Wall clock time and date at job start Wed Apr 1 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38628 * 120.32630 * 2 1 4 4 C 1.38585 * 118.48469 * 179.75362 * 3 2 1 5 5 C 1.39311 * 119.06038 * 0.51254 * 4 3 2 6 6 C 1.48177 * 119.72116 * 179.75166 * 5 4 3 7 7 O 1.21510 * 119.99774 * 352.65338 * 6 5 4 8 8 N 1.34774 * 119.99661 * 172.65093 * 6 5 4 9 9 C 1.46925 * 120.62743 * 169.79329 * 8 6 5 10 10 C 1.53192 * 108.77542 * 126.36815 * 9 8 6 11 11 C 1.53043 * 109.33772 * 54.61721 * 10 9 8 12 12 C 1.53041 * 109.53963 * 298.68243 * 11 10 9 13 13 H 1.08998 * 109.49665 * 301.34648 * 12 11 10 14 14 N 1.46502 * 109.49575 * 181.28412 * 12 11 10 15 15 C 1.36935 * 119.99873 * 300.06450 * 14 12 11 16 16 H 1.08005 * 120.00297 * 36.55116 * 15 14 12 17 17 C 1.38809 * 119.99999 * 216.82536 * 15 14 12 18 18 N 1.31618 * 120.00304 * 23.52880 * 17 15 14 19 19 Si 1.86801 * 120.00263 * 203.52679 * 17 15 14 20 20 H 1.48504 * 109.47232 * 89.99695 * 19 17 15 21 21 H 1.48497 * 109.47300 * 210.00128 * 19 17 15 22 22 H 1.48499 * 109.47061 * 330.00229 * 19 17 15 23 23 C 1.46496 * 119.99866 * 120.06659 * 14 12 11 24 24 C 1.52995 * 109.47373 * 274.76298 * 23 14 12 25 25 O 1.42906 * 109.46864 * 65.00030 * 24 23 14 26 26 C 1.46921 * 120.63222 * 349.76702 * 8 6 5 27 27 N 1.32713 * 120.55438 * 359.48228 * 5 4 3 28 28 C 1.31524 * 121.64285 * 0.26756 * 27 5 4 29 29 C 1.50698 * 119.54577 * 179.97438 * 28 27 5 30 30 H 1.08996 * 109.46749 * 269.97587 * 1 2 3 31 31 H 1.09003 * 109.46724 * 29.97059 * 1 2 3 32 32 H 1.09000 * 109.47520 * 149.97250 * 1 2 3 33 33 H 1.08000 * 120.75639 * 0.02680 * 3 2 1 34 34 H 1.08005 * 120.46855 * 180.29155 * 4 3 2 35 35 H 1.08996 * 109.58692 * 246.15626 * 9 8 6 36 36 H 1.09001 * 109.58967 * 6.58629 * 9 8 6 37 37 H 1.08994 * 109.50010 * 174.58533 * 10 9 8 38 38 H 1.09003 * 109.49879 * 294.65388 * 10 9 8 39 39 H 1.09004 * 109.48566 * 178.64713 * 11 10 9 40 40 H 1.08997 * 109.43338 * 58.69140 * 11 10 9 41 41 H 0.96994 * 120.00551 * 180.02562 * 18 17 15 42 42 H 1.08992 * 109.47157 * 34.76718 * 23 14 12 43 43 H 1.09000 * 109.46863 * 154.76568 * 23 14 12 44 44 H 1.08996 * 109.47582 * 184.99736 * 24 23 14 45 45 H 1.09000 * 109.47692 * 305.00751 * 24 23 14 46 46 H 0.96697 * 113.99939 * 179.97438 * 25 24 23 47 47 H 1.09007 * 109.58611 * 113.84278 * 26 8 6 48 48 H 1.08997 * 109.70650 * 353.49493 * 26 8 6 49 49 H 1.09002 * 109.46544 * 90.00924 * 29 28 27 50 50 H 1.09003 * 109.46981 * 210.00199 * 29 28 27 51 51 H 1.08986 * 109.47660 * 330.00389 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1966 0.0000 4 6 3.5922 1.1521 0.0052 5 6 4.2294 -0.0868 -0.0006 6 6 5.7097 -0.1514 -0.0007 7 8 6.3622 0.8654 -0.1303 8 7 6.3324 -1.3380 0.1430 9 6 7.7805 -1.4549 -0.0762 10 6 8.4161 -2.0974 1.1607 11 6 7.7162 -3.4255 1.4582 12 6 6.2363 -3.1696 1.7526 13 1 6.1462 -2.4917 2.6014 14 7 5.5739 -4.4378 2.0672 15 6 5.5582 -5.4494 1.1443 16 1 6.4166 -5.6153 0.5102 17 6 4.4369 -6.2580 1.0199 18 7 3.2601 -5.8160 1.4101 19 14 4.5978 -7.9737 0.2988 20 1 4.8710 -8.9450 1.3883 21 1 3.3339 -8.3426 -0.3879 22 1 5.7166 -7.9973 -0.6774 23 6 4.9283 -4.6238 3.3690 24 6 5.9672 -5.0874 4.3919 25 8 6.9323 -4.0529 4.5930 26 6 5.5761 -2.5392 0.5224 27 7 3.5217 -1.2095 -0.0007 28 6 2.2065 -1.1961 -0.0006 29 6 1.4501 -2.4995 -0.0013 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6848 2.1419 0.0004 34 1 4.1694 2.0649 0.0101 35 1 7.9686 -2.0791 -0.9497 36 1 8.2074 -0.4644 -0.2335 37 1 9.4746 -2.2780 0.9736 38 1 8.3064 -1.4292 2.0149 39 1 8.1824 -3.8964 2.3236 40 1 7.8060 -4.0842 0.5944 41 1 2.4766 -6.3811 1.3235 42 1 4.4920 -3.6801 3.6963 43 1 4.1439 -5.3756 3.2814 44 1 5.4721 -5.3109 5.3369 45 1 6.4664 -5.9831 4.0225 46 1 7.6231 -4.2780 5.2311 47 1 5.5844 -3.2519 -0.3024 48 1 4.5477 -2.2664 0.7591 49 1 1.2678 -2.8142 1.0262 50 1 0.4980 -2.3667 -0.5150 51 1 2.0374 -3.2601 -0.5155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264077125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:15 Heat of formation + Delta-G solvation = -13.190352 kcal Electronic energy + Delta-G solvation = -32935.472774 eV Core-core repulsion = 28836.054018 eV Total energy + Delta-G solvation = -4099.418757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.68641 -39.08592 -37.37989 -36.13093 -34.49791 -33.98147 -32.87451 -32.00216 -31.21139 -29.55583 -28.21505 -27.36157 -27.03132 -24.81185 -24.08379 -22.71659 -22.50785 -21.57254 -20.49277 -19.84563 -18.90954 -17.13877 -16.84043 -16.36476 -16.05876 -15.51026 -15.24911 -15.08929 -14.70168 -14.45194 -14.25803 -14.07385 -13.64526 -13.56541 -13.39113 -13.12586 -13.05461 -12.87144 -12.74490 -12.60038 -12.37081 -12.30685 -11.91024 -11.77701 -11.60387 -11.30678 -11.21170 -11.04494 -10.96985 -10.63128 -10.51510 -10.37787 -10.15589 -10.04153 -9.86700 -9.78798 -9.61759 -9.51449 -9.15783 -8.64911 -8.54896 -8.28377 -7.97791 -6.52195 -5.79643 -3.30521 0.84292 1.36821 3.01919 3.34663 3.41704 3.43163 3.45974 4.04592 4.32986 4.49142 4.75872 4.84395 4.94183 4.96234 5.14677 5.26202 5.32702 5.42461 5.47943 5.52825 5.57944 5.60573 5.72793 5.78298 5.82972 5.93513 6.02554 6.09629 6.12140 6.14663 6.18799 6.25992 6.26637 6.34091 6.43287 6.49539 6.54498 6.57930 6.69658 6.77464 6.85058 6.96380 7.06667 7.17875 7.35210 7.48843 7.57875 7.85181 7.92197 8.09171 8.33185 8.51355 8.57664 9.21336 9.84502 10.45823 11.21242 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.004936 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.152291 B = 5671.099451 C = 7341.913552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.085 4.085 4 C -0.123 4.123 5 C 0.080 3.920 6 C 0.567 3.433 7 O -0.558 6.558 8 N -0.582 5.582 9 C 0.110 3.890 10 C -0.128 4.128 11 C -0.123 4.123 12 C 0.175 3.825 13 H 0.050 0.950 14 N -0.567 5.567 15 C -0.252 4.252 16 H 0.060 0.940 17 C 0.014 3.986 18 N -0.882 5.882 19 Si 0.889 3.111 20 H -0.289 1.289 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.156 3.844 24 C 0.054 3.946 25 O -0.567 6.567 26 C 0.069 3.931 27 N -0.426 5.426 28 C 0.132 3.868 29 C -0.105 4.105 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.103 0.897 44 H 0.021 0.979 45 H 0.040 0.960 46 H 0.355 0.645 47 H 0.069 0.931 48 H 0.143 0.857 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 8.892 0.222 9.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.144 4.144 5 C -0.058 4.058 6 C 0.354 3.646 7 O -0.437 6.437 8 N -0.313 5.313 9 C -0.012 4.012 10 C -0.167 4.167 11 C -0.163 4.163 12 C 0.067 3.933 13 H 0.068 0.932 14 N -0.286 5.286 15 C -0.382 4.382 16 H 0.077 0.923 17 C -0.186 4.186 18 N -0.524 5.524 19 Si 0.719 3.281 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.030 3.970 24 C -0.026 4.026 25 O -0.370 6.370 26 C -0.054 4.054 27 N -0.138 5.138 28 C -0.007 4.007 29 C -0.161 4.161 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.121 0.879 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.199 0.801 47 H 0.087 0.913 48 H 0.159 0.841 49 H 0.105 0.895 50 H 0.088 0.912 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.526 8.832 -0.322 9.192 hybrid contribution 0.079 -0.694 0.142 0.713 sum -2.447 8.138 -0.180 8.500 Atomic orbital electron populations 1.20841 0.90210 1.03186 1.02792 1.20945 0.97594 0.93647 1.00436 1.21407 0.93575 0.98130 0.97957 1.21980 0.94775 0.98735 0.98889 1.21225 0.94388 0.89653 1.00487 1.17936 0.85897 0.83494 0.77305 1.90695 1.66044 1.34280 1.52692 1.48212 1.08507 1.09490 1.65041 1.21625 0.80283 1.01423 0.97895 1.21880 0.98876 0.98472 0.97470 1.21926 0.97958 0.94962 1.01437 1.20592 0.90493 0.88010 0.94203 0.93217 1.43631 1.63710 1.09968 1.11305 1.18968 0.97141 1.06914 1.15145 0.92261 1.25064 0.94663 0.99562 0.99294 1.70046 0.97433 1.34802 1.50115 0.86516 0.77017 0.85786 0.78794 1.21623 1.21915 1.20460 1.20944 0.93021 1.00021 0.83059 1.23206 0.91470 0.90316 0.97611 1.86612 1.41295 1.43417 1.65628 1.23645 0.99150 0.83865 0.98719 1.67830 1.07377 1.28269 1.10309 1.21539 0.89584 0.95474 0.94086 1.20794 0.98472 0.92676 1.04201 0.90642 0.91539 0.90457 0.84567 0.83925 0.91757 0.89929 0.91837 0.92191 0.91936 0.92442 0.93772 0.95560 0.87912 0.96122 0.94149 0.80114 0.91251 0.84076 0.89501 0.91210 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.62 36.01 0.35 -0.69 16 2 C -0.12 -1.59 5.91 -104.36 -0.62 -2.21 16 3 C -0.09 -1.05 9.85 -39.31 -0.39 -1.43 16 4 C -0.12 -1.83 9.63 -39.05 -0.38 -2.20 16 5 C 0.08 1.44 6.59 -83.01 -0.55 0.90 16 6 C 0.57 11.08 7.64 -12.18 -0.09 10.99 16 7 O -0.56 -11.50 15.79 5.36 0.08 -11.42 16 8 N -0.58 -11.24 2.97 -173.76 -0.52 -11.76 16 9 C 0.11 1.88 6.44 -3.71 -0.02 1.86 16 10 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 11 C -0.12 -2.37 5.11 -26.69 -0.14 -2.51 16 12 C 0.18 3.75 2.16 -67.81 -0.15 3.60 16 13 H 0.05 1.14 7.64 -51.93 -0.40 0.74 16 14 N -0.57 -13.20 2.36 -165.54 -0.39 -13.59 16 15 C -0.25 -6.34 8.10 -15.06 -0.12 -6.46 16 16 H 0.06 1.54 6.90 -52.48 -0.36 1.18 16 17 C 0.01 0.37 4.85 -17.43 -0.08 0.28 16 18 N -0.88 -22.74 11.63 55.49 0.65 -22.09 16 19 Si 0.89 20.44 29.62 -169.99 -5.03 15.40 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.16 3.52 5.63 -4.05 -0.02 3.50 16 24 C 0.05 1.03 7.39 37.15 0.27 1.31 16 25 O -0.57 -10.27 12.27 -35.23 -0.43 -10.70 16 26 C 0.07 1.45 5.16 -3.72 -0.02 1.43 16 27 N -0.43 -7.87 6.04 -6.06 -0.04 -7.91 16 28 C 0.13 2.10 6.78 -82.61 -0.56 1.54 16 29 C -0.10 -1.57 9.77 36.00 0.35 -1.22 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.08 0.67 5.95 -51.93 -0.31 0.36 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.14 1.97 7.66 -52.48 -0.40 1.56 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 1.38 7.01 -51.93 -0.36 1.02 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 40 H 0.06 1.17 7.04 -51.93 -0.37 0.80 16 41 H 0.25 6.36 8.31 -40.82 -0.34 6.02 16 42 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 43 H 0.10 2.53 5.61 -51.93 -0.29 2.24 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.36 4.71 9.12 45.56 0.42 5.13 16 47 H 0.07 1.62 7.50 -51.92 -0.39 1.23 16 48 H 0.14 3.15 4.12 -80.75 -0.33 2.82 16 49 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 50 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 51 H 0.09 1.60 8.14 -51.94 -0.42 1.17 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -29.32 398.45 -9.28 -38.60 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -7.28 Total: 11.05 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -2.32 Total: 6.41 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.30 Total: -55.34 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.35 Total: -22.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.32 -9.28 -38.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264077125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.410 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds