Wall clock time and date at job start Wed Apr 1 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38221 * 120.42322 * 2 1 4 4 N 1.31860 * 120.76621 * 179.97438 * 3 2 1 5 5 C 1.31891 * 121.72032 * 359.70118 * 4 3 2 6 6 C 1.38177 * 120.76469 * 0.59042 * 5 4 3 7 7 C 1.50705 * 120.41698 * 179.70264 * 6 5 4 8 8 C 1.52994 * 109.46759 * 269.72120 * 7 6 5 9 9 C 1.50707 * 109.47135 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99641 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00117 * 180.02562 * 9 8 7 12 12 C 1.47506 * 118.75946 * 359.97438 * 11 9 8 13 13 C 1.53569 * 111.03314 * 138.39070 * 12 11 9 14 14 C 1.51538 * 109.58033 * 320.02469 * 13 12 11 15 15 O 1.42151 * 108.75027 * 91.39751 * 14 13 12 16 16 C 1.38024 * 119.44421 * 272.76485 * 15 14 13 17 17 H 1.09000 * 109.46486 * 303.43492 * 16 15 14 18 18 C 1.52992 * 109.46993 * 183.43739 * 16 15 14 19 19 N 1.46498 * 109.47364 * 64.99505 * 18 16 15 20 20 C 1.36935 * 120.00239 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 C 1.45125 * 118.75765 * 179.97438 * 11 9 8 29 29 C 1.38635 * 120.41561 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47315 * 270.02819 * 1 2 3 31 31 H 1.09005 * 109.46540 * 30.01928 * 1 2 3 32 32 H 1.08995 * 109.47708 * 150.02387 * 1 2 3 33 33 H 1.07995 * 119.61949 * 359.95311 * 3 2 1 34 34 H 1.07998 * 119.61131 * 180.30651 * 5 4 3 35 35 H 1.08990 * 109.47023 * 149.71956 * 7 6 5 36 36 H 1.09003 * 109.46855 * 29.71681 * 7 6 5 37 37 H 1.09004 * 109.47756 * 60.00237 * 8 7 6 38 38 H 1.08996 * 109.47181 * 299.99778 * 8 7 6 39 39 H 1.09003 * 109.16757 * 258.79277 * 12 11 9 40 40 H 1.09004 * 109.16893 * 17.99154 * 12 11 9 41 41 H 1.09006 * 109.44894 * 80.05297 * 13 12 11 42 42 H 1.08996 * 109.45676 * 199.98601 * 13 12 11 43 43 H 1.08995 * 109.59151 * 211.18086 * 14 13 12 44 44 H 1.09000 * 109.58800 * 331.61937 * 14 13 12 45 45 H 1.09001 * 109.47602 * 304.99378 * 18 16 15 46 46 H 1.09001 * 109.46922 * 184.99523 * 18 16 15 47 47 H 0.97004 * 119.99747 * 0.02562 * 19 18 16 48 48 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 49 49 H 1.08994 * 109.46072 * 149.23475 * 28 11 9 50 50 H 1.09005 * 109.44541 * 29.27446 * 28 11 9 51 51 H 1.07993 * 120.78721 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2257 0.0821 0.0069 6 6 3.5947 -1.1472 0.0011 7 6 4.4025 -2.4195 0.0017 8 6 4.6764 -2.8502 -1.4406 9 6 5.4848 -4.1222 -1.4401 10 8 5.8102 -4.6334 -0.3895 11 7 5.8470 -4.6909 -2.6070 12 6 5.4370 -4.0456 -3.8684 13 6 6.5790 -4.0668 -4.8950 14 6 7.8943 -3.7850 -4.1973 15 8 8.4752 -5.0203 -3.8009 16 6 8.1343 -5.5701 -2.5816 17 1 8.3466 -4.8537 -1.7880 18 6 8.9499 -6.8437 -2.3506 19 7 10.3697 -6.5006 -2.2377 20 6 11.2974 -7.4855 -2.0268 21 1 10.9825 -8.5153 -1.9440 22 6 12.6427 -7.1604 -1.9194 23 7 13.0270 -5.9060 -2.0257 24 14 13.9083 -8.5040 -1.6324 25 1 15.2635 -7.9007 -1.5621 26 1 13.6097 -9.2006 -0.3553 27 1 13.8579 -9.4787 -2.7515 28 6 6.6257 -5.9151 -2.5750 29 6 2.2089 -1.1956 0.0005 30 1 -0.3634 0.0005 1.0277 31 1 -0.3632 0.8899 -0.5142 32 1 -0.3634 -0.8901 -0.5134 33 1 1.6677 2.1276 -0.0008 34 1 5.3046 0.1283 0.0121 35 1 3.8458 -3.2031 0.5154 36 1 5.3484 -2.2490 0.5158 37 1 5.2333 -2.0666 -1.9544 38 1 3.7306 -3.0207 -1.9547 39 1 4.5772 -4.5754 -4.2785 40 1 5.1563 -3.0118 -3.6668 41 1 6.6225 -5.0473 -5.3693 42 1 6.3997 -3.3048 -5.6533 43 1 8.5671 -3.2674 -4.8810 44 1 7.7163 -3.1660 -3.3179 45 1 8.8063 -7.5245 -3.1896 46 1 8.6184 -7.3256 -1.4308 47 1 10.6525 -5.5757 -2.3117 48 1 12.3699 -5.2083 -2.1751 49 1 6.3877 -6.5199 -3.4500 50 1 6.3855 -6.4745 -1.6708 51 1 1.6887 -2.1419 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200937717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:59 Heat of formation + Delta-G solvation = -36.541612 kcal Electronic energy + Delta-G solvation = -30485.768719 eV Core-core repulsion = 26385.337375 eV Total energy + Delta-G solvation = -4100.431343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90021 -40.49515 -38.64244 -35.77259 -35.07244 -34.76463 -33.99705 -33.03406 -31.01450 -30.77910 -28.68335 -27.73661 -26.80552 -25.73015 -24.37147 -23.38395 -22.61383 -21.81887 -21.22697 -21.01383 -19.07425 -17.65845 -17.32620 -17.23573 -17.09856 -16.61124 -16.43459 -16.09074 -15.35099 -15.08796 -14.69367 -14.51283 -14.30305 -14.06669 -13.69910 -13.60412 -13.50682 -13.44976 -13.35732 -13.20241 -13.06525 -12.90368 -12.70875 -12.49966 -12.44837 -12.11649 -11.87327 -11.61271 -11.44198 -11.38831 -11.06123 -10.66008 -10.50958 -10.33075 -10.07841 -9.93207 -9.85828 -9.77128 -9.49461 -9.17827 -9.13574 -8.81072 -8.62393 -6.90217 -6.01444 -2.99651 0.68865 0.87822 2.44150 2.76621 3.38437 3.57017 3.61518 3.78674 3.86972 3.97809 4.17854 4.32202 4.45248 4.50033 4.54866 4.56294 4.61888 4.68697 4.70378 4.75061 4.87011 4.90877 5.08144 5.08726 5.13207 5.17623 5.26911 5.29340 5.32395 5.37948 5.43713 5.44958 5.53629 5.57345 5.69871 5.75764 5.77309 5.81284 5.88852 5.90920 5.93370 6.02269 6.15470 6.33158 6.42026 6.60212 6.72200 7.12321 7.60796 7.87368 7.92217 8.00701 8.85539 9.33108 10.19655 10.35510 11.47489 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017459 B = 0.001997 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.347893 B =14018.090954 C =14512.758155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.091 3.909 4 N -0.479 5.479 5 C 0.096 3.904 6 C -0.126 4.126 7 C -0.063 4.063 8 C -0.133 4.133 9 C 0.505 3.495 10 O -0.530 6.530 11 N -0.610 5.610 12 C 0.105 3.895 13 C -0.167 4.167 14 C 0.073 3.927 15 O -0.370 6.370 16 C 0.088 3.912 17 H 0.051 0.949 18 C 0.172 3.828 19 N -0.737 5.737 20 C -0.329 4.329 21 H 0.064 0.936 22 C -0.047 4.047 23 N -0.944 5.944 24 Si 1.082 2.918 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.296 1.296 28 C 0.082 3.918 29 C -0.075 4.075 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.369 0.631 48 H 0.255 0.745 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.031 12.555 -2.053 31.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.067 4.067 4 N -0.186 5.186 5 C -0.061 4.061 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.173 4.173 9 C 0.293 3.707 10 O -0.406 6.406 11 N -0.344 5.344 12 C -0.017 4.017 13 C -0.205 4.205 14 C -0.004 4.004 15 O -0.288 6.288 16 C 0.028 3.972 17 H 0.068 0.932 18 C 0.044 3.956 19 N -0.383 5.383 20 C -0.460 4.460 21 H 0.082 0.918 22 C -0.245 4.245 23 N -0.590 5.590 24 Si 0.912 3.088 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.042 4.042 29 C -0.101 4.101 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.203 0.797 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.112 0.888 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.734 12.439 -1.401 29.519 hybrid contribution -2.385 -0.071 -0.251 2.399 sum -29.118 12.368 -1.652 31.679 Atomic orbital electron populations 1.20732 0.90166 1.03177 1.02705 1.20954 0.97617 0.94150 1.01146 1.22681 0.90012 0.97475 0.96484 1.67710 1.08330 1.31243 1.11329 1.22740 1.00468 0.87095 0.95797 1.20930 0.94507 0.96712 1.00688 1.20295 1.00629 0.93524 0.95664 1.21702 1.00874 0.95839 0.98912 1.20741 0.80179 0.86166 0.83601 1.90751 1.55241 1.63884 1.30763 1.47964 1.54152 1.26247 1.06028 1.22007 0.97363 0.98082 0.84291 1.22509 0.95474 1.04225 0.98340 1.22119 0.93510 0.86529 0.98204 1.86433 1.68575 1.36847 1.36995 1.22280 0.92308 0.96801 0.85830 0.93156 1.20540 0.85282 0.91725 0.98092 1.42218 1.00634 1.06981 1.88436 1.20031 0.89972 0.89435 1.46602 0.91788 1.25782 0.96338 1.01568 1.00767 1.70856 1.36039 0.99527 1.52603 0.83225 0.76081 0.73690 0.75756 1.21070 1.22312 1.22312 1.22390 0.91836 0.85988 1.03994 1.21430 0.93421 0.98284 0.96943 0.90826 0.91108 0.91273 0.82963 0.82698 0.89785 0.89468 0.88705 0.88898 0.91408 0.89912 0.89900 0.89616 0.89253 0.93541 0.95439 0.94702 0.79720 0.93380 0.89906 0.88810 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.04 36.01 0.36 -0.08 16 2 C -0.14 -0.92 5.90 -104.48 -0.62 -1.54 16 3 C 0.09 0.72 10.86 -17.55 -0.19 0.53 16 4 N -0.48 -4.82 10.36 -13.25 -0.14 -4.96 16 5 C 0.10 0.87 10.86 -17.55 -0.19 0.68 16 6 C -0.13 -1.03 5.15 -104.48 -0.54 -1.56 16 7 C -0.06 -0.54 4.66 -27.88 -0.13 -0.67 16 8 C -0.13 -1.08 4.02 -27.88 -0.11 -1.19 16 9 C 0.51 6.19 7.63 -10.98 -0.08 6.11 16 10 O -0.53 -8.73 15.41 5.55 0.09 -8.64 16 11 N -0.61 -7.07 2.19 -172.50 -0.38 -7.45 16 12 C 0.11 0.84 6.00 -3.20 -0.02 0.83 16 13 C -0.17 -1.52 5.79 -27.18 -0.16 -1.68 16 14 C 0.07 0.93 6.38 36.42 0.23 1.17 16 15 O -0.37 -6.53 9.38 -26.57 -0.25 -6.78 16 16 C 0.09 1.58 2.68 -25.81 -0.07 1.51 16 17 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 18 C 0.17 3.75 5.92 -4.05 -0.02 3.72 16 19 N -0.74 -20.01 5.54 -59.91 -0.33 -20.34 16 20 C -0.33 -9.81 9.99 -15.06 -0.15 -9.96 16 21 H 0.06 1.86 7.83 -52.48 -0.41 1.44 16 22 C -0.05 -1.43 5.50 -17.43 -0.10 -1.53 16 23 N -0.94 -30.48 13.70 55.49 0.76 -29.72 16 24 Si 1.08 26.89 29.92 -169.99 -5.09 21.81 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.08 1.16 4.86 -3.85 -0.02 1.14 16 29 C -0.07 -0.53 9.55 -39.28 -0.37 -0.91 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 32 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 33 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.09 0.66 7.41 -51.93 -0.38 0.28 16 38 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.49 5.88 -51.93 -0.31 0.19 16 41 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.59 7.40 -51.93 -0.38 0.21 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.37 10.39 6.49 -40.82 -0.26 10.13 16 48 H 0.25 8.18 6.77 -40.82 -0.28 7.91 16 49 H 0.08 1.07 8.11 -51.93 -0.42 0.64 16 50 H 0.09 1.43 7.27 -51.93 -0.38 1.05 16 51 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -37.53 410.26 -9.69 -47.22 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -8.36 Total: 6.14 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.18 Total: -3.45 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.09 Total: -62.48 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.16 Total: -15.43 kcal Atomic # 14 Polarization: 26.89 SS G_CDS: -5.09 Total: 21.81 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.53 -9.69 -47.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200937717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.682 kcal (2) G-P(sol) polarization free energy of solvation -37.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds