Wall clock time and date at job start Wed Apr 1 2020 04:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35677 * 116.99879 * 2 1 4 4 C 1.38898 * 119.62159 * 180.02562 * 3 2 1 5 5 C 1.39573 * 118.94722 * 179.97438 * 4 3 2 6 6 C 1.48164 * 120.89468 * 180.02562 * 5 4 3 7 7 O 1.21510 * 120.00129 * 146.77442 * 6 5 4 8 8 N 1.34774 * 119.99607 * 326.77176 * 6 5 4 9 9 C 1.46927 * 120.63283 * 2.60247 * 8 6 5 10 10 C 1.52757 * 109.01037 * 233.58643 * 9 8 6 11 11 C 1.53042 * 109.38265 * 305.58635 * 10 9 8 12 12 C 1.53036 * 109.53504 * 61.24340 * 11 10 9 13 13 C 1.46924 * 120.63326 * 182.88794 * 8 6 5 14 14 H 1.09007 * 109.58638 * 246.16068 * 13 8 6 15 15 C 1.53007 * 109.58199 * 6.57567 * 13 8 6 16 16 N 1.46501 * 109.46707 * 178.36928 * 15 13 8 17 17 C 1.46501 * 120.00114 * 83.81705 * 16 15 13 18 18 C 1.36942 * 119.99784 * 263.81717 * 16 15 13 19 19 H 1.08000 * 120.00009 * 2.14834 * 18 16 15 20 20 C 1.38814 * 119.99795 * 182.15577 * 18 16 15 21 21 N 1.31620 * 120.00122 * 6.20265 * 20 18 16 22 22 Si 1.86793 * 119.99867 * 186.21030 * 20 18 16 23 23 H 1.48498 * 109.47391 * 89.99654 * 22 20 18 24 24 H 1.48503 * 109.47275 * 209.99358 * 22 20 18 25 25 H 1.48497 * 109.47213 * 329.99542 * 22 20 18 26 26 C 1.39967 * 118.21572 * 359.97438 * 5 4 3 27 27 C 1.37983 * 119.13675 * 0.02562 * 26 5 4 28 28 C 1.50695 * 119.51414 * 179.97438 * 27 26 5 29 29 N 1.31905 * 120.97325 * 359.74269 * 27 26 5 30 30 H 1.09001 * 109.46751 * 299.99666 * 1 2 3 31 31 H 1.08990 * 109.47136 * 60.00346 * 1 2 3 32 32 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.52447 * 359.97438 * 4 3 2 34 34 H 1.09007 * 109.58701 * 353.42025 * 9 8 6 35 35 H 1.08993 * 109.58664 * 113.84112 * 9 8 6 36 36 H 1.09005 * 109.56395 * 185.55257 * 10 9 8 37 37 H 1.09000 * 109.36311 * 65.50095 * 10 9 8 38 38 H 1.08996 * 109.45740 * 301.21732 * 11 10 9 39 39 H 1.09003 * 109.46203 * 181.26348 * 11 10 9 40 40 H 1.09008 * 109.49559 * 178.68711 * 12 11 10 41 41 H 1.08995 * 109.50436 * 58.58564 * 12 11 10 42 42 H 1.08997 * 109.47205 * 298.36754 * 15 13 8 43 43 H 1.08999 * 109.46839 * 58.37007 * 15 13 8 44 44 H 1.09000 * 109.46983 * 356.55441 * 17 16 15 45 45 H 1.09008 * 109.46904 * 116.55409 * 17 16 15 46 46 H 1.08993 * 109.47481 * 236.55096 * 17 16 15 47 47 H 0.96998 * 120.00416 * 180.02562 * 21 20 18 48 48 H 1.08007 * 120.43295 * 179.97438 * 26 5 4 49 49 H 1.08995 * 109.47006 * 89.99729 * 28 27 26 50 50 H 1.08994 * 109.47440 * 210.00192 * 28 27 26 51 51 H 1.08998 * 109.47166 * 330.00188 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5235 -0.0011 6 6 5.5284 2.6415 -0.0022 7 8 6.0634 3.5674 -0.5793 8 7 6.2783 1.7220 0.6368 9 6 5.6494 0.5662 1.2906 10 6 6.1144 0.5029 2.7443 11 6 7.6442 0.4949 2.7883 12 6 8.1809 1.7846 2.1634 13 6 7.7398 1.8594 0.6984 14 1 8.2068 1.0520 0.1343 15 6 8.1534 3.2083 0.1064 16 7 9.6073 3.3594 0.2044 17 6 10.4753 2.7742 -0.8205 18 6 10.1549 4.0476 1.2541 19 1 9.5174 4.4491 2.0279 20 6 11.5294 4.2292 1.3234 21 7 12.2948 3.8484 0.3226 22 14 12.2926 5.0138 2.8370 23 1 12.6323 3.9577 3.8241 24 1 13.5265 5.7428 2.4479 25 1 11.3259 5.9647 3.4424 26 6 3.2394 3.6635 -0.0016 27 6 1.8680 3.5116 -0.0010 28 6 0.9857 4.7332 -0.0010 29 7 1.3178 2.3127 -0.0051 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.0230 0.3682 -0.0005 34 1 4.5651 0.6741 1.2597 35 1 5.9424 -0.3488 0.7760 36 1 5.7322 -0.4052 3.2106 37 1 5.7395 1.3739 3.2819 38 1 8.0190 -0.3628 2.2298 39 1 7.9774 0.4271 3.8240 40 1 9.2697 1.7887 2.2162 41 1 7.7866 2.6435 2.7064 42 1 7.8532 3.2531 -0.9405 43 1 7.6665 4.0121 0.6586 44 1 9.8692 2.2181 -1.5356 45 1 11.0117 3.5689 -1.3392 46 1 11.1909 2.1006 -0.3492 47 1 13.2553 3.9749 0.3712 48 1 3.6806 4.6494 -0.0016 49 1 0.7726 5.0275 -1.0286 50 1 0.0517 4.5069 0.5133 51 1 1.4947 5.5490 0.5124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158404771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:44 Heat of formation + Delta-G solvation = 10.645772 kcal Electronic energy + Delta-G solvation = -31982.866744 eV Core-core repulsion = 27884.481600 eV Total energy + Delta-G solvation = -4098.385145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.34618 -41.17159 -39.10811 -38.43298 -37.44597 -35.07465 -33.80219 -33.25123 -32.79049 -31.61707 -29.40101 -28.14599 -28.00088 -27.64496 -26.17688 -24.91404 -23.85766 -23.72549 -22.16705 -21.74239 -20.42762 -19.06083 -18.79105 -18.09006 -17.53304 -17.28253 -17.09264 -16.91594 -16.62460 -16.30246 -15.53443 -15.41943 -15.31144 -15.16277 -15.03175 -14.93068 -14.58408 -14.50574 -14.14761 -14.04191 -13.79538 -13.43259 -13.35919 -13.19253 -13.05812 -12.87500 -12.68544 -12.66544 -12.60259 -12.21714 -12.12838 -12.01210 -11.97397 -11.88222 -11.73681 -11.55959 -11.42781 -11.00200 -10.91013 -10.63685 -10.28461 -9.60989 -9.47255 -8.88287 -7.70539 -5.14745 -0.38306 0.00816 1.45334 1.46343 1.55100 1.60877 1.77399 2.06166 2.53087 2.60973 3.06095 3.26815 3.39166 3.72501 3.81081 3.85621 3.88507 3.94478 4.00554 4.04872 4.12676 4.33897 4.37851 4.42621 4.47179 4.48163 4.53719 4.58487 4.67739 4.77605 4.78241 4.80006 4.81729 4.87367 4.94889 4.97415 5.01956 5.07108 5.13604 5.14375 5.27898 5.32729 5.34784 5.49666 5.54360 5.60149 5.68938 5.84595 6.13955 6.29899 6.36056 6.69420 7.01921 7.20490 7.93267 8.32899 9.27594 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002832 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.141474 B = 9883.500868 C =10522.781587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.318 3.682 4 C -0.182 4.182 5 C -0.047 4.047 6 C 0.548 3.452 7 O -0.554 6.554 8 N -0.589 5.589 9 C 0.067 3.933 10 C -0.126 4.126 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.134 3.866 14 H 0.064 0.936 15 C 0.175 3.825 16 N -0.625 5.625 17 C 0.188 3.812 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.274 1.274 26 C -0.169 4.169 27 C 0.169 3.831 28 C -0.102 4.102 29 N -0.534 5.534 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.179 0.821 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.017 0.983 47 H 0.243 0.757 48 H 0.145 0.855 49 H 0.094 0.906 50 H 0.088 0.912 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.080 -10.062 2.802 29.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.218 6.218 3 C 0.139 3.861 4 C -0.202 4.202 5 C -0.058 4.058 6 C 0.336 3.664 7 O -0.433 6.433 8 N -0.321 5.321 9 C -0.053 4.053 10 C -0.164 4.164 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.029 3.971 14 H 0.082 0.918 15 C 0.049 3.951 16 N -0.350 5.350 17 C 0.044 3.956 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.257 4.257 21 N -0.598 5.598 22 Si 0.797 3.203 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.199 1.199 26 C -0.190 4.190 27 C 0.032 3.968 28 C -0.159 4.159 29 N -0.260 5.260 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.195 0.805 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.053 0.947 48 H 0.163 0.837 49 H 0.112 0.888 50 H 0.107 0.893 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -27.419 -9.920 2.482 29.264 hybrid contribution 1.879 0.807 0.525 2.112 sum -25.540 -9.112 3.007 27.283 Atomic orbital electron populations 1.23112 0.75454 1.04880 1.02451 1.86245 1.24611 1.23390 1.87537 1.19749 0.89040 0.85209 0.92105 1.21673 0.92673 0.98910 1.06970 1.20073 0.92644 0.94385 0.98683 1.18598 0.86668 0.81952 0.79138 1.90873 1.72475 1.34451 1.45534 1.48270 1.06784 1.24532 1.52483 1.22948 1.00653 0.87913 0.93826 1.21831 0.95288 1.03580 0.95739 1.21550 0.96111 0.96584 1.01139 1.21690 1.00908 0.98122 0.94067 1.22044 0.77765 0.99869 0.97409 0.91821 1.21259 0.81650 0.93464 0.98739 1.44520 1.01568 1.62404 1.26496 1.20653 0.90723 0.95202 0.89040 1.19519 0.90629 1.26513 0.99913 0.91169 1.25587 0.96928 1.02539 1.00653 1.70414 1.03582 1.54448 1.31399 0.85227 0.77642 0.77986 0.79427 1.21043 1.22302 1.19905 1.22012 0.93998 0.99401 1.03581 1.21320 0.91396 0.92735 0.91326 1.20864 0.98869 0.91644 1.04553 1.67073 1.41226 0.98644 1.19065 0.92136 0.92444 0.85778 0.80454 0.85799 0.88904 0.87508 0.92471 0.91269 0.91129 0.92202 0.93969 0.93101 0.94752 0.96883 0.96636 0.96450 0.94700 0.83734 0.88800 0.89342 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 113.37 1.18 1.58 16 2 O -0.31 -5.47 10.47 -89.95 -0.94 -6.41 16 3 C 0.32 6.56 7.49 84.80 0.63 7.19 16 4 C -0.18 -3.81 7.50 22.75 0.17 -3.64 16 5 C -0.05 -1.22 5.54 -19.90 -0.11 -1.33 16 6 C 0.55 17.88 7.36 86.88 0.64 18.52 16 7 O -0.55 -22.79 12.34 -3.75 -0.05 -22.84 16 8 N -0.59 -17.60 2.98 -798.88 -2.38 -19.98 16 9 C 0.07 1.35 4.98 86.22 0.43 1.78 16 10 C -0.13 -2.46 6.06 30.53 0.19 -2.27 16 11 C -0.12 -2.92 5.89 30.62 0.18 -2.74 16 12 C -0.11 -3.91 4.64 30.67 0.14 -3.77 16 13 C 0.13 4.98 3.21 44.98 0.14 5.13 16 14 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 15 C 0.17 8.15 3.54 86.38 0.31 8.45 16 16 N -0.62 -33.60 2.59 -726.91 -1.88 -35.48 16 17 C 0.19 10.17 8.99 127.77 1.15 11.32 16 18 C -0.24 -13.46 8.31 84.03 0.70 -12.76 16 19 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 20 C -0.06 -3.75 5.43 84.86 0.46 -3.29 16 21 N -0.95 -57.86 9.49 21.65 0.21 -57.65 16 22 Si 0.97 46.80 29.56 68.60 2.03 48.83 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 26 C -0.17 -4.00 9.33 22.63 0.21 -3.79 16 27 C 0.17 3.33 6.77 42.49 0.29 3.62 16 28 C -0.10 -1.28 10.16 71.23 0.72 -0.55 16 29 N -0.53 -11.02 9.09 -297.18 -2.70 -13.72 16 30 H 0.06 0.68 8.11 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.18 3.05 5.43 -2.91 -0.02 3.03 16 34 H 0.12 2.15 3.50 -2.91 -0.01 2.14 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 2.58 7.02 -2.38 -0.02 2.57 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 2.51 6.24 -2.39 -0.01 2.49 16 43 H 0.03 1.72 7.00 -2.39 -0.02 1.70 16 44 H 0.01 0.61 7.90 -2.39 -0.02 0.59 16 45 H 0.02 0.91 6.94 -2.38 -0.02 0.89 16 46 H 0.02 0.98 7.15 -2.39 -0.02 0.96 16 47 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.14 3.45 8.03 -2.91 -0.02 3.42 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.09 0.96 8.07 -2.39 -0.02 0.94 16 Total: -1.00 -73.21 394.44 2.64 -70.58 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.92 Total: 13.23 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.43 Total: 23.46 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -6.76 Total: -126.84 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.99 Total: -29.25 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -73.21 2.64 -70.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158404771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.223 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds