Wall clock time and date at job start Wed Apr 1 2020 04:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00584 * 2 1 4 4 C 1.52994 * 109.47467 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46278 * 60.02842 * 4 3 2 6 6 N 1.46503 * 109.46639 * 299.97330 * 5 4 3 7 7 C 1.34775 * 119.99463 * 179.97438 * 6 5 4 8 8 O 1.21512 * 120.00187 * 0.02562 * 7 6 5 9 9 C 1.48176 * 119.99635 * 179.97438 * 7 6 5 10 10 C 1.39311 * 119.71902 * 179.97438 * 9 7 6 11 11 C 1.38590 * 119.05724 * 179.97438 * 10 9 7 12 12 C 1.38628 * 118.48729 * 0.02562 * 11 10 9 13 13 C 1.38557 * 119.35501 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.55254 * 179.97438 * 13 12 11 15 15 N 1.31529 * 120.89779 * 359.73874 * 13 12 11 16 16 C 1.53043 * 109.45847 * 180.02562 * 4 3 2 17 17 C 1.53188 * 109.31445 * 58.64166 * 16 4 3 18 18 N 1.46925 * 108.77701 * 54.63452 * 17 16 4 19 19 C 1.36933 * 120.63218 * 126.36931 * 18 17 16 20 20 H 1.07998 * 120.00198 * 332.45537 * 19 18 17 21 21 C 1.38819 * 119.99952 * 152.17898 * 19 18 17 22 22 N 1.31617 * 120.00072 * 343.15781 * 21 19 18 23 23 Si 1.86804 * 119.99834 * 163.15974 * 21 19 18 24 24 H 1.48501 * 109.47135 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46995 * 120.00274 * 23 21 19 26 26 H 1.48504 * 109.46877 * 240.00049 * 23 21 19 27 27 C 1.46933 * 118.73707 * 306.64093 * 18 17 16 28 28 C 1.52758 * 109.00408 * 53.31408 * 27 18 17 29 29 H 1.08997 * 109.46995 * 300.00056 * 1 2 3 30 30 H 1.09006 * 109.47016 * 59.99842 * 1 2 3 31 31 H 1.08999 * 109.47354 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47029 * 59.99464 * 3 2 1 33 33 H 1.08999 * 109.46708 * 300.00502 * 3 2 1 34 34 H 1.08997 * 109.46882 * 59.97003 * 5 4 3 35 35 H 1.08997 * 109.46749 * 179.97438 * 5 4 3 36 36 H 0.97000 * 120.00397 * 359.97438 * 6 5 4 37 37 H 1.08003 * 120.47373 * 359.96305 * 10 9 7 38 38 H 1.07996 * 120.75878 * 180.02562 * 11 10 9 39 39 H 1.07998 * 120.32562 * 180.02562 * 12 11 10 40 40 H 1.09000 * 109.47149 * 89.99802 * 14 13 12 41 41 H 1.08996 * 109.47142 * 209.99895 * 14 13 12 42 42 H 1.08996 * 109.47030 * 330.00246 * 14 13 12 43 43 H 1.08999 * 109.49781 * 298.68607 * 16 4 3 44 44 H 1.09004 * 109.51980 * 178.60817 * 16 4 3 45 45 H 1.09000 * 109.58790 * 294.84843 * 17 16 4 46 46 H 1.09003 * 109.70840 * 174.49438 * 17 16 4 47 47 H 0.97002 * 120.00067 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58175 * 173.14238 * 27 18 17 49 49 H 1.08993 * 109.58871 * 293.56927 * 27 18 17 50 50 H 1.09006 * 109.56332 * 185.55045 * 28 27 18 51 51 H 1.08994 * 109.39241 * 65.51309 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9862 0.4261 -1.2506 6 7 3.3906 -0.9124 -1.2508 7 6 3.6488 -1.7646 -2.2626 8 8 4.3758 -1.4229 -3.1743 9 6 3.0469 -3.1186 -2.2625 10 6 3.3172 -3.9946 -3.3115 11 6 2.7474 -5.2578 -3.2973 12 6 1.9263 -5.6009 -2.2343 13 6 1.7004 -4.6786 -1.2253 14 6 0.8081 -5.0467 -0.0680 15 7 2.2577 -3.4878 -1.2615 16 6 4.1577 2.5828 0.0000 17 6 3.6768 3.3508 1.2352 18 7 3.9782 2.5557 2.4334 19 6 4.6878 3.0989 3.4709 20 1 5.3932 3.8951 3.2843 21 6 4.4964 2.6301 4.7634 22 7 3.4274 1.9193 5.0540 23 14 5.7558 3.0081 6.0902 24 1 6.8578 3.8173 5.5105 25 1 5.1059 3.7694 7.1870 26 1 6.3052 1.7374 6.6276 27 6 3.5087 1.1647 2.4947 28 6 3.9868 0.4230 1.2478 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.6637 0.9674 -2.1400 35 1 5.0728 0.3404 -1.2514 36 1 2.8106 -1.1853 -0.5229 37 1 3.9614 -3.6935 -4.1243 38 1 2.9386 -5.9590 -4.0961 39 1 1.4673 -6.5776 -2.1930 40 1 1.4070 -5.4969 0.7237 41 1 0.3179 -4.1505 0.3122 42 1 0.0541 -5.7590 -0.4028 43 1 3.8547 3.1163 -0.9009 44 1 5.2442 2.4980 0.0245 45 1 2.6016 3.5159 1.1671 46 1 4.1907 4.3103 1.2945 47 1 3.2938 1.5913 5.9571 48 1 3.9139 0.6813 3.3836 49 1 2.4196 1.1479 2.5314 50 1 3.5621 -0.5808 1.2349 51 1 5.0747 0.3575 1.2605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162119231.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:58 Heat of formation + Delta-G solvation = -42.886745 kcal Electronic energy + Delta-G solvation = -32099.144050 eV Core-core repulsion = 27998.437562 eV Total energy + Delta-G solvation = -4100.706489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.72171 -40.91515 -39.67681 -38.04419 -36.31974 -34.72367 -33.93302 -33.46798 -32.43331 -31.64926 -28.95086 -28.61577 -28.15486 -26.41996 -25.96196 -24.97447 -23.89306 -23.11082 -22.41938 -21.53725 -19.94126 -19.12128 -18.35984 -17.60100 -17.22444 -17.12968 -16.83856 -16.79088 -16.40275 -16.33241 -15.88007 -15.61350 -15.36133 -15.23065 -15.15688 -14.79663 -14.58420 -14.45312 -14.05132 -13.99254 -13.76265 -13.46393 -13.21357 -13.12678 -13.05561 -12.98172 -12.84270 -12.62618 -12.56270 -12.36136 -12.21214 -11.95195 -11.82201 -11.46452 -11.44140 -11.15289 -11.10943 -10.89666 -10.55926 -10.47501 -10.41850 -10.11105 -9.82924 -8.63816 -7.85224 -5.29550 -0.32669 0.27433 1.45449 1.48139 1.57888 1.73906 2.13367 2.52054 2.80421 2.87084 3.16412 3.29595 3.68005 3.73462 3.74542 3.85127 3.95038 3.99711 4.06853 4.12395 4.27928 4.42419 4.48312 4.49753 4.53224 4.60494 4.61072 4.63608 4.68350 4.72148 4.78343 4.79034 4.84278 4.87269 4.92642 5.05627 5.14980 5.15710 5.16544 5.21430 5.24750 5.25637 5.38140 5.48384 5.56647 5.67180 5.69760 5.79826 6.25036 6.41377 6.56664 6.93164 7.17506 7.23940 7.89310 8.40397 9.20823 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.002919 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.073352 B = 9590.161236 C =10114.151889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.400 6.400 3 C 0.077 3.923 4 C -0.050 4.050 5 C 0.137 3.863 6 N -0.686 5.686 7 C 0.556 3.444 8 O -0.580 6.580 9 C 0.058 3.942 10 C -0.131 4.131 11 C -0.074 4.074 12 C -0.139 4.139 13 C 0.109 3.891 14 C -0.103 4.103 15 N -0.477 5.477 16 C -0.110 4.110 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.066 0.934 21 C -0.051 4.051 22 N -0.932 5.932 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.188 3.812 28 C -0.110 4.110 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.423 0.577 37 H 0.144 0.856 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.057 0.943 47 H 0.248 0.752 48 H 0.046 0.954 49 H 0.002 0.998 50 H 0.058 0.942 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 -15.019 -16.849 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.319 6.319 3 C 0.001 3.999 4 C -0.050 4.050 5 C 0.013 3.987 6 N -0.341 5.341 7 C 0.342 3.658 8 O -0.461 6.461 9 C -0.079 4.079 10 C -0.152 4.152 11 C -0.099 4.099 12 C -0.159 4.159 13 C -0.031 4.031 14 C -0.160 4.160 15 N -0.191 5.191 16 C -0.150 4.150 17 C 0.016 3.984 18 N -0.333 5.333 19 C -0.390 4.390 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.192 1.192 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.062 3.938 28 C -0.150 4.150 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.268 0.732 37 H 0.162 0.838 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.020 0.980 50 H 0.076 0.924 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.141 -14.321 -16.617 23.070 hybrid contribution 0.368 0.017 0.865 0.940 sum -6.773 -14.304 -15.752 22.330 Atomic orbital electron populations 1.22788 0.79888 1.03360 1.00065 1.87517 1.20970 1.28061 1.95389 1.22598 0.92342 0.84672 1.00334 1.20670 0.93930 0.96459 0.93958 1.21381 0.97508 0.82386 0.97429 1.46245 1.48914 1.13939 1.25034 1.18356 0.80588 0.84726 0.82129 1.90708 1.39775 1.77997 1.37625 1.21015 0.98335 0.94860 0.93720 1.22251 0.99829 0.94599 0.98506 1.22030 0.93754 0.95108 0.98990 1.22632 0.98086 1.01790 0.93385 1.21928 0.95468 0.88531 0.97215 1.20829 0.97972 1.02976 0.94272 1.67386 1.07593 1.19765 1.24309 1.21882 1.00561 0.93436 0.99097 1.21081 0.97075 0.94047 0.86237 1.44297 1.64081 1.08601 1.16283 1.19537 1.14864 1.18030 0.86524 0.91591 1.25744 0.98381 1.01415 0.99053 1.70187 1.26802 1.41596 1.19238 0.85280 0.79241 0.77109 0.79258 1.19180 1.21928 1.21974 1.20370 0.94584 0.84111 0.94736 1.21865 0.99510 0.98234 0.95357 0.94458 0.93340 0.88624 0.93653 0.92044 0.90926 0.92143 0.73236 0.83775 0.80426 0.80420 0.89757 0.91295 0.87624 0.89061 0.91612 0.96069 0.92411 0.94277 0.93558 0.97964 0.92379 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -12.11 6.77 -148.98 -1.01 -13.12 16 3 C 0.08 2.39 4.04 71.98 0.29 2.68 16 4 C -0.05 -1.62 0.51 -52.15 -0.03 -1.65 16 5 C 0.14 4.26 4.56 86.38 0.39 4.65 16 6 N -0.69 -22.03 4.59 -465.66 -2.14 -24.17 16 7 C 0.56 18.39 7.81 86.88 0.68 19.07 16 8 O -0.58 -21.60 16.32 -3.75 -0.06 -21.66 16 9 C 0.06 1.62 6.75 41.91 0.28 1.91 16 10 C -0.13 -2.85 9.63 22.61 0.22 -2.63 16 11 C -0.07 -1.01 10.17 22.45 0.23 -0.79 16 12 C -0.14 -1.78 9.75 22.44 0.22 -1.57 16 13 C 0.11 2.06 6.78 42.68 0.29 2.35 16 14 C -0.10 -1.37 10.17 71.24 0.72 -0.65 16 15 N -0.48 -12.54 9.45 -173.08 -1.64 -14.17 16 16 C -0.11 -3.53 4.91 30.67 0.15 -3.38 16 17 C 0.14 5.59 6.05 86.36 0.52 6.11 16 18 N -0.61 -30.24 3.00 -699.93 -2.10 -32.34 16 19 C -0.26 -14.26 9.58 84.04 0.81 -13.45 16 20 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 21 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 22 N -0.93 -55.34 11.18 21.65 0.24 -55.10 16 23 Si 0.96 45.37 29.59 68.60 2.03 47.40 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 C 0.19 9.11 4.81 86.22 0.41 9.53 16 28 C -0.11 -4.36 4.57 30.53 0.14 -4.22 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.64 4.99 -2.39 -0.01 1.63 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.42 13.85 4.01 -92.71 -0.37 13.48 16 37 H 0.14 3.09 7.64 -2.91 -0.02 3.06 16 38 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.11 0.72 8.08 -2.39 -0.02 0.70 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.02 0.84 6.69 -2.39 -0.02 0.82 16 46 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 47 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 48 H 0.05 2.60 6.05 -2.39 -0.01 2.59 16 49 H 0.00 0.12 6.70 -2.39 -0.02 0.10 16 50 H 0.06 2.26 6.49 -2.38 -0.02 2.24 16 51 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -72.20 398.72 2.88 -69.32 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.56 Total: 26.21 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 7.00 Total: 17.63 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.63 Total: -125.78 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.07 Total: -34.78 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.20 2.88 -69.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162119231.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.434 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds