 4.184 5 C -0.037 4.037 6 C 0.552 3.448 7 O -0.508 6.508 8 N -0.590 5.590 9 C 0.071 3.929 10 C -0.133 4.133 11 C -0.122 4.122 12 C -0.117 4.117 13 C 0.121 3.879 14 H 0.065 0.935 15 C 0.164 3.836 16 N -0.611 5.611 17 C 0.169 3.831 18 C -0.234 4.234 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.919 5.919 22 Si 0.903 3.097 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.157 4.157 27 C 0.165 3.835 28 C -0.104 4.104 29 N -0.532 5.532 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.055 0.945 44 H -0.011 1.011 45 H 0.045 0.955 46 H 0.036 0.964 47 H 0.248 0.752 48 H 0.149 0.851 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.201 -8.298 1.434 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.141 3.859 4 C -0.205 4.205 5 C -0.048 4.048 6 C 0.338 3.662 7 O -0.384 6.384 8 N -0.324 5.324 9 C -0.051 4.051 10 C -0.171 4.171 11 C -0.160 4.160 12 C -0.156 4.156 13 C 0.017 3.983 14 H 0.083 0.917 15 C 0.036 3.964 16 N -0.335 5.335 17 C 0.025 3.975 18 C -0.364 4.364 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.734 3.266 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.178 4.178 27 C 0.029 3.971 28 C -0.161 4.161 29 N -0.257 5.257 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.180 0.820 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.007 0.993 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.167 0.833 49 H 0.101 0.899 50 H 0.096 0.904 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.468 -8.111 1.088 25.801 hybrid contribution 1.150 0.267 1.001 1.548 sum -23.318 -7.844 2.089 24.691 Atomic orbital electron populations 1.22857 0.77127 1.02959 1.02481 1.86246 1.22984 1.24211 1.87910 1.19613 0.88939 0.84670 0.92641 1.21638 0.92304 0.99250 1.07309 1.20368 0.94733 0.92999 0.96654 1.18130 0.85288 0.82726 0.80043 1.90905 1.71289 1.32625 1.43531 1.48295 1.08213 1.23387 1.52467 1.22610 0.99852 0.88915 0.93726 1.21837 0.97352 1.02032 0.95880 1.21594 0.94344 0.99116 1.00948 1.21861 1.03219 0.96043 0.94434 1.22634 0.75431 1.02930 0.97294 0.91676 1.21393 0.83748 0.91728 0.99498 1.44324 1.00198 1.62155 1.26811 1.21000 0.90899 0.96537 0.89041 1.19322 0.90393 1.26874 0.99765 0.91015 1.24830 0.96470 1.01324 0.97874 1.70217 1.03818 1.53028 1.29749 0.86242 0.78855 0.78766 0.82689 1.21774 1.21868 1.20801 1.21914 0.93228 0.99749 1.02901 1.20873 0.91640 0.91826 0.92780 1.20759 0.99013 0.92824 1.03528 1.66960 1.41207 0.98469 1.19065 0.92283 0.92275 0.88586 0.82019 0.87568 0.91094 0.91210 0.91754 0.92208 0.92118 0.88528 0.92345 0.91783 0.92707 0.99274 0.93609 0.94548 0.94139 0.83350 0.89942 0.90362 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.14 10.47 -18.73 -0.20 -3.34 16 3 C 0.32 3.68 7.49 -17.16 -0.13 3.55 16 4 C -0.18 -2.13 7.50 -38.84 -0.29 -2.42 16 5 C -0.04 -0.49 5.54 -104.68 -0.58 -1.07 16 6 C 0.55 8.93 7.36 -12.18 -0.09 8.84 16 7 O -0.51 -10.00 12.34 5.36 0.07 -9.93 16 8 N -0.59 -9.02 2.98 -166.47 -0.50 -9.52 16 9 C 0.07 0.82 4.98 -3.93 -0.02 0.80 16 10 C -0.13 -1.51 6.06 -26.83 -0.16 -1.67 16 11 C -0.12 -1.66 5.89 -26.69 -0.16 -1.82 16 12 C -0.12 -2.08 4.64 -26.62 -0.12 -2.20 16 13 C 0.12 2.23 3.21 -67.60 -0.22 2.01 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.16 3.66 3.54 -4.04 -0.01 3.65 16 16 N -0.61 -15.79 2.59 -181.11 -0.47 -16.26 16 17 C 0.17 4.40 8.99 59.85 0.54 4.94 16 18 C -0.23 -6.46 8.31 -15.06 -0.13 -6.59 16 19 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 20 C -0.01 -0.27 5.43 -17.43 -0.09 -0.36 16 21 N -0.92 -27.15 9.49 55.49 0.53 -26.63 16 22 Si 0.90 22.30 29.56 -169.99 -5.02 17.28 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C -0.16 -1.90 9.33 -39.03 -0.36 -2.26 16 27 C 0.16 1.76 6.77 -82.66 -0.56 1.20 16 28 C -0.10 -0.76 10.16 36.00 0.37 -0.39 16 29 N -0.53 -6.06 9.09 -9.60 -0.09 -6.14 16 30 H 0.06 0.42 8.11 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.16 1.63 5.43 -52.48 -0.28 1.35 16 34 H 0.11 1.10 3.50 -52.49 -0.18 0.91 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 2.02 7.02 -51.92 -0.36 1.66 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.51 6.24 -51.93 -0.32 1.18 16 43 H 0.05 1.30 7.00 -51.93 -0.36 0.94 16 44 H -0.01 -0.27 7.90 -51.93 -0.41 -0.68 16 45 H 0.05 1.30 6.94 -51.92 -0.36 0.94 16 46 H 0.04 1.00 7.15 -51.93 -0.37 0.62 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.15 1.73 8.03 -52.48 -0.42 1.31 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -32.33 394.44 -8.83 -41.16 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.12 Total: -0.11 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.97 Total: 7.55 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.53 Total: -58.55 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.13 Total: -13.27 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.33 -8.83 -41.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158404771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.410 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds