Wall clock time and date at job start Wed Apr 1 2020 04:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99929 * 2 1 4 4 C 1.53008 * 109.47091 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47141 * 65.00092 * 4 3 2 6 6 C 1.36944 * 120.00025 * 270.00205 * 5 4 3 7 7 H 1.08000 * 119.99790 * 146.21638 * 6 5 4 8 8 C 1.38813 * 119.99645 * 326.21479 * 6 5 4 9 9 N 1.31614 * 120.00434 * 336.17936 * 8 6 5 10 10 Si 1.86804 * 119.99755 * 156.18537 * 8 6 5 11 11 H 1.48501 * 109.47011 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46864 * 119.99680 * 10 8 6 13 13 H 1.48489 * 109.46978 * 239.99838 * 10 8 6 14 14 C 1.46496 * 120.00246 * 90.00081 * 5 4 3 15 15 C 1.53042 * 109.46131 * 114.47008 * 14 5 4 16 16 C 1.53197 * 109.31350 * 181.38746 * 15 14 5 17 17 N 1.46929 * 108.77334 * 305.37031 * 16 15 14 18 18 C 1.34786 * 120.62380 * 233.58415 * 17 16 15 19 19 O 1.21508 * 120.00207 * 6.14116 * 18 17 16 20 20 C 1.48152 * 119.99431 * 186.13517 * 18 17 16 21 21 C 1.39833 * 120.92430 * 33.77009 * 20 18 17 22 22 C 1.38127 * 119.00407 * 180.24916 * 21 20 18 23 23 N 1.31819 * 120.89511 * 0.02562 * 22 21 20 24 24 C 1.31797 * 122.05402 * 0.02562 * 23 22 21 25 25 C 1.50698 * 119.55409 * 179.97438 * 24 23 22 26 26 C 1.38171 * 120.89135 * 359.97295 * 24 23 22 27 27 C 1.46920 * 118.74383 * 53.85582 * 17 16 15 28 28 C 1.53039 * 109.46409 * 234.54282 * 14 5 4 29 29 H 1.09007 * 109.46598 * 299.99962 * 1 2 3 30 30 H 1.09003 * 109.47158 * 59.99264 * 1 2 3 31 31 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47289 * 60.00327 * 3 2 1 33 33 H 1.08997 * 109.47675 * 300.00178 * 3 2 1 34 34 H 1.09004 * 109.46495 * 305.00045 * 4 3 2 35 35 H 1.08995 * 109.47027 * 185.00422 * 4 3 2 36 36 H 0.96997 * 120.00646 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.45552 * 354.49927 * 14 5 4 38 38 H 1.08995 * 109.49318 * 61.43956 * 15 14 5 39 39 H 1.08996 * 109.49928 * 301.33815 * 15 14 5 40 40 H 1.08998 * 109.58727 * 185.57939 * 16 15 14 41 41 H 1.09000 * 109.70162 * 65.22015 * 16 15 14 42 42 H 1.08006 * 120.49963 * 0.24933 * 21 20 18 43 43 H 1.07999 * 119.55186 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47364 * 269.97217 * 25 24 23 45 45 H 1.08992 * 109.47234 * 29.98098 * 25 24 23 46 46 H 1.09007 * 109.46811 * 149.98065 * 25 24 23 47 47 H 1.07997 * 120.49907 * 180.02562 * 26 24 23 48 48 H 1.09005 * 109.58378 * 65.92671 * 27 17 16 49 49 H 1.09002 * 109.58736 * 186.35306 * 27 17 16 50 50 H 1.09003 * 109.49812 * 298.56358 * 28 14 5 51 51 H 1.09003 * 109.49706 * 58.65502 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8799 -1.3019 -2.2666 8 6 4.4983 -1.5280 -0.2272 9 7 5.1959 -0.9476 0.7260 10 14 4.0485 -3.3356 -0.0869 11 1 3.2665 -3.7453 -1.2811 12 1 5.2880 -4.1491 -0.0034 13 1 3.2328 -3.5493 1.1354 14 6 4.2864 1.4007 -2.4147 15 6 5.7779 1.2891 -2.7390 16 6 6.1057 2.1914 -3.9329 17 7 5.2174 1.8399 -5.0492 18 6 5.7243 1.5353 -6.2604 19 8 6.9265 1.4403 -6.4095 20 6 4.8157 1.3160 -7.4098 21 6 3.6215 2.0337 -7.5289 22 6 2.8013 1.7939 -8.6141 23 7 3.1313 0.9033 -9.5282 24 6 4.2465 0.2049 -9.4537 25 6 4.5678 -0.7994 -10.5304 26 6 5.1250 0.3810 -8.4019 27 6 3.7659 1.8328 -4.8219 28 6 3.4646 0.9292 -3.6166 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1765 0.0890 36 1 5.4768 -1.4584 1.5012 37 1 4.0400 2.4387 -2.1914 38 1 6.0199 0.2557 -2.9869 39 1 6.3627 1.6030 -1.8745 40 1 7.1435 2.0412 -4.2304 41 1 5.9517 3.2349 -3.6581 42 1 3.3446 2.7646 -6.7835 43 1 1.8771 2.3435 -8.7150 44 1 4.1540 -1.7701 -10.2571 45 1 4.1329 -0.4717 -11.4745 46 1 5.6493 -0.8830 -10.6381 47 1 6.0372 -0.1945 -8.3474 48 1 3.4233 2.8470 -4.6163 49 1 3.2594 1.4459 -5.7061 50 1 3.7285 -0.1009 -3.8562 51 1 2.4029 0.9868 -3.3765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277413049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:16 Heat of formation + Delta-G solvation = -6.866516 kcal Electronic energy + Delta-G solvation = -31762.478344 eV Core-core repulsion = 27663.333809 eV Total energy + Delta-G solvation = -4099.144534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.97035 -39.43774 -37.68676 -36.87966 -35.08632 -33.58889 -32.62364 -31.90770 -30.60377 -30.56363 -28.19442 -27.90738 -25.69864 -25.51967 -24.20959 -23.53609 -22.66608 -22.42999 -20.81011 -20.05130 -19.10792 -17.55372 -16.67444 -16.35808 -16.18875 -15.82141 -15.63413 -15.12863 -15.07790 -14.86481 -14.79026 -14.47903 -14.05646 -13.95838 -13.67032 -13.55554 -13.48984 -13.17400 -13.06505 -12.69710 -12.51381 -12.31648 -12.10894 -11.82219 -11.76189 -11.52339 -11.38967 -10.93978 -10.84810 -10.79259 -10.62746 -10.44935 -10.27784 -10.15576 -9.95546 -9.86003 -9.82220 -9.50790 -9.44834 -9.09970 -8.84936 -8.49594 -8.36883 -6.57015 -5.70702 -3.21551 0.64116 0.86305 2.73282 3.00608 3.45066 3.53216 3.55889 3.59597 4.04701 4.25613 4.52431 4.55462 4.67337 4.73051 4.82476 5.05567 5.13806 5.20049 5.22904 5.37219 5.39184 5.40717 5.48791 5.51969 5.60678 5.68304 5.71714 5.75415 5.79528 5.81445 5.87055 5.91935 6.00894 6.04423 6.07463 6.12288 6.20475 6.33511 6.39519 6.43878 6.55414 6.64372 6.71196 6.76712 7.05228 7.17903 7.44417 7.67473 7.71903 7.90482 8.05874 8.12629 8.57836 9.24268 9.90485 10.42210 11.31285 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.003032 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.331273 B = 9232.566315 C = 9362.953628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.048 3.952 4 C 0.139 3.861 5 N -0.572 5.572 6 C -0.234 4.234 7 H 0.058 0.942 8 C 0.018 3.982 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.136 4.136 16 C 0.112 3.888 17 N -0.593 5.593 18 C 0.556 3.444 19 O -0.537 6.537 20 C -0.073 4.073 21 C -0.154 4.154 22 C 0.099 3.901 23 N -0.475 5.475 24 C 0.124 3.876 25 C -0.104 4.104 26 C -0.120 4.120 27 C 0.092 3.908 28 C -0.138 4.138 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.109 0.891 35 H 0.038 0.962 36 H 0.251 0.749 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.148 0.852 43 H 0.162 0.838 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.144 0.856 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.071 0.929 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 7.957 -13.816 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.031 4.031 4 C 0.012 3.988 5 N -0.290 5.290 6 C -0.363 4.363 7 H 0.075 0.925 8 C -0.181 4.181 9 N -0.535 5.535 10 Si 0.724 3.276 11 H -0.204 1.204 12 H -0.223 1.223 13 H -0.216 1.216 14 C 0.069 3.931 15 C -0.176 4.176 16 C -0.010 4.010 17 N -0.325 5.325 18 C 0.343 3.657 19 O -0.414 6.414 20 C -0.084 4.084 21 C -0.175 4.175 22 C -0.058 4.058 23 N -0.185 5.185 24 C -0.014 4.014 25 C -0.161 4.161 26 C -0.140 4.140 27 C -0.031 4.031 28 C -0.178 4.178 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.165 0.835 43 H 0.179 0.821 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.162 0.838 48 H 0.086 0.914 49 H 0.106 0.894 50 H 0.090 0.910 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.591 7.532 -14.393 17.180 hybrid contribution -0.173 -0.505 1.093 1.217 sum -5.765 7.026 -13.300 16.109 Atomic orbital electron populations 1.22630 0.84385 1.01431 0.98332 1.88232 1.16402 1.27649 1.94787 1.23434 0.98959 0.84088 0.96633 1.21108 0.87473 0.96668 0.93504 1.43790 1.75054 1.02745 1.07449 1.18781 1.38427 0.81417 0.97689 0.92463 1.24878 0.97071 0.97365 0.98797 1.69958 1.36322 1.36015 1.11195 0.86378 0.77602 0.85847 0.77732 1.20435 1.22346 1.21595 1.20324 0.91405 0.93318 0.88073 1.22368 0.99514 1.00198 0.95504 1.21828 0.94596 0.98525 0.86089 1.48037 1.08059 1.66706 1.09672 1.18216 0.87595 0.77258 0.82617 1.90765 1.14955 1.51611 1.84096 1.20386 0.94986 0.97314 0.95681 1.22572 0.94000 1.01091 0.99794 1.22715 0.99237 0.94489 0.89333 1.67375 1.17308 1.05844 1.27985 1.21280 0.89722 0.95492 0.94903 1.20732 1.02369 0.96678 0.96334 1.22077 1.00840 0.97769 0.93336 1.22478 0.79708 1.00557 1.00347 1.22410 1.00898 0.99927 0.94593 0.95581 0.95369 0.90803 0.95892 0.95664 0.87394 0.94364 0.93890 0.93477 0.90981 0.90890 0.89569 0.91851 0.83467 0.82092 0.90117 0.90311 0.90459 0.83845 0.91373 0.89352 0.91038 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.50 10.18 -35.23 -0.36 -7.86 16 3 C 0.05 0.92 6.28 37.16 0.23 1.16 16 4 C 0.14 3.04 5.68 -4.04 -0.02 3.02 16 5 N -0.57 -12.89 2.37 -165.62 -0.39 -13.29 16 6 C -0.23 -6.03 7.93 -15.06 -0.12 -6.15 16 7 H 0.06 1.53 6.67 -52.49 -0.35 1.18 16 8 C 0.02 0.49 4.93 -17.43 -0.09 0.40 16 9 N -0.89 -24.98 11.36 55.49 0.63 -24.35 16 10 Si 0.89 22.14 29.62 -169.99 -5.03 17.10 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.18 3.25 2.58 -67.89 -0.18 3.07 16 15 C -0.14 -2.50 5.39 -26.61 -0.14 -2.64 16 16 C 0.11 1.71 6.44 -3.71 -0.02 1.69 16 17 N -0.59 -8.69 2.97 -173.50 -0.51 -9.21 16 18 C 0.56 8.69 7.44 -12.18 -0.09 8.60 16 19 O -0.54 -10.05 16.30 5.36 0.09 -9.96 16 20 C -0.07 -0.95 5.35 -104.65 -0.56 -1.51 16 21 C -0.15 -1.62 7.47 -39.03 -0.29 -1.91 16 22 C 0.10 0.98 11.17 -17.60 -0.20 0.79 16 23 N -0.47 -5.54 10.25 -9.53 -0.10 -5.64 16 24 C 0.12 1.39 6.78 -82.63 -0.56 0.83 16 25 C -0.10 -0.84 10.17 36.00 0.37 -0.48 16 26 C -0.12 -1.48 9.35 -39.02 -0.36 -1.85 16 27 C 0.09 1.16 4.83 -3.49 -0.02 1.15 16 28 C -0.14 -2.27 5.21 -26.39 -0.14 -2.40 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 2.79 5.34 -51.93 -0.28 2.51 16 35 H 0.04 0.76 7.97 -51.93 -0.41 0.35 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 38 H 0.07 1.56 7.83 -51.93 -0.41 1.15 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.09 1.41 7.00 -51.93 -0.36 1.04 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.15 1.25 6.00 -52.48 -0.31 0.94 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 47 H 0.14 1.71 8.04 -52.49 -0.42 1.29 16 48 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 49 H 0.09 1.01 4.38 -51.93 -0.23 0.78 16 50 H 0.07 1.37 6.87 -51.93 -0.36 1.01 16 51 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 404.22 15.07 6.09 6.09 Total: -1.00 -31.88 404.22 -8.83 -40.70 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.16 Total: 1.04 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.08 Total: 5.36 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.37 Total: -52.48 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.27 Total: -17.82 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.88 -8.83 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277413049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.838 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds