Wall clock time and date at job start Wed Apr 1 2020 06:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38628 * 120.32630 * 2 1 4 4 C 1.38585 * 118.48469 * 179.75362 * 3 2 1 5 5 C 1.39311 * 119.06038 * 0.51254 * 4 3 2 6 6 C 1.48177 * 119.72116 * 179.75166 * 5 4 3 7 7 O 1.21510 * 119.99774 * 352.65338 * 6 5 4 8 8 N 1.34774 * 119.99661 * 172.65093 * 6 5 4 9 9 C 1.46925 * 120.62743 * 169.79329 * 8 6 5 10 10 C 1.53192 * 108.77542 * 126.36815 * 9 8 6 11 11 C 1.53043 * 109.33772 * 54.61721 * 10 9 8 12 12 C 1.53041 * 109.53963 * 298.68243 * 11 10 9 13 13 H 1.08998 * 109.49665 * 301.34648 * 12 11 10 14 14 N 1.46502 * 109.49575 * 181.28412 * 12 11 10 15 15 C 1.36935 * 119.99873 * 300.06450 * 14 12 11 16 16 H 1.08005 * 120.00297 * 36.55116 * 15 14 12 17 17 C 1.38809 * 119.99999 * 216.82536 * 15 14 12 18 18 N 1.31618 * 120.00304 * 23.52880 * 17 15 14 19 19 Si 1.86801 * 120.00263 * 203.52679 * 17 15 14 20 20 H 1.48504 * 109.47232 * 89.99695 * 19 17 15 21 21 H 1.48497 * 109.47300 * 210.00128 * 19 17 15 22 22 H 1.48499 * 109.47061 * 330.00229 * 19 17 15 23 23 C 1.46496 * 119.99866 * 120.06659 * 14 12 11 24 24 C 1.52995 * 109.47373 * 274.76298 * 23 14 12 25 25 O 1.42906 * 109.46864 * 65.00030 * 24 23 14 26 26 C 1.46921 * 120.63222 * 349.76702 * 8 6 5 27 27 N 1.32713 * 120.55438 * 359.48228 * 5 4 3 28 28 C 1.31524 * 121.64285 * 0.26756 * 27 5 4 29 29 C 1.50698 * 119.54577 * 179.97438 * 28 27 5 30 30 H 1.08996 * 109.46749 * 269.97587 * 1 2 3 31 31 H 1.09003 * 109.46724 * 29.97059 * 1 2 3 32 32 H 1.09000 * 109.47520 * 149.97250 * 1 2 3 33 33 H 1.08000 * 120.75639 * 0.02680 * 3 2 1 34 34 H 1.08005 * 120.46855 * 180.29155 * 4 3 2 35 35 H 1.08996 * 109.58692 * 246.15626 * 9 8 6 36 36 H 1.09001 * 109.58967 * 6.58629 * 9 8 6 37 37 H 1.08994 * 109.50010 * 174.58533 * 10 9 8 38 38 H 1.09003 * 109.49879 * 294.65388 * 10 9 8 39 39 H 1.09004 * 109.48566 * 178.64713 * 11 10 9 40 40 H 1.08997 * 109.43338 * 58.69140 * 11 10 9 41 41 H 0.96994 * 120.00551 * 180.02562 * 18 17 15 42 42 H 1.08992 * 109.47157 * 34.76718 * 23 14 12 43 43 H 1.09000 * 109.46863 * 154.76568 * 23 14 12 44 44 H 1.08996 * 109.47582 * 184.99736 * 24 23 14 45 45 H 1.09000 * 109.47692 * 305.00751 * 24 23 14 46 46 H 0.96697 * 113.99939 * 179.97438 * 25 24 23 47 47 H 1.09007 * 109.58611 * 113.84278 * 26 8 6 48 48 H 1.08997 * 109.70650 * 353.49493 * 26 8 6 49 49 H 1.09002 * 109.46544 * 90.00924 * 29 28 27 50 50 H 1.09003 * 109.46981 * 210.00199 * 29 28 27 51 51 H 1.08986 * 109.47660 * 330.00389 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1966 0.0000 4 6 3.5922 1.1521 0.0052 5 6 4.2294 -0.0868 -0.0006 6 6 5.7097 -0.1514 -0.0007 7 8 6.3622 0.8654 -0.1303 8 7 6.3324 -1.3380 0.1430 9 6 7.7805 -1.4549 -0.0762 10 6 8.4161 -2.0974 1.1607 11 6 7.7162 -3.4255 1.4582 12 6 6.2363 -3.1696 1.7526 13 1 6.1462 -2.4917 2.6014 14 7 5.5739 -4.4378 2.0672 15 6 5.5582 -5.4494 1.1443 16 1 6.4166 -5.6153 0.5102 17 6 4.4369 -6.2580 1.0199 18 7 3.2601 -5.8160 1.4101 19 14 4.5978 -7.9737 0.2988 20 1 4.8710 -8.9450 1.3883 21 1 3.3339 -8.3426 -0.3879 22 1 5.7166 -7.9973 -0.6774 23 6 4.9283 -4.6238 3.3690 24 6 5.9672 -5.0874 4.3919 25 8 6.9323 -4.0529 4.5930 26 6 5.5761 -2.5392 0.5224 27 7 3.5217 -1.2095 -0.0007 28 6 2.2065 -1.1961 -0.0006 29 6 1.4501 -2.4995 -0.0013 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6848 2.1419 0.0004 34 1 4.1694 2.0649 0.0101 35 1 7.9686 -2.0791 -0.9497 36 1 8.2074 -0.4644 -0.2335 37 1 9.4746 -2.2780 0.9736 38 1 8.3064 -1.4292 2.0149 39 1 8.1824 -3.8964 2.3236 40 1 7.8060 -4.0842 0.5944 41 1 2.4766 -6.3811 1.3235 42 1 4.4920 -3.6801 3.6963 43 1 4.1439 -5.3756 3.2814 44 1 5.4721 -5.3109 5.3369 45 1 6.4664 -5.9831 4.0225 46 1 7.6231 -4.2780 5.2311 47 1 5.5844 -3.2519 -0.3024 48 1 4.5477 -2.2664 0.7591 49 1 1.2678 -2.8142 1.0262 50 1 0.4980 -2.3667 -0.5150 51 1 2.0374 -3.2601 -0.5155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264077125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:14 Heat of formation + Delta-G solvation = -31.246366 kcal Electronic energy + Delta-G solvation = -32936.255742 eV Core-core repulsion = 28836.054018 eV Total energy + Delta-G solvation = -4100.201724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98402 -40.49124 -39.02029 -37.66118 -36.18484 -35.13039 -34.06195 -33.61492 -32.91607 -31.20363 -29.28441 -28.90837 -28.48828 -26.24287 -25.91535 -24.00357 -23.82213 -22.96424 -22.01537 -21.54311 -20.39342 -18.54439 -18.44139 -17.98583 -17.50284 -16.95754 -16.74896 -16.40250 -16.28070 -16.10726 -15.58986 -15.45405 -15.20617 -15.04098 -14.97944 -14.51912 -14.31882 -14.27063 -13.97058 -13.84360 -13.70379 -13.59733 -13.24406 -13.15670 -13.03046 -12.92011 -12.77609 -12.69263 -12.36810 -12.26870 -12.20789 -12.05422 -11.85622 -11.63614 -11.51457 -11.33490 -11.23443 -10.72436 -10.67870 -10.43508 -9.85877 -9.75184 -9.52309 -8.41593 -7.73318 -5.27870 -0.36173 0.24776 1.48576 1.53141 1.58730 1.63731 1.99256 2.57591 2.78754 3.03525 3.32028 3.50819 3.71016 3.78794 3.84114 3.92113 3.96841 4.09388 4.11833 4.25003 4.25564 4.44716 4.56175 4.58840 4.61144 4.65093 4.68290 4.71004 4.74720 4.78666 4.79245 4.91969 4.94342 5.02839 5.06629 5.11546 5.14042 5.20933 5.24973 5.30986 5.34947 5.37502 5.56617 5.62775 5.64675 5.69445 5.83085 5.96502 6.39446 6.56635 6.77991 7.09298 7.10809 7.27718 7.94661 8.53388 9.24213 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.004936 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.152291 B = 5671.099451 C = 7341.913552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 C -0.075 4.075 4 C -0.118 4.118 5 C 0.043 3.957 6 C 0.562 3.438 7 O -0.574 6.574 8 N -0.588 5.588 9 C 0.106 3.894 10 C -0.116 4.116 11 C -0.112 4.112 12 C 0.179 3.821 13 H 0.033 0.967 14 N -0.575 5.575 15 C -0.255 4.255 16 H 0.048 0.952 17 C -0.022 4.022 18 N -0.899 5.899 19 Si 0.942 3.058 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.280 1.280 23 C 0.157 3.843 24 C 0.069 3.931 25 O -0.578 6.578 26 C 0.087 3.913 27 N -0.461 5.461 28 C 0.106 3.894 29 C -0.093 4.093 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.183 0.817 34 H 0.152 0.848 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.251 0.749 42 H 0.012 0.988 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.031 0.969 46 H 0.380 0.620 47 H 0.038 0.962 48 H 0.134 0.866 49 H 0.072 0.928 50 H 0.106 0.894 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 10.359 0.436 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.100 4.100 4 C -0.139 4.139 5 C -0.094 4.094 6 C 0.350 3.650 7 O -0.455 6.455 8 N -0.318 5.318 9 C -0.016 4.016 10 C -0.155 4.155 11 C -0.152 4.152 12 C 0.071 3.929 13 H 0.052 0.948 14 N -0.295 5.295 15 C -0.385 4.385 16 H 0.066 0.934 17 C -0.220 4.220 18 N -0.542 5.542 19 Si 0.771 3.229 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.206 1.206 23 C 0.030 3.970 24 C -0.011 4.011 25 O -0.385 6.385 26 C -0.036 4.036 27 N -0.173 5.173 28 C -0.034 4.034 29 C -0.150 4.150 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.200 0.800 34 H 0.170 0.830 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.227 0.773 47 H 0.056 0.944 48 H 0.150 0.850 49 H 0.091 0.909 50 H 0.125 0.875 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.273 10.302 -0.091 10.810 hybrid contribution 0.248 -1.060 0.079 1.092 sum -3.025 9.242 -0.012 9.724 Atomic orbital electron populations 1.20970 0.86987 1.04900 1.04065 1.21353 0.99718 0.92451 0.97360 1.21896 0.92400 0.99784 0.95913 1.22202 0.96254 0.97707 0.97765 1.21143 0.93564 0.90905 1.03786 1.18297 0.86950 0.83129 0.76576 1.90658 1.66742 1.34468 1.53606 1.48246 1.09335 1.08976 1.65240 1.21783 0.79217 1.02038 0.98521 1.21800 1.00287 0.96441 0.96938 1.21765 0.96530 0.96293 1.00576 1.20584 0.91808 0.86982 0.93488 0.94848 1.43737 1.63951 1.10307 1.11505 1.18964 0.96689 1.07539 1.15306 0.93405 1.25559 0.94491 1.01868 1.00125 1.70142 0.97655 1.35377 1.51000 0.85693 0.76488 0.82651 0.78043 1.21433 1.22236 1.20563 1.20836 0.93710 0.98627 0.83824 1.22823 0.90957 0.89721 0.97597 1.86542 1.41993 1.43090 1.66825 1.23274 0.99341 0.83829 0.97206 1.67565 1.09016 1.29267 1.11477 1.21770 0.89068 0.96990 0.95560 1.20692 0.99481 0.91637 1.03207 0.89314 0.88689 0.89922 0.79959 0.82982 0.91076 0.89207 0.88589 0.92568 0.92252 0.93778 0.94001 0.96923 0.90138 0.93532 0.95043 0.77261 0.94384 0.84961 0.90942 0.87547 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.62 71.24 0.69 -0.93 16 2 C -0.11 -2.48 5.91 -19.69 -0.12 -2.60 16 3 C -0.07 -1.60 9.85 22.45 0.22 -1.38 16 4 C -0.12 -3.38 9.63 22.61 0.22 -3.16 16 5 C 0.04 1.56 6.59 41.91 0.28 1.84 16 6 C 0.56 22.58 7.64 86.89 0.66 23.25 16 7 O -0.57 -23.87 15.79 -3.75 -0.06 -23.93 16 8 N -0.59 -23.51 2.97 -821.96 -2.44 -25.96 16 9 C 0.11 3.63 6.44 86.36 0.56 4.19 16 10 C -0.12 -3.74 6.08 30.67 0.19 -3.55 16 11 C -0.11 -4.37 5.11 30.62 0.16 -4.21 16 12 C 0.18 7.95 2.16 45.07 0.10 8.05 16 13 H 0.03 1.58 7.64 -2.39 -0.02 1.56 16 14 N -0.57 -27.79 2.36 -677.64 -1.60 -29.39 16 15 C -0.25 -13.27 8.10 84.03 0.68 -12.59 16 16 H 0.05 2.58 6.90 -2.91 -0.02 2.56 16 17 C -0.02 -1.13 4.85 84.86 0.41 -0.72 16 18 N -0.90 -48.04 11.63 21.65 0.25 -47.79 16 19 Si 0.94 42.90 29.62 68.60 2.03 44.93 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 C 0.16 7.26 5.63 86.38 0.49 7.75 16 24 C 0.07 2.62 7.39 71.98 0.53 3.15 16 25 O -0.58 -20.41 12.27 -148.98 -1.83 -22.24 16 26 C 0.09 3.88 5.16 86.36 0.45 4.33 16 27 N -0.46 -17.76 6.04 -173.08 -1.05 -18.81 16 28 C 0.11 3.38 6.78 42.68 0.29 3.67 16 29 C -0.09 -2.89 9.77 71.24 0.70 -2.19 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.09 0.89 8.09 -2.39 -0.02 0.87 16 32 H 0.08 1.13 5.95 -2.39 -0.01 1.11 16 33 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.15 3.97 7.66 -2.91 -0.02 3.95 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.09 2.96 7.01 -2.39 -0.02 2.95 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 2.33 7.62 -2.38 -0.02 2.32 16 40 H 0.04 1.82 7.04 -2.39 -0.02 1.81 16 41 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 42 H 0.01 0.60 8.02 -2.39 -0.02 0.58 16 43 H 0.08 4.11 5.61 -2.39 -0.01 4.10 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.38 9.33 9.12 -74.06 -0.68 8.66 16 47 H 0.04 1.90 7.50 -2.38 -0.02 1.88 16 48 H 0.13 6.31 4.12 -59.30 -0.24 6.07 16 49 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.11 2.38 5.93 -2.39 -0.01 2.36 16 51 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -67.15 398.45 1.84 -65.31 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.04 Total: 32.98 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 6.49 Total: 24.89 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -4.84 Total: -121.94 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.89 Total: -46.17 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -67.15 1.84 -65.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264077125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.068 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds