Wall clock time and date at job start Wed Apr 1 2020 04:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00584 * 2 1 4 4 C 1.52994 * 109.47467 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46278 * 60.02842 * 4 3 2 6 6 N 1.46503 * 109.46639 * 299.97330 * 5 4 3 7 7 C 1.34775 * 119.99463 * 179.97438 * 6 5 4 8 8 O 1.21512 * 120.00187 * 0.02562 * 7 6 5 9 9 C 1.48176 * 119.99635 * 179.97438 * 7 6 5 10 10 C 1.39311 * 119.71902 * 179.97438 * 9 7 6 11 11 C 1.38590 * 119.05724 * 179.97438 * 10 9 7 12 12 C 1.38628 * 118.48729 * 0.02562 * 11 10 9 13 13 C 1.38557 * 119.35501 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.55254 * 179.97438 * 13 12 11 15 15 N 1.31529 * 120.89779 * 359.73874 * 13 12 11 16 16 C 1.53043 * 109.45847 * 180.02562 * 4 3 2 17 17 C 1.53188 * 109.31445 * 58.64166 * 16 4 3 18 18 N 1.46925 * 108.77701 * 54.63452 * 17 16 4 19 19 C 1.36933 * 120.63218 * 126.36931 * 18 17 16 20 20 H 1.07998 * 120.00198 * 332.45537 * 19 18 17 21 21 C 1.38819 * 119.99952 * 152.17898 * 19 18 17 22 22 N 1.31617 * 120.00072 * 343.15781 * 21 19 18 23 23 Si 1.86804 * 119.99834 * 163.15974 * 21 19 18 24 24 H 1.48501 * 109.47135 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46995 * 120.00274 * 23 21 19 26 26 H 1.48504 * 109.46877 * 240.00049 * 23 21 19 27 27 C 1.46933 * 118.73707 * 306.64093 * 18 17 16 28 28 C 1.52758 * 109.00408 * 53.31408 * 27 18 17 29 29 H 1.08997 * 109.46995 * 300.00056 * 1 2 3 30 30 H 1.09006 * 109.47016 * 59.99842 * 1 2 3 31 31 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47029 * 59.99464 * 3 2 1 33 33 H 1.08999 * 109.46708 * 300.00502 * 3 2 1 34 34 H 1.08997 * 109.46882 * 59.97003 * 5 4 3 35 35 H 1.08997 * 109.46749 * 179.97438 * 5 4 3 36 36 H 0.97000 * 120.00397 * 359.97438 * 6 5 4 37 37 H 1.08003 * 120.47373 * 359.96305 * 10 9 7 38 38 H 1.07996 * 120.75878 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.32562 * 180.02562 * 12 11 10 40 40 H 1.09000 * 109.47149 * 89.99802 * 14 13 12 41 41 H 1.08996 * 109.47142 * 209.99895 * 14 13 12 42 42 H 1.08996 * 109.47030 * 330.00246 * 14 13 12 43 43 H 1.08999 * 109.49781 * 298.68607 * 16 4 3 44 44 H 1.09004 * 109.51980 * 178.60817 * 16 4 3 45 45 H 1.09000 * 109.58790 * 294.84843 * 17 16 4 46 46 H 1.09003 * 109.70840 * 174.49438 * 17 16 4 47 47 H 0.97002 * 120.00067 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58175 * 173.14238 * 27 18 17 49 49 H 1.08993 * 109.58871 * 293.56927 * 27 18 17 50 50 H 1.09006 * 109.56332 * 185.55045 * 28 27 18 51 51 H 1.08994 * 109.39241 * 65.51309 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9862 0.4261 -1.2506 6 7 3.3906 -0.9124 -1.2508 7 6 3.6488 -1.7646 -2.2626 8 8 4.3758 -1.4229 -3.1743 9 6 3.0469 -3.1186 -2.2625 10 6 3.3172 -3.9946 -3.3115 11 6 2.7474 -5.2578 -3.2973 12 6 1.9263 -5.6009 -2.2343 13 6 1.7004 -4.6786 -1.2253 14 6 0.8081 -5.0467 -0.0680 15 7 2.2577 -3.4878 -1.2615 16 6 4.1577 2.5828 0.0000 17 6 3.6768 3.3508 1.2352 18 7 3.9782 2.5557 2.4334 19 6 4.6878 3.0989 3.4709 20 1 5.3932 3.8951 3.2843 21 6 4.4964 2.6301 4.7634 22 7 3.4274 1.9193 5.0540 23 14 5.7558 3.0081 6.0902 24 1 6.8578 3.8173 5.5105 25 1 5.1059 3.7694 7.1870 26 1 6.3052 1.7374 6.6276 27 6 3.5087 1.1647 2.4947 28 6 3.9868 0.4230 1.2478 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.6637 0.9674 -2.1400 35 1 5.0728 0.3404 -1.2514 36 1 2.8106 -1.1853 -0.5229 37 1 3.9614 -3.6935 -4.1243 38 1 2.9386 -5.9590 -4.0961 39 1 1.4673 -6.5776 -2.1930 40 1 1.4070 -5.4969 0.7237 41 1 0.3179 -4.1505 0.3122 42 1 0.0541 -5.7590 -0.4028 43 1 3.8547 3.1163 -0.9009 44 1 5.2442 2.4980 0.0245 45 1 2.6016 3.5159 1.1671 46 1 4.1907 4.3103 1.2945 47 1 3.2938 1.5913 5.9571 48 1 3.9139 0.6813 3.3836 49 1 2.4196 1.1479 2.5314 50 1 3.5621 -0.5808 1.2349 51 1 5.0747 0.3575 1.2605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162119231.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:59 Heat of formation + Delta-G solvation = -23.035381 kcal Electronic energy + Delta-G solvation = -32098.283231 eV Core-core repulsion = 27998.437562 eV Total energy + Delta-G solvation = -4099.845669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.74147 -39.66306 -38.43555 -36.66684 -34.81987 -33.27406 -33.14274 -32.43564 -30.72415 -29.94655 -28.00464 -27.33803 -26.92928 -25.16940 -24.56378 -23.64126 -22.38123 -22.18541 -20.85340 -20.35038 -18.46489 -17.84178 -16.70580 -16.62902 -16.20017 -15.96973 -15.70161 -15.30311 -15.24093 -14.81172 -14.60682 -14.50746 -14.21968 -13.82802 -13.55172 -13.43893 -13.31382 -13.21691 -13.14633 -12.58753 -12.48575 -12.43180 -12.28366 -12.11050 -11.88250 -11.55312 -11.29467 -11.17696 -10.92648 -10.71866 -10.49497 -10.26726 -10.17430 -10.13940 -10.10886 -9.88561 -9.63580 -9.46654 -9.38645 -9.26364 -9.19118 -8.67448 -8.42698 -6.64426 -5.77219 -3.19310 0.52688 1.01309 2.78783 3.26783 3.38111 3.46350 3.48345 3.77713 3.87884 4.10017 4.44722 4.51092 4.72464 4.77176 4.87220 5.05873 5.14895 5.24703 5.34407 5.36475 5.37779 5.40848 5.42469 5.49025 5.54498 5.58956 5.69276 5.77490 5.79614 5.84361 5.85886 5.89918 5.94880 5.98142 6.08607 6.18068 6.31537 6.40144 6.45586 6.64484 6.70299 6.72974 6.79086 6.87254 6.93842 7.37724 7.43985 7.57940 7.71519 7.82095 7.98051 8.46661 8.46719 9.23255 9.86619 10.42899 11.30991 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.002919 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.073352 B = 9590.161236 C =10114.151889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.388 6.388 3 C 0.069 3.931 4 C -0.058 4.058 5 C 0.130 3.870 6 N -0.684 5.684 7 C 0.560 3.440 8 O -0.551 6.551 9 C 0.092 3.908 10 C -0.124 4.124 11 C -0.081 4.081 12 C -0.156 4.156 13 C 0.126 3.874 14 C -0.105 4.105 15 N -0.450 5.450 16 C -0.120 4.120 17 C 0.144 3.856 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.173 3.827 28 C -0.126 4.126 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.424 0.576 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.018 0.982 46 H 0.056 0.944 47 H 0.252 0.748 48 H 0.086 0.914 49 H 0.020 0.980 50 H 0.056 0.944 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 -13.371 -14.936 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.307 6.307 3 C -0.007 4.007 4 C -0.058 4.058 5 C 0.006 3.994 6 N -0.341 5.341 7 C 0.344 3.656 8 O -0.429 6.429 9 C -0.047 4.047 10 C -0.145 4.145 11 C -0.107 4.107 12 C -0.176 4.176 13 C -0.014 4.014 14 C -0.163 4.163 15 N -0.163 5.163 16 C -0.160 4.160 17 C 0.018 3.982 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.166 4.166 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.269 0.731 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.035 0.965 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.038 0.962 50 H 0.075 0.925 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.522 -12.691 -14.681 20.472 hybrid contribution 0.268 -0.410 0.292 0.570 sum -6.255 -13.100 -14.389 20.440 Atomic orbital electron populations 1.22634 0.81433 1.02148 0.99604 1.87531 1.19293 1.28508 1.95323 1.22762 0.93089 0.84289 1.00568 1.20782 0.93146 0.96759 0.95140 1.21504 0.97915 0.82170 0.97804 1.46234 1.48962 1.13902 1.24966 1.17918 0.81107 0.83755 0.82796 1.90748 1.38395 1.77106 1.36681 1.21257 0.96184 0.95372 0.91852 1.22112 0.99540 0.93548 0.99263 1.21590 0.95028 0.95984 0.98048 1.22169 0.99599 1.00870 0.94979 1.21362 0.95391 0.88911 0.95735 1.20748 0.97748 1.02818 0.94937 1.67476 1.06880 1.17884 1.24045 1.21995 1.00894 0.93680 0.99431 1.20918 0.96731 0.93946 0.86625 1.44066 1.64047 1.07860 1.15491 1.19221 1.14842 1.18368 0.85631 0.91692 1.25026 0.96726 1.00866 0.97016 1.70041 1.25163 1.40189 1.19183 0.86256 0.81217 0.77589 0.81902 1.20288 1.21815 1.21605 1.20684 0.96003 0.84004 0.94537 1.22120 1.00468 0.98280 0.95693 0.93939 0.94881 0.90118 0.91212 0.94202 0.92013 0.91463 0.73107 0.83582 0.84226 0.84466 0.90092 0.89973 0.90697 0.92665 0.91218 0.96464 0.92593 0.93765 0.89591 0.96182 0.92532 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 11.01 101.05 1.11 1.59 16 2 O -0.39 -5.92 6.77 -35.23 -0.24 -6.16 16 3 C 0.07 1.09 4.04 37.15 0.15 1.24 16 4 C -0.06 -0.95 0.51 -154.47 -0.08 -1.03 16 5 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 6 N -0.68 -10.96 4.59 -61.14 -0.28 -11.24 16 7 C 0.56 9.16 7.81 -12.18 -0.10 9.07 16 8 O -0.55 -10.13 16.32 5.36 0.09 -10.04 16 9 C 0.09 1.30 6.75 -83.01 -0.56 0.74 16 10 C -0.12 -1.42 9.63 -39.05 -0.38 -1.80 16 11 C -0.08 -0.69 10.17 -39.31 -0.40 -1.09 16 12 C -0.16 -1.29 9.75 -39.32 -0.38 -1.68 16 13 C 0.13 1.32 6.78 -82.60 -0.56 0.76 16 14 C -0.11 -0.81 10.17 36.00 0.37 -0.44 16 15 N -0.45 -6.02 9.45 -6.06 -0.06 -6.08 16 16 C -0.12 -2.00 4.91 -26.61 -0.13 -2.13 16 17 C 0.14 2.88 6.05 -3.71 -0.02 2.86 16 18 N -0.59 -14.37 3.00 -172.58 -0.52 -14.88 16 19 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 20 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 21 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -25.83 11.18 55.49 0.62 -25.21 16 23 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.17 4.04 4.81 -3.93 -0.02 4.02 16 28 C -0.13 -2.43 4.57 -26.83 -0.12 -2.55 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.25 4.99 -51.93 -0.26 0.99 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.42 6.87 4.01 -40.82 -0.16 6.71 16 37 H 0.15 1.60 7.64 -52.48 -0.40 1.20 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.02 0.35 6.69 -51.93 -0.35 0.00 16 46 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.09 2.30 6.05 -51.93 -0.31 1.98 16 49 H 0.02 0.49 6.70 -51.93 -0.35 0.14 16 50 H 0.06 1.06 6.49 -51.93 -0.34 0.72 16 51 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -31.79 398.72 -8.82 -40.61 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.05 Total: 5.75 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.37 Total: 4.64 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.24 Total: -57.41 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.15 Total: -16.20 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.79 -8.82 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162119231.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.578 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds