Wall clock time and date at job start Wed Apr 1 2020 04:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38166 * 119.55730 * 2 1 4 4 C 1.39792 * 119.00609 * 179.97438 * 3 2 1 5 5 C 1.48152 * 120.92479 * 179.72753 * 4 3 2 6 6 O 1.21511 * 120.00057 * 310.56348 * 5 4 3 7 7 N 1.34772 * 119.99900 * 130.56844 * 5 4 3 8 8 C 1.46926 * 120.63145 * 3.52095 * 7 5 4 9 9 C 1.52763 * 109.00952 * 233.58142 * 8 7 5 10 10 C 1.53038 * 109.38537 * 305.59473 * 9 8 7 11 11 O 1.42897 * 109.45102 * 181.25224 * 10 9 8 12 12 C 1.42904 * 114.00320 * 89.93202 * 11 10 9 13 13 C 1.52997 * 109.47325 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47175 * 180.02562 * 13 12 11 15 15 N 1.46504 * 109.47247 * 180.02562 * 14 13 12 16 16 C 1.36930 * 120.00108 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.38818 * 119.99900 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99792 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00021 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47181 * 90.00175 * 20 18 16 22 22 H 1.48505 * 109.47037 * 210.00050 * 20 18 16 23 23 H 1.48501 * 109.47087 * 329.99709 * 20 18 16 24 24 C 1.53038 * 109.54139 * 61.23103 * 10 9 8 25 25 C 1.46931 * 120.62952 * 183.79890 * 7 5 4 26 26 C 1.39844 * 118.15551 * 0.02562 * 4 3 2 27 27 C 1.38130 * 118.99810 * 359.97294 * 26 4 3 28 28 N 1.31801 * 119.55087 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47320 * 89.99622 * 1 2 3 30 30 H 1.09005 * 109.47054 * 209.99846 * 1 2 3 31 31 H 1.09005 * 109.46846 * 329.99641 * 1 2 3 32 32 H 1.08005 * 120.49812 * 0.02754 * 3 2 1 33 33 H 1.08996 * 109.58536 * 353.42099 * 8 7 5 34 34 H 1.08999 * 109.58847 * 113.84489 * 8 7 5 35 35 H 1.08993 * 109.56663 * 185.55028 * 9 8 7 36 36 H 1.09006 * 109.35828 * 65.49957 * 9 8 7 37 37 H 1.09009 * 109.45499 * 301.21462 * 10 9 8 38 38 H 1.08998 * 109.47066 * 300.00502 * 12 11 10 39 39 H 1.09001 * 109.46501 * 60.00169 * 12 11 10 40 40 H 1.09007 * 109.47195 * 300.00190 * 13 12 11 41 41 H 1.09001 * 109.46980 * 59.99818 * 13 12 11 42 42 H 1.09004 * 109.47039 * 299.99565 * 14 13 12 43 43 H 1.09001 * 109.47450 * 59.99940 * 14 13 12 44 44 H 0.97006 * 119.99575 * 359.97438 * 15 14 13 45 45 H 0.97001 * 119.99384 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.49560 * 178.68175 * 24 10 9 47 47 H 1.08998 * 109.49533 * 58.59231 * 24 10 9 48 48 H 1.09002 * 109.58856 * 246.15493 * 25 7 5 49 49 H 1.08991 * 109.58640 * 6.44212 * 25 7 5 50 50 H 1.07997 * 120.50189 * 179.97438 * 26 4 3 51 51 H 1.07992 * 119.54755 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1884 0.0005 5 6 4.3600 2.4519 -0.0055 6 8 4.0939 3.3234 -0.8093 7 7 5.3589 2.6347 0.8806 8 6 5.7432 1.5613 1.8073 9 6 5.7149 2.1030 3.2354 10 6 6.5933 3.3532 3.3220 11 8 6.5911 3.8443 4.6639 12 6 7.6244 3.2966 5.4851 13 6 7.5259 3.8895 6.8920 14 6 8.6326 3.3036 7.7710 15 7 8.5380 3.8709 9.1185 16 6 9.4310 3.4923 10.0850 17 1 10.2049 2.7752 9.8542 18 6 9.3416 4.0303 11.3616 19 7 10.1997 3.6660 12.2908 20 14 8.0034 5.2710 11.7606 21 1 6.7952 4.5571 12.2460 22 1 8.4870 6.1988 12.8146 23 1 7.6645 6.0437 10.5386 24 6 6.0443 4.4305 2.3838 25 6 6.0802 3.9132 0.9423 26 6 4.2344 -0.0508 0.0005 27 6 3.4741 -1.2041 0.0005 28 7 2.1570 -1.1466 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6494 2.1377 0.0004 33 1 5.0407 0.7327 1.7182 34 1 6.7498 1.2167 1.5702 35 1 6.0927 1.3446 3.9210 36 1 4.6901 2.3591 3.5044 37 1 7.6127 3.1017 3.0290 38 1 7.5104 2.2139 5.5386 39 1 8.5965 3.5389 5.0555 40 1 7.6396 4.9723 6.8388 41 1 6.5538 3.6470 7.3213 42 1 8.5193 2.2208 7.8243 43 1 9.6046 3.5465 7.3416 44 1 7.8430 4.5152 9.3257 45 1 10.1374 4.0422 13.1827 46 1 6.6567 5.3287 2.4634 47 1 5.0165 4.6647 2.6608 48 1 7.1148 3.7644 0.6331 49 1 5.6014 4.6351 0.2808 50 1 5.3130 -0.1054 0.0005 51 1 3.9652 -2.1658 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276170314.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:27 Heat of formation + Delta-G solvation = -57.507928 kcal Electronic energy + Delta-G solvation = -29538.652538 eV Core-core repulsion = 25437.312028 eV Total energy + Delta-G solvation = -4101.340511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.03518 -40.68125 -39.59262 -37.85979 -36.97081 -34.71011 -34.20818 -33.53742 -32.90673 -32.12169 -31.64026 -28.69045 -27.35887 -26.43051 -25.08093 -24.29786 -23.80977 -23.59654 -22.58570 -21.89038 -20.39162 -19.63111 -18.71138 -17.85757 -17.67042 -17.34754 -16.91341 -16.86784 -16.60872 -16.25360 -15.89184 -15.76425 -15.56330 -15.43940 -15.37298 -14.89229 -14.77332 -14.58218 -14.40405 -14.13308 -13.89712 -13.74830 -13.46554 -13.24906 -13.13239 -13.00855 -12.96014 -12.70669 -12.52945 -12.48153 -12.32754 -12.07632 -11.99498 -11.82737 -11.82001 -11.54254 -11.49356 -10.99295 -10.94516 -10.53753 -10.39222 -9.95948 -9.91423 -9.32701 -8.04789 -5.38949 -0.25768 0.00961 1.37831 1.38832 1.40662 1.48206 1.75088 2.47104 2.54993 2.66334 3.11655 3.26637 3.31132 3.62379 3.67243 3.73488 3.79189 3.87132 3.92252 3.99364 4.05982 4.08042 4.23204 4.23885 4.30855 4.35875 4.41376 4.47674 4.52605 4.58193 4.67670 4.69613 4.71057 4.74292 4.74977 4.77322 4.80934 4.89067 4.91455 4.98541 5.08263 5.14902 5.17905 5.29247 5.30204 5.36211 5.59013 5.73254 6.09832 6.19092 6.31411 6.82226 6.89398 7.05531 7.81785 8.00199 9.16371 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.001661 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.848500 B =16852.559104 C =17489.414045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.121 3.879 3 C -0.139 4.139 4 C -0.089 4.089 5 C 0.561 3.439 6 O -0.570 6.570 7 N -0.598 5.598 8 C 0.099 3.901 9 C -0.155 4.155 10 C 0.086 3.914 11 O -0.400 6.400 12 C 0.075 3.925 13 C -0.118 4.118 14 C 0.157 3.843 15 N -0.762 5.762 16 C -0.240 4.240 17 H 0.059 0.941 18 C -0.064 4.064 19 N -0.982 5.982 20 Si 0.956 3.044 21 H -0.277 1.277 22 H -0.294 1.294 23 H -0.253 1.253 24 C -0.126 4.126 25 C 0.117 3.883 26 C -0.147 4.147 27 C 0.104 3.896 28 N -0.496 5.496 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.030 0.970 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.098 0.902 49 H 0.086 0.914 50 H 0.170 0.830 51 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 -8.001 -32.517 37.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.016 4.016 3 C -0.160 4.160 4 C -0.100 4.100 5 C 0.349 3.651 6 O -0.450 6.450 7 N -0.330 5.330 8 C -0.023 4.023 9 C -0.193 4.193 10 C 0.028 3.972 11 O -0.320 6.320 12 C -0.002 4.002 13 C -0.156 4.156 14 C 0.031 3.969 15 N -0.408 5.408 16 C -0.370 4.370 17 H 0.077 0.923 18 C -0.255 4.255 19 N -0.632 5.632 20 Si 0.783 3.217 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.178 1.178 24 C -0.164 4.164 25 C -0.005 4.005 26 C -0.167 4.167 27 C -0.052 4.052 28 N -0.207 5.207 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.159 0.841 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.199 0.801 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.076 0.924 48 H 0.116 0.884 49 H 0.104 0.896 50 H 0.187 0.813 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.310 -8.282 -32.796 37.553 hybrid contribution 0.173 1.501 0.859 1.738 sum -16.137 -6.781 -31.938 36.420 Atomic orbital electron populations 1.20827 0.86772 1.04501 1.04157 1.21641 0.98508 0.87429 0.94008 1.22103 0.93161 1.00394 1.00301 1.20300 0.94604 0.93916 1.01149 1.18532 0.79499 0.86451 0.80582 1.90784 1.68852 1.45288 1.40064 1.48168 1.33689 1.16079 1.35039 1.22195 1.03534 0.89469 0.87055 1.22341 1.01120 0.98581 0.97298 1.22197 0.99622 0.93414 0.81922 1.87904 1.53616 1.68109 1.22390 1.22365 0.90512 0.97707 0.89619 1.21534 0.98968 1.00996 0.94109 1.20659 0.96650 0.96219 0.83397 1.42743 1.36590 1.52602 1.08859 1.19068 1.07613 1.19798 0.90566 0.92270 1.25538 1.01476 1.02651 0.95881 1.69886 1.40487 1.49070 1.03768 0.85391 0.79070 0.79195 0.78035 1.20308 1.22037 1.17787 1.21933 1.02295 0.98988 0.93222 1.21692 0.97906 0.84640 0.96275 1.22596 1.03086 0.91175 0.99864 1.23309 0.88670 0.99758 0.93510 1.67490 1.11475 1.29722 1.11979 0.89244 0.90010 0.89237 0.84137 0.87759 0.87605 0.88915 0.92372 0.89900 0.91802 0.91857 0.91693 0.91608 0.95066 0.95210 0.80116 0.93249 0.89012 0.92395 0.88435 0.89562 0.81285 0.78957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.17 71.24 0.72 -0.27 16 2 C 0.12 1.77 6.78 42.55 0.29 2.06 16 3 C -0.14 -2.17 9.48 22.63 0.21 -1.96 16 4 C -0.09 -1.35 5.05 -19.88 -0.10 -1.45 16 5 C 0.56 10.42 7.31 86.88 0.63 11.05 16 6 O -0.57 -15.01 16.48 -3.75 -0.06 -15.07 16 7 N -0.60 -8.14 2.98 -822.82 -2.45 -10.59 16 8 C 0.10 0.84 5.37 86.22 0.46 1.31 16 9 C -0.15 -1.92 5.68 30.53 0.17 -1.74 16 10 C 0.09 1.27 2.57 30.62 0.08 1.35 16 11 O -0.40 -8.72 9.99 -148.98 -1.49 -10.21 16 12 C 0.07 1.60 5.75 71.98 0.41 2.01 16 13 C -0.12 -3.36 5.70 30.59 0.17 -3.19 16 14 C 0.16 5.71 6.26 86.38 0.54 6.25 16 15 N -0.76 -35.87 5.41 -343.44 -1.86 -37.73 16 16 C -0.24 -13.79 10.47 84.04 0.88 -12.90 16 17 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 18 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 19 N -0.98 -63.01 13.97 21.65 0.30 -62.71 16 20 Si 0.96 45.68 27.73 68.60 1.90 47.59 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 24 C -0.13 -1.83 5.73 30.67 0.18 -1.65 16 25 C 0.12 1.51 6.43 86.36 0.55 2.07 16 26 C -0.15 -1.43 7.49 22.63 0.17 -1.26 16 27 C 0.10 1.07 11.17 84.67 0.95 2.01 16 28 N -0.50 -7.58 10.25 -184.05 -1.89 -9.46 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.09 0.60 8.08 -2.38 -0.02 0.58 16 32 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.10 0.76 4.52 -2.39 -0.01 0.75 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 1.01 7.84 -2.39 -0.02 0.99 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 0.93 7.79 -2.38 -0.02 0.91 16 38 H 0.06 1.19 7.84 -2.39 -0.02 1.17 16 39 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.37 16.49 5.53 -92.70 -0.51 15.98 16 45 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.09 1.40 7.02 -2.39 -0.02 1.39 16 50 H 0.17 0.65 7.05 -2.91 -0.02 0.63 16 51 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 Total: -1.00 -78.64 410.23 1.61 -77.03 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.35 Total: 20.81 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 6.80 Total: 0.36 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -5.89 Total: -120.50 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -1.55 Total: -25.28 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.59 kcal Total: -78.64 1.61 -77.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276170314.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.519 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds