Wall clock time and date at job start Wed Apr 1 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00086 * 2 1 4 4 C 1.50701 * 109.47454 * 180.02562 * 3 2 1 5 5 C 1.38348 * 120.35337 * 89.99319 * 4 3 2 6 6 N 1.31924 * 121.08295 * 179.97438 * 5 4 3 7 7 C 1.31689 * 121.88090 * 0.03146 * 6 5 4 8 8 C 1.39526 * 120.56163 * 0.26785 * 7 6 5 9 9 C 1.47847 * 120.55607 * 179.70575 * 8 7 6 10 10 O 1.21548 * 120.00028 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00159 * 359.97438 * 9 8 7 12 12 C 1.46495 * 120.00427 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47489 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.49539 * 299.93504 * 13 12 11 15 15 C 1.53045 * 109.49804 * 179.84100 * 13 12 11 16 16 C 1.53047 * 109.53657 * 178.68378 * 15 13 12 17 17 C 1.53193 * 109.31514 * 61.36129 * 16 15 13 18 18 N 1.46924 * 108.77484 * 305.36604 * 17 16 15 19 19 C 1.36939 * 120.63160 * 233.63058 * 18 17 16 20 20 H 1.08000 * 119.99865 * 27.67178 * 19 18 17 21 21 C 1.38809 * 120.00392 * 207.66811 * 19 18 17 22 22 N 1.31626 * 119.99924 * 17.36029 * 21 19 18 23 23 Si 1.86792 * 120.00313 * 197.36013 * 21 19 18 24 24 H 1.48497 * 109.47492 * 59.99919 * 23 21 19 25 25 H 1.48502 * 109.47265 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47191 * 300.00205 * 23 21 19 27 27 C 1.46927 * 118.73996 * 53.60864 * 18 17 16 28 28 C 1.38352 * 120.34423 * 269.97455 * 4 3 2 29 29 H 1.08997 * 109.47279 * 60.00585 * 1 2 3 30 30 H 1.08999 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47244 * 299.99964 * 1 2 3 32 32 H 1.09002 * 109.47725 * 59.99873 * 3 2 1 33 33 H 1.09008 * 109.46908 * 299.99884 * 3 2 1 34 34 H 1.08009 * 119.45996 * 359.97438 * 5 4 3 35 35 H 1.07992 * 119.72311 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99856 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.46755 * 300.00177 * 12 11 9 38 38 H 1.09005 * 109.47156 * 59.99700 * 12 11 9 39 39 H 1.08996 * 109.47042 * 60.00125 * 14 13 12 40 40 H 1.09002 * 109.47141 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47071 * 299.99783 * 14 13 12 42 42 H 1.08998 * 109.45396 * 298.69650 * 15 13 12 43 43 H 1.08995 * 109.46164 * 58.65762 * 15 13 12 44 44 H 1.09000 * 109.49237 * 301.41175 * 16 15 13 45 45 H 1.08992 * 109.51983 * 181.33252 * 16 15 13 46 46 H 1.08996 * 109.58277 * 185.58054 * 17 16 15 47 47 H 1.09000 * 109.58610 * 65.15408 * 17 16 15 48 48 H 0.96996 * 119.99894 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58925 * 186.60515 * 27 18 17 50 50 H 1.08998 * 109.58834 * 66.18237 * 27 18 17 51 51 H 1.08001 * 120.86137 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2089 1.1314 -1.1948 6 7 5.5240 1.0278 -1.2121 7 6 6.2319 0.9716 -0.1031 8 6 5.6042 1.0150 1.1422 9 6 6.3987 0.9454 2.3872 10 8 5.8414 0.9846 3.4667 11 7 7.7408 0.8386 2.3251 12 6 8.5280 0.7691 3.5586 13 6 10.0131 0.6531 3.2101 14 6 10.2467 -0.6147 2.3859 15 6 10.8363 0.5844 4.4984 16 6 12.3193 0.4353 4.1509 17 6 12.7772 1.6577 3.3490 18 7 11.8971 1.8152 2.1832 19 6 12.4203 1.9015 0.9206 20 1 13.3660 1.4314 0.6947 21 6 11.7352 2.5932 -0.0689 22 7 10.7830 3.4406 0.2595 23 14 12.1643 2.3213 -1.8664 24 1 11.9534 0.8934 -2.2152 25 1 11.2939 3.1720 -2.7173 26 1 13.5865 2.6819 -2.0958 27 6 10.4449 1.8779 2.3976 28 6 4.2098 1.1317 1.1931 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.6671 1.1739 -2.1282 35 1 7.3071 0.8865 -0.1580 36 1 8.1855 0.8078 1.4636 37 1 8.3625 1.6720 4.1465 38 1 8.2209 -0.1023 4.1370 39 1 9.6611 -0.5643 1.4679 40 1 11.3050 -0.6972 2.1382 41 1 9.9404 -1.4860 2.9649 42 1 10.6882 1.4987 5.0731 43 1 10.5140 -0.2724 5.0901 44 1 12.4645 -0.4658 3.5551 45 1 12.9029 0.3626 5.0685 46 1 13.8042 1.5113 3.0145 47 1 12.7179 2.5482 3.9747 48 1 10.3040 3.9236 -0.4319 49 1 9.9330 1.8769 1.4353 50 1 10.1953 2.7865 2.9456 51 1 3.6916 1.1725 2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270966470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:13 Heat of formation + Delta-G solvation = -28.904624 kcal Electronic energy + Delta-G solvation = -31266.308602 eV Core-core repulsion = 27166.208424 eV Total energy + Delta-G solvation = -4100.100179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.75496 -39.38427 -38.28234 -37.93086 -34.87787 -33.39384 -33.09034 -32.28178 -31.13570 -29.88921 -27.79979 -26.67071 -25.97113 -25.83367 -25.32565 -23.88469 -22.81490 -22.16738 -20.63797 -20.20127 -18.28307 -17.61731 -17.09923 -16.80284 -16.74603 -16.58107 -15.79505 -15.60305 -15.24538 -15.16695 -14.79372 -14.14492 -13.94711 -13.88194 -13.75251 -13.38093 -13.28373 -13.25040 -13.02912 -12.76100 -12.75275 -12.31086 -12.20987 -12.15962 -11.79574 -11.65024 -11.33500 -10.97452 -10.86899 -10.66529 -10.42965 -10.22664 -10.18373 -10.11471 -10.09399 -9.98453 -9.84013 -9.61655 -9.43777 -9.40489 -9.30124 -8.76588 -8.50225 -6.69329 -5.82425 -3.24384 0.54061 0.99070 2.87505 3.30147 3.36125 3.43679 3.44252 3.47031 3.89493 4.20303 4.46549 4.47885 4.55763 4.73105 4.74156 4.88959 4.95780 5.01170 5.07307 5.10030 5.26625 5.31406 5.34121 5.40867 5.42929 5.49392 5.56900 5.75546 5.88249 5.90815 5.98653 6.01517 6.07246 6.14851 6.22770 6.37235 6.39706 6.41575 6.52032 6.57938 6.69881 6.73544 6.81032 6.85501 6.94645 7.02456 7.25582 7.53251 7.68269 7.73829 7.75752 8.32960 8.40196 9.17435 9.80703 10.38024 11.25341 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.002985 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.078079 B = 9377.866741 C =11183.983704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.109 3.891 4 C -0.158 4.158 5 C 0.141 3.859 6 N -0.484 5.484 7 C 0.147 3.853 8 C -0.184 4.184 9 C 0.562 3.438 10 O -0.545 6.545 11 N -0.709 5.709 12 C 0.136 3.864 13 C -0.104 4.104 14 C -0.127 4.127 15 C -0.095 4.095 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.897 3.103 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.184 3.816 28 C 0.003 3.997 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.405 0.595 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.016 0.984 48 H 0.254 0.746 49 H 0.088 0.912 50 H 0.018 0.982 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.498 -5.922 1.602 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.033 3.967 4 C -0.160 4.160 5 C -0.017 4.017 6 N -0.191 5.191 7 C -0.011 4.011 8 C -0.189 4.189 9 C 0.348 3.652 10 O -0.424 6.424 11 N -0.360 5.360 12 C 0.013 3.987 13 C -0.106 4.106 14 C -0.184 4.184 15 C -0.133 4.133 16 C -0.174 4.174 17 C 0.017 3.983 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.727 3.273 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.058 3.942 28 C -0.023 4.023 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.243 0.757 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.034 0.966 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.036 0.964 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.381 -5.969 1.446 16.562 hybrid contribution -0.224 0.269 -0.569 0.668 sum -15.606 -5.700 0.878 16.637 Atomic orbital electron populations 1.22773 0.80713 1.02999 1.00115 1.87984 1.19826 1.27227 1.95441 1.21217 0.88659 0.85313 1.01556 1.20525 0.95728 1.05485 0.94286 1.22906 0.90032 0.91248 0.97474 1.67793 1.07675 1.12709 1.30951 1.23182 1.00642 0.90489 0.86756 1.21065 0.95079 1.07599 0.95152 1.17936 0.82342 0.76856 0.88112 1.90743 1.71202 1.50935 1.29543 1.46004 1.05816 1.72988 1.11200 1.21436 0.90427 1.01459 0.85427 1.21559 0.91618 1.00023 0.97391 1.21735 1.03161 0.95159 0.98356 1.21340 0.95582 1.00552 0.95804 1.22050 0.95310 1.00836 0.99253 1.20929 0.94246 0.93821 0.89307 1.43968 1.00479 1.84846 1.01718 1.19121 1.06087 1.27013 0.85734 0.91778 1.24999 0.99758 0.96272 0.98479 1.70026 1.26426 1.26290 1.31868 0.86453 0.77835 0.77742 0.85281 1.20953 1.21561 1.20990 1.20805 0.84843 0.90243 0.98300 1.21585 0.92456 0.89528 0.98775 0.93888 0.89456 0.93877 0.91862 0.91761 0.82298 0.81910 0.75706 0.91564 0.91993 0.93754 0.90837 0.94434 0.92530 0.93353 0.91934 0.93196 0.92932 0.96570 0.93580 0.89426 0.96371 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.87 10.69 -35.23 -0.38 -4.25 16 3 C 0.11 0.95 6.08 36.01 0.22 1.17 16 4 C -0.16 -1.78 5.52 -104.54 -0.58 -2.36 16 5 C 0.14 1.65 10.85 -17.47 -0.19 1.46 16 6 N -0.48 -6.95 10.35 -12.91 -0.13 -7.08 16 7 C 0.15 2.14 10.71 -17.13 -0.18 1.95 16 8 C -0.18 -2.69 5.89 -104.82 -0.62 -3.30 16 9 C 0.56 9.26 7.78 -12.33 -0.10 9.17 16 10 O -0.55 -10.28 16.42 5.32 0.09 -10.19 16 11 N -0.71 -11.38 4.95 -61.25 -0.30 -11.68 16 12 C 0.14 2.21 4.57 -4.05 -0.02 2.20 16 13 C -0.10 -1.78 0.53 -154.39 -0.08 -1.86 16 14 C -0.13 -2.11 7.82 37.16 0.29 -1.82 16 15 C -0.09 -1.50 4.71 -26.68 -0.13 -1.63 16 16 C -0.14 -2.22 5.74 -26.61 -0.15 -2.37 16 17 C 0.14 2.86 6.52 -3.71 -0.02 2.84 16 18 N -0.59 -13.69 2.43 -172.32 -0.42 -14.11 16 19 C -0.25 -6.45 9.58 -15.06 -0.14 -6.59 16 20 H 0.06 1.65 7.89 -52.49 -0.41 1.23 16 21 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 22 N -0.90 -24.65 11.19 55.49 0.62 -24.03 16 23 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 C 0.18 4.00 3.73 -3.71 -0.01 3.99 16 28 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.06 0.42 8.09 -51.92 -0.42 0.00 16 34 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.16 2.28 6.42 -52.49 -0.34 1.94 16 36 H 0.41 6.44 4.29 -40.82 -0.17 6.26 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.73 6.87 -51.93 -0.36 0.37 16 40 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.04 6.34 -51.93 -0.33 0.71 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 49 H 0.09 2.06 4.94 -51.93 -0.26 1.81 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.15 1.81 7.74 -52.49 -0.41 1.41 16 LS Contribution 402.77 15.07 6.07 6.07 Total: -1.00 -30.90 402.77 -8.58 -39.48 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.04 Total: 6.11 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.05 Total: 3.82 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.24 Total: -56.90 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.29 Total: -14.44 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.90 -8.58 -39.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270966470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.580 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds