Wall clock time and date at job start Wed Apr 1 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38166 * 119.55730 * 2 1 4 4 C 1.39792 * 119.00609 * 179.97438 * 3 2 1 5 5 C 1.48152 * 120.92479 * 179.72753 * 4 3 2 6 6 O 1.21511 * 120.00057 * 310.56348 * 5 4 3 7 7 N 1.34772 * 119.99900 * 130.56844 * 5 4 3 8 8 C 1.46926 * 120.63145 * 3.52095 * 7 5 4 9 9 C 1.52763 * 109.00952 * 233.58142 * 8 7 5 10 10 C 1.53038 * 109.38537 * 305.59473 * 9 8 7 11 11 O 1.42897 * 109.45102 * 181.25224 * 10 9 8 12 12 C 1.42904 * 114.00320 * 89.93202 * 11 10 9 13 13 C 1.52997 * 109.47325 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47175 * 180.02562 * 13 12 11 15 15 N 1.46504 * 109.47247 * 180.02562 * 14 13 12 16 16 C 1.36930 * 120.00108 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99900 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99792 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00021 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47181 * 90.00175 * 20 18 16 22 22 H 1.48505 * 109.47037 * 210.00050 * 20 18 16 23 23 H 1.48501 * 109.47087 * 329.99709 * 20 18 16 24 24 C 1.53038 * 109.54139 * 61.23103 * 10 9 8 25 25 C 1.46931 * 120.62952 * 183.79890 * 7 5 4 26 26 C 1.39844 * 118.15551 * 0.02562 * 4 3 2 27 27 C 1.38130 * 118.99810 * 359.97294 * 26 4 3 28 28 N 1.31801 * 119.55087 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47320 * 89.99622 * 1 2 3 30 30 H 1.09005 * 109.47054 * 209.99846 * 1 2 3 31 31 H 1.09005 * 109.46846 * 329.99641 * 1 2 3 32 32 H 1.08005 * 120.49812 * 0.02754 * 3 2 1 33 33 H 1.08996 * 109.58536 * 353.42099 * 8 7 5 34 34 H 1.08999 * 109.58847 * 113.84489 * 8 7 5 35 35 H 1.08993 * 109.56663 * 185.55028 * 9 8 7 36 36 H 1.09006 * 109.35828 * 65.49957 * 9 8 7 37 37 H 1.09009 * 109.45499 * 301.21462 * 10 9 8 38 38 H 1.08998 * 109.47066 * 300.00502 * 12 11 10 39 39 H 1.09001 * 109.46501 * 60.00169 * 12 11 10 40 40 H 1.09007 * 109.47195 * 300.00190 * 13 12 11 41 41 H 1.09001 * 109.46980 * 59.99818 * 13 12 11 42 42 H 1.09004 * 109.47039 * 299.99565 * 14 13 12 43 43 H 1.09001 * 109.47450 * 59.99940 * 14 13 12 44 44 H 0.97006 * 119.99575 * 359.97438 * 15 14 13 45 45 H 0.97001 * 119.99384 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.49560 * 178.68175 * 24 10 9 47 47 H 1.08998 * 109.49533 * 58.59231 * 24 10 9 48 48 H 1.09002 * 109.58856 * 246.15493 * 25 7 5 49 49 H 1.08991 * 109.58640 * 6.44212 * 25 7 5 50 50 H 1.07997 * 120.50189 * 179.97438 * 26 4 3 51 51 H 1.07992 * 119.54755 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1884 0.0005 5 6 4.3600 2.4519 -0.0055 6 8 4.0939 3.3234 -0.8093 7 7 5.3589 2.6347 0.8806 8 6 5.7432 1.5613 1.8073 9 6 5.7149 2.1030 3.2354 10 6 6.5933 3.3532 3.3220 11 8 6.5911 3.8443 4.6639 12 6 7.6244 3.2966 5.4851 13 6 7.5259 3.8895 6.8920 14 6 8.6326 3.3036 7.7710 15 7 8.5380 3.8709 9.1185 16 6 9.4310 3.4923 10.0850 17 1 10.2049 2.7752 9.8542 18 6 9.3416 4.0303 11.3616 19 7 10.1997 3.6660 12.2908 20 14 8.0034 5.2710 11.7606 21 1 6.7952 4.5571 12.2460 22 1 8.4870 6.1988 12.8146 23 1 7.6645 6.0437 10.5386 24 6 6.0443 4.4305 2.3838 25 6 6.0802 3.9132 0.9423 26 6 4.2344 -0.0508 0.0005 27 6 3.4741 -1.2041 0.0005 28 7 2.1570 -1.1466 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6494 2.1377 0.0004 33 1 5.0407 0.7327 1.7182 34 1 6.7498 1.2167 1.5702 35 1 6.0927 1.3446 3.9210 36 1 4.6901 2.3591 3.5044 37 1 7.6127 3.1017 3.0290 38 1 7.5104 2.2139 5.5386 39 1 8.5965 3.5389 5.0555 40 1 7.6396 4.9723 6.8388 41 1 6.5538 3.6470 7.3213 42 1 8.5193 2.2208 7.8243 43 1 9.6046 3.5465 7.3416 44 1 7.8430 4.5152 9.3257 45 1 10.1374 4.0422 13.1827 46 1 6.6567 5.3287 2.4634 47 1 5.0165 4.6647 2.6608 48 1 7.1148 3.7644 0.6331 49 1 5.6014 4.6351 0.2808 50 1 5.3130 -0.1054 0.0005 51 1 3.9652 -2.1658 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276170314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:28 Heat of formation + Delta-G solvation = -33.762254 kcal Electronic energy + Delta-G solvation = -29537.622849 eV Core-core repulsion = 25437.312028 eV Total energy + Delta-G solvation = -4100.310821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.44934 -40.09564 -38.79926 -36.96281 -35.37726 -34.06791 -33.05861 -32.67587 -31.74783 -31.55510 -30.07862 -28.25590 -26.36220 -25.22668 -24.49526 -23.53626 -23.16245 -22.16810 -21.43254 -20.97385 -19.77367 -18.13272 -17.54636 -17.19587 -16.96954 -16.61905 -16.38833 -15.91148 -15.63197 -15.39698 -15.05909 -14.88658 -14.54518 -14.47485 -14.20145 -13.91947 -13.88353 -13.71257 -13.35401 -13.07915 -12.90247 -12.84736 -12.78565 -12.63275 -12.44603 -12.22273 -11.79504 -11.68493 -11.58597 -11.13492 -10.99800 -10.83651 -10.82748 -10.69663 -10.66588 -10.36075 -10.14694 -9.94410 -9.64574 -9.61187 -9.46479 -9.29129 -8.91542 -7.25857 -5.78623 -3.14578 0.29478 0.49717 2.06432 2.34272 3.15901 3.37335 3.39984 3.40903 3.45312 3.68311 3.72374 4.16749 4.20449 4.35039 4.38077 4.45067 4.51039 4.58220 4.65582 4.74536 4.82615 4.89560 4.93411 4.99414 5.02206 5.09471 5.12855 5.13883 5.18797 5.28584 5.32809 5.38253 5.42016 5.44694 5.51132 5.52395 5.53435 5.68443 5.71617 5.83636 5.91654 5.93779 5.96445 6.04936 6.18946 6.67073 6.71496 6.71908 7.12762 7.38663 7.49413 7.97023 8.40365 9.19202 9.91680 10.11506 11.39609 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.001661 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.848500 B =16852.559104 C =17489.414045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.131 3.869 3 C -0.125 4.125 4 C -0.074 4.074 5 C 0.563 3.437 6 O -0.527 6.527 7 N -0.603 5.603 8 C 0.098 3.902 9 C -0.159 4.159 10 C 0.091 3.909 11 O -0.380 6.380 12 C 0.068 3.932 13 C -0.129 4.129 14 C 0.161 3.839 15 N -0.756 5.756 16 C -0.247 4.247 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.886 3.114 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.132 4.132 25 C 0.115 3.885 26 C -0.156 4.156 27 C 0.106 3.894 28 N -0.473 5.473 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.100 0.900 50 H 0.143 0.857 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 -7.442 -31.165 35.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.006 4.006 3 C -0.146 4.146 4 C -0.085 4.085 5 C 0.350 3.650 6 O -0.403 6.403 7 N -0.336 5.336 8 C -0.025 4.025 9 C -0.197 4.197 10 C 0.033 3.967 11 O -0.299 6.299 12 C -0.009 4.009 13 C -0.167 4.167 14 C 0.033 3.967 15 N -0.402 5.402 16 C -0.376 4.376 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.716 3.284 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.170 4.170 25 C -0.007 4.007 26 C -0.176 4.176 27 C -0.050 4.050 28 N -0.184 5.184 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.161 0.839 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.918 -7.706 -31.408 36.045 hybrid contribution -0.014 1.404 0.488 1.487 sum -15.932 -6.302 -30.919 35.349 Atomic orbital electron populations 1.20768 0.88107 1.03962 1.03518 1.21332 0.97438 0.87689 0.94169 1.22014 0.92844 1.00155 0.99539 1.20260 0.94515 0.93721 1.00005 1.18277 0.79436 0.86416 0.80858 1.90811 1.67592 1.43766 1.38138 1.48070 1.34459 1.15540 1.35513 1.22027 1.01772 0.90079 0.88614 1.22388 1.02461 0.98851 0.96048 1.21987 0.98260 0.92990 0.83501 1.87943 1.53640 1.67493 1.20868 1.22519 0.89784 0.97253 0.91360 1.21717 1.00868 1.01397 0.92680 1.20487 0.94992 0.96059 0.85133 1.42684 1.37434 1.52344 1.07730 1.19060 1.07998 1.21149 0.89438 0.89195 1.24686 0.98610 0.99944 0.95939 1.69709 1.38042 1.47111 1.03288 0.86525 0.82336 0.81861 0.77696 1.21010 1.21655 1.20279 1.21997 1.03376 0.98726 0.92922 1.21678 0.96945 0.84945 0.97129 1.22349 1.01837 0.92274 1.01187 1.22773 0.89148 0.98427 0.94692 1.67434 1.10287 1.29410 1.11222 0.89991 0.90020 0.90336 0.83964 0.88568 0.90449 0.89823 0.90489 0.91853 0.93226 0.93123 0.91223 0.91241 0.95467 0.95500 0.80561 0.93028 0.89443 0.90512 0.90721 0.88165 0.83898 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.17 36.00 0.37 -0.16 16 2 C 0.13 0.99 6.78 -82.63 -0.56 0.43 16 3 C -0.12 -0.98 9.48 -39.03 -0.37 -1.35 16 4 C -0.07 -0.59 5.05 -104.64 -0.53 -1.12 16 5 C 0.56 5.37 7.31 -12.19 -0.09 5.28 16 6 O -0.53 -6.78 16.48 5.36 0.09 -6.69 16 7 N -0.60 -4.60 2.98 -174.03 -0.52 -5.12 16 8 C 0.10 0.56 5.37 -3.93 -0.02 0.54 16 9 C -0.16 -1.18 5.68 -26.83 -0.15 -1.33 16 10 C 0.09 0.79 2.57 -26.69 -0.07 0.72 16 11 O -0.38 -4.59 9.99 -35.23 -0.35 -4.94 16 12 C 0.07 0.82 5.75 37.16 0.21 1.03 16 13 C -0.13 -1.98 5.70 -26.73 -0.15 -2.13 16 14 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 15 N -0.76 -18.28 5.41 -59.91 -0.32 -18.60 16 16 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 17 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.45 13.97 55.49 0.78 -28.68 16 20 Si 0.89 22.29 27.73 -169.99 -4.71 17.58 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 24 C -0.13 -1.05 5.73 -26.61 -0.15 -1.20 16 25 C 0.11 0.83 6.43 -3.71 -0.02 0.81 16 26 C -0.16 -0.93 7.49 -39.02 -0.29 -1.23 16 27 C 0.11 0.66 11.17 -17.59 -0.20 0.46 16 28 N -0.47 -3.89 10.25 -9.53 -0.10 -3.99 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.10 0.49 4.52 -51.93 -0.23 0.26 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.48 7.79 -51.92 -0.40 0.08 16 38 H 0.05 0.55 7.84 -51.93 -0.41 0.14 16 39 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.36 8.54 5.53 -40.82 -0.23 8.32 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.82 7.02 -51.93 -0.36 0.46 16 50 H 0.14 0.53 7.05 -52.49 -0.37 0.16 16 51 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 410.23 15.07 6.18 6.18 Total: -1.00 -35.75 410.23 -9.61 -45.36 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.34 Total: 2.31 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.31 Total: -3.41 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.16 Total: -56.39 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.26 Total: -11.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.75 -9.61 -45.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276170314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.597 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds