Wall clock time and date at job start Wed Apr 1 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00086 * 2 1 4 4 C 1.50701 * 109.47454 * 180.02562 * 3 2 1 5 5 C 1.38348 * 120.35337 * 89.99319 * 4 3 2 6 6 N 1.31924 * 121.08295 * 179.97438 * 5 4 3 7 7 C 1.31689 * 121.88090 * 0.03146 * 6 5 4 8 8 C 1.39526 * 120.56163 * 0.26785 * 7 6 5 9 9 C 1.47847 * 120.55607 * 179.70575 * 8 7 6 10 10 O 1.21548 * 120.00028 * 179.97438 * 9 8 7 11 11 N 1.34778 * 120.00159 * 359.97438 * 9 8 7 12 12 C 1.46495 * 120.00427 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47489 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.49539 * 299.93504 * 13 12 11 15 15 C 1.53045 * 109.49804 * 179.84100 * 13 12 11 16 16 C 1.53047 * 109.53657 * 178.68378 * 15 13 12 17 17 C 1.53193 * 109.31514 * 61.36129 * 16 15 13 18 18 N 1.46924 * 108.77484 * 305.36604 * 17 16 15 19 19 C 1.36939 * 120.63160 * 233.63058 * 18 17 16 20 20 H 1.08000 * 119.99865 * 27.67178 * 19 18 17 21 21 C 1.38809 * 120.00392 * 207.66811 * 19 18 17 22 22 N 1.31626 * 119.99924 * 17.36029 * 21 19 18 23 23 Si 1.86792 * 120.00313 * 197.36013 * 21 19 18 24 24 H 1.48497 * 109.47492 * 59.99919 * 23 21 19 25 25 H 1.48502 * 109.47265 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47191 * 300.00205 * 23 21 19 27 27 C 1.46927 * 118.73996 * 53.60864 * 18 17 16 28 28 C 1.38352 * 120.34423 * 269.97455 * 4 3 2 29 29 H 1.08997 * 109.47279 * 60.00585 * 1 2 3 30 30 H 1.08999 * 109.47065 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47244 * 299.99964 * 1 2 3 32 32 H 1.09002 * 109.47725 * 59.99873 * 3 2 1 33 33 H 1.09008 * 109.46908 * 299.99884 * 3 2 1 34 34 H 1.08009 * 119.45996 * 359.97438 * 5 4 3 35 35 H 1.07992 * 119.72311 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99856 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.46755 * 300.00177 * 12 11 9 38 38 H 1.09005 * 109.47156 * 59.99700 * 12 11 9 39 39 H 1.08996 * 109.47042 * 60.00125 * 14 13 12 40 40 H 1.09002 * 109.47141 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47071 * 299.99783 * 14 13 12 42 42 H 1.08998 * 109.45396 * 298.69650 * 15 13 12 43 43 H 1.08995 * 109.46164 * 58.65762 * 15 13 12 44 44 H 1.09000 * 109.49237 * 301.41175 * 16 15 13 45 45 H 1.08992 * 109.51983 * 181.33252 * 16 15 13 46 46 H 1.08996 * 109.58277 * 185.58054 * 17 16 15 47 47 H 1.09000 * 109.58610 * 65.15408 * 17 16 15 48 48 H 0.96996 * 119.99894 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58925 * 186.60515 * 27 18 17 50 50 H 1.08998 * 109.58834 * 66.18237 * 27 18 17 51 51 H 1.08001 * 120.86137 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2089 1.1314 -1.1948 6 7 5.5240 1.0278 -1.2121 7 6 6.2319 0.9716 -0.1031 8 6 5.6042 1.0150 1.1422 9 6 6.3987 0.9454 2.3872 10 8 5.8414 0.9846 3.4667 11 7 7.7408 0.8386 2.3251 12 6 8.5280 0.7691 3.5586 13 6 10.0131 0.6531 3.2101 14 6 10.2467 -0.6147 2.3859 15 6 10.8363 0.5844 4.4984 16 6 12.3193 0.4353 4.1509 17 6 12.7772 1.6577 3.3490 18 7 11.8971 1.8152 2.1832 19 6 12.4203 1.9015 0.9206 20 1 13.3660 1.4314 0.6947 21 6 11.7352 2.5932 -0.0689 22 7 10.7830 3.4406 0.2595 23 14 12.1643 2.3213 -1.8664 24 1 11.9534 0.8934 -2.2152 25 1 11.2939 3.1720 -2.7173 26 1 13.5865 2.6819 -2.0958 27 6 10.4449 1.8779 2.3976 28 6 4.2098 1.1317 1.1931 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.6671 1.1739 -2.1282 35 1 7.3071 0.8865 -0.1580 36 1 8.1855 0.8078 1.4636 37 1 8.3625 1.6720 4.1465 38 1 8.2209 -0.1023 4.1370 39 1 9.6611 -0.5643 1.4679 40 1 11.3050 -0.6972 2.1382 41 1 9.9404 -1.4860 2.9649 42 1 10.6882 1.4987 5.0731 43 1 10.5140 -0.2724 5.0901 44 1 12.4645 -0.4658 3.5551 45 1 12.9029 0.3626 5.0685 46 1 13.8042 1.5113 3.0145 47 1 12.7179 2.5482 3.9747 48 1 10.3040 3.9236 -0.4319 49 1 9.9330 1.8769 1.4353 50 1 10.1953 2.7865 2.9456 51 1 3.6916 1.1725 2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270966470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:12 Heat of formation + Delta-G solvation = -47.866347 kcal Electronic energy + Delta-G solvation = -31267.130844 eV Core-core repulsion = 27166.208424 eV Total energy + Delta-G solvation = -4100.922421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85905 -40.67243 -39.64215 -38.68552 -36.39397 -34.98029 -34.10540 -33.54611 -32.55474 -31.56916 -28.49007 -28.01774 -27.48811 -27.04281 -26.50289 -25.06813 -23.92699 -23.69676 -22.13455 -21.44828 -19.71489 -18.88788 -18.47864 -18.12229 -17.71707 -17.38232 -16.88477 -16.72626 -16.42986 -16.35664 -16.11551 -15.74597 -15.41574 -15.22694 -15.05865 -14.77657 -14.72634 -14.32283 -14.25507 -14.00692 -13.78479 -13.72891 -13.34969 -13.12010 -13.01182 -12.93425 -12.70183 -12.55340 -12.36629 -12.27873 -12.16537 -11.84420 -11.72280 -11.48538 -11.39586 -11.09587 -11.03544 -10.96366 -10.73062 -10.51976 -10.48473 -10.35324 -10.05766 -8.60238 -7.81903 -5.25907 -0.51013 -0.01717 1.48980 1.52100 1.57581 1.69386 2.06318 2.54361 2.56444 3.02238 3.21499 3.30768 3.58320 3.61825 3.67845 3.71730 3.81521 3.95226 3.99993 4.04446 4.05298 4.26031 4.38122 4.47148 4.52788 4.53911 4.55780 4.57824 4.62659 4.73537 4.75294 4.81725 4.86843 4.90672 5.00044 5.02982 5.05359 5.12550 5.19195 5.26035 5.32703 5.39884 5.41539 5.47253 5.51274 5.64747 5.73985 5.79716 6.17374 6.37273 6.43434 6.70592 7.02131 7.20484 7.91702 8.43921 9.22756 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.002985 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.078079 B = 9377.866741 C =11183.983704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.109 3.891 4 C -0.149 4.149 5 C 0.142 3.858 6 N -0.506 5.506 7 C 0.138 3.862 8 C -0.197 4.197 9 C 0.563 3.437 10 O -0.572 6.572 11 N -0.708 5.708 12 C 0.141 3.859 13 C -0.091 4.091 14 C -0.121 4.121 15 C -0.094 4.094 16 C -0.124 4.124 17 C 0.136 3.864 18 N -0.603 5.603 19 C -0.254 4.254 20 H 0.063 0.937 21 C -0.042 4.042 22 N -0.928 5.928 23 Si 0.954 3.046 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.282 1.282 27 C 0.195 3.805 28 C -0.003 4.003 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.193 0.807 35 H 0.158 0.842 36 H 0.406 0.594 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.051 0.949 47 H 0.007 0.993 48 H 0.248 0.752 49 H 0.065 0.935 50 H -0.017 1.017 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.741 -7.369 1.577 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.033 3.967 4 C -0.151 4.151 5 C -0.015 4.015 6 N -0.214 5.214 7 C -0.019 4.019 8 C -0.203 4.203 9 C 0.350 3.650 10 O -0.454 6.454 11 N -0.359 5.359 12 C 0.017 3.983 13 C -0.093 4.093 14 C -0.178 4.178 15 C -0.132 4.132 16 C -0.162 4.162 17 C 0.011 3.989 18 N -0.326 5.326 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.238 4.238 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.208 1.208 27 C 0.068 3.932 28 C -0.029 4.029 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.209 0.791 35 H 0.175 0.825 36 H 0.243 0.757 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.025 0.975 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.001 0.999 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.604 -7.436 1.437 18.250 hybrid contribution 0.136 0.760 -0.560 0.954 sum -16.468 -6.676 0.877 17.792 Atomic orbital electron populations 1.22958 0.78916 1.03873 1.01341 1.87931 1.21825 1.27860 1.95721 1.21321 0.86538 0.85358 1.03489 1.20826 0.97447 1.03553 0.93285 1.23484 0.89278 0.89663 0.99075 1.67808 1.09118 1.13617 1.30824 1.23106 1.00623 0.91205 0.86997 1.20938 0.95727 1.09389 0.94208 1.18201 0.82330 0.76036 0.88446 1.90715 1.71624 1.52437 1.30598 1.46024 1.05913 1.72735 1.11188 1.21380 0.89777 1.01582 0.85521 1.21357 0.92365 0.97970 0.97640 1.21663 1.02032 0.95632 0.98460 1.21370 0.94978 1.01778 0.95086 1.21926 0.95897 0.98593 0.99834 1.21102 0.93889 0.95334 0.88595 1.44210 1.01463 1.84927 1.02003 1.19377 1.05924 1.26116 0.87027 0.91913 1.25595 1.00156 0.96464 1.01568 1.70174 1.27566 1.27413 1.32305 0.85554 0.77233 0.77598 0.81343 1.20229 1.22355 1.20815 1.20586 0.84151 0.91001 0.97418 1.21759 0.91862 0.89433 0.99847 0.92286 0.88875 0.92998 0.90700 0.89096 0.79061 0.82483 0.75679 0.92751 0.90339 0.94309 0.92413 0.91735 0.92916 0.90204 0.91723 0.90194 0.93077 0.97482 0.94304 0.91647 0.99906 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.39 10.69 -148.98 -1.59 -8.98 16 3 C 0.11 1.62 6.08 71.24 0.43 2.05 16 4 C -0.15 -3.14 5.52 -19.81 -0.11 -3.24 16 5 C 0.14 3.11 10.85 84.71 0.92 4.03 16 6 N -0.51 -14.36 10.35 -194.76 -2.01 -16.37 16 7 C 0.14 4.12 10.71 85.03 0.91 5.03 16 8 C -0.20 -5.88 5.89 -19.99 -0.12 -5.99 16 9 C 0.56 18.95 7.78 86.79 0.68 19.63 16 10 O -0.57 -21.84 16.42 -3.87 -0.06 -21.91 16 11 N -0.71 -23.25 4.95 -465.99 -2.31 -25.56 16 12 C 0.14 4.55 4.57 86.38 0.39 4.95 16 13 C -0.09 -3.09 0.53 -52.10 -0.03 -3.12 16 14 C -0.12 -3.87 7.82 71.98 0.56 -3.30 16 15 C -0.09 -2.80 4.71 30.62 0.14 -2.65 16 16 C -0.12 -3.78 5.74 30.67 0.18 -3.61 16 17 C 0.14 5.41 6.52 86.36 0.56 5.97 16 18 N -0.60 -28.55 2.43 -699.11 -1.70 -30.25 16 19 C -0.25 -13.31 9.58 84.03 0.81 -12.51 16 20 H 0.06 3.25 7.89 -2.91 -0.02 3.22 16 21 C -0.04 -2.25 4.91 84.86 0.42 -1.83 16 22 N -0.93 -52.52 11.19 21.65 0.24 -52.28 16 23 Si 0.95 43.66 29.59 68.60 2.03 45.69 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 C 0.19 8.70 3.73 86.36 0.32 9.02 16 28 C 0.00 -0.07 9.39 22.73 0.21 0.15 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 33 H 0.09 0.87 8.09 -2.38 -0.02 0.85 16 34 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.16 4.68 6.42 -2.91 -0.02 4.66 16 36 H 0.41 13.42 4.29 -92.71 -0.40 13.03 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.04 1.26 6.87 -2.39 -0.02 1.25 16 40 H 0.06 2.05 5.97 -2.39 -0.01 2.03 16 41 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.06 1.99 6.34 -2.39 -0.02 1.97 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 49 H 0.07 3.21 4.94 -2.39 -0.01 3.20 16 50 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 51 H 0.15 3.67 7.74 -2.91 -0.02 3.65 16 Total: -1.00 -67.99 402.77 2.66 -65.33 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.54 Total: 28.27 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 7.53 Total: 16.06 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -5.78 Total: -124.46 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -1.66 Total: -30.88 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -67.99 2.66 -65.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270966470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.459 kcal (2) G-P(sol) polarization free energy of solvation -67.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds