Wall clock time and date at job start Wed Apr 1 2020 04:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99929 * 2 1 4 4 C 1.53008 * 109.47091 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47141 * 65.00092 * 4 3 2 6 6 C 1.36944 * 120.00025 * 270.00205 * 5 4 3 7 7 H 1.08000 * 119.99790 * 146.21638 * 6 5 4 8 8 C 1.38813 * 119.99645 * 326.21479 * 6 5 4 9 9 N 1.31614 * 120.00434 * 336.17936 * 8 6 5 10 10 Si 1.86804 * 119.99755 * 156.18537 * 8 6 5 11 11 H 1.48501 * 109.47011 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46864 * 119.99680 * 10 8 6 13 13 H 1.48489 * 109.46978 * 239.99838 * 10 8 6 14 14 C 1.46496 * 120.00246 * 90.00081 * 5 4 3 15 15 C 1.53042 * 109.46131 * 114.47008 * 14 5 4 16 16 C 1.53197 * 109.31350 * 181.38746 * 15 14 5 17 17 N 1.46929 * 108.77334 * 305.37031 * 16 15 14 18 18 C 1.34786 * 120.62380 * 233.58415 * 17 16 15 19 19 O 1.21508 * 120.00207 * 6.14116 * 18 17 16 20 20 C 1.48152 * 119.99431 * 186.13517 * 18 17 16 21 21 C 1.39833 * 120.92430 * 33.77009 * 20 18 17 22 22 C 1.38127 * 119.00407 * 180.24916 * 21 20 18 23 23 N 1.31819 * 120.89511 * 0.02562 * 22 21 20 24 24 C 1.31797 * 122.05402 * 0.02562 * 23 22 21 25 25 C 1.50698 * 119.55409 * 179.97438 * 24 23 22 26 26 C 1.38171 * 120.89135 * 359.97295 * 24 23 22 27 27 C 1.46920 * 118.74383 * 53.85582 * 17 16 15 28 28 C 1.53039 * 109.46409 * 234.54282 * 14 5 4 29 29 H 1.09007 * 109.46598 * 299.99962 * 1 2 3 30 30 H 1.09003 * 109.47158 * 59.99264 * 1 2 3 31 31 H 1.08995 * 109.47148 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47289 * 60.00327 * 3 2 1 33 33 H 1.08997 * 109.47675 * 300.00178 * 3 2 1 34 34 H 1.09004 * 109.46495 * 305.00045 * 4 3 2 35 35 H 1.08995 * 109.47027 * 185.00422 * 4 3 2 36 36 H 0.96997 * 120.00646 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.45552 * 354.49927 * 14 5 4 38 38 H 1.08995 * 109.49318 * 61.43956 * 15 14 5 39 39 H 1.08996 * 109.49928 * 301.33815 * 15 14 5 40 40 H 1.08998 * 109.58727 * 185.57939 * 16 15 14 41 41 H 1.09000 * 109.70162 * 65.22015 * 16 15 14 42 42 H 1.08006 * 120.49963 * 0.24933 * 21 20 18 43 43 H 1.07999 * 119.55186 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47364 * 269.97217 * 25 24 23 45 45 H 1.08992 * 109.47234 * 29.98098 * 25 24 23 46 46 H 1.09007 * 109.46811 * 149.98065 * 25 24 23 47 47 H 1.07997 * 120.49907 * 180.02562 * 26 24 23 48 48 H 1.09005 * 109.58378 * 65.92671 * 27 17 16 49 49 H 1.09002 * 109.58736 * 186.35306 * 27 17 16 50 50 H 1.09003 * 109.49812 * 298.56358 * 28 14 5 51 51 H 1.09003 * 109.49706 * 58.65502 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7970 -1.3369 7 1 3.8799 -1.3019 -2.2666 8 6 4.4983 -1.5280 -0.2272 9 7 5.1959 -0.9476 0.7260 10 14 4.0485 -3.3356 -0.0869 11 1 3.2665 -3.7453 -1.2811 12 1 5.2880 -4.1491 -0.0034 13 1 3.2328 -3.5493 1.1354 14 6 4.2864 1.4007 -2.4147 15 6 5.7779 1.2891 -2.7390 16 6 6.1057 2.1914 -3.9329 17 7 5.2174 1.8399 -5.0492 18 6 5.7243 1.5353 -6.2604 19 8 6.9265 1.4403 -6.4095 20 6 4.8157 1.3160 -7.4098 21 6 3.6215 2.0337 -7.5289 22 6 2.8013 1.7939 -8.6141 23 7 3.1313 0.9033 -9.5282 24 6 4.2465 0.2049 -9.4537 25 6 4.5678 -0.7994 -10.5304 26 6 5.1250 0.3810 -8.4019 27 6 3.7659 1.8328 -4.8219 28 6 3.4646 0.9292 -3.6166 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1765 0.0890 36 1 5.4768 -1.4584 1.5012 37 1 4.0400 2.4387 -2.1914 38 1 6.0199 0.2557 -2.9869 39 1 6.3627 1.6030 -1.8745 40 1 7.1435 2.0412 -4.2304 41 1 5.9517 3.2349 -3.6581 42 1 3.3446 2.7646 -6.7835 43 1 1.8771 2.3435 -8.7150 44 1 4.1540 -1.7701 -10.2571 45 1 4.1329 -0.4717 -11.4745 46 1 5.6493 -0.8830 -10.6381 47 1 6.0372 -0.1945 -8.3474 48 1 3.4233 2.8470 -4.6163 49 1 3.2594 1.4459 -5.7061 50 1 3.7285 -0.1009 -3.8562 51 1 2.4029 0.9868 -3.3765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277413049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:15 Heat of formation + Delta-G solvation = -26.615741 kcal Electronic energy + Delta-G solvation = -31763.334735 eV Core-core repulsion = 27663.333809 eV Total energy + Delta-G solvation = -4100.000925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.97754 -40.51459 -39.16633 -38.29863 -36.63207 -34.62619 -33.60745 -33.41090 -32.18568 -31.84248 -29.78436 -28.65870 -27.16065 -26.86027 -25.57596 -24.81346 -23.78101 -23.58370 -22.28350 -21.53768 -20.37704 -18.70531 -18.07904 -17.61923 -17.37988 -17.04252 -16.82338 -16.64186 -16.49556 -16.24710 -15.79389 -15.65248 -15.52152 -15.36102 -15.17598 -14.88302 -14.53794 -14.36589 -14.34247 -13.74969 -13.49372 -13.39679 -13.28825 -13.15819 -13.08800 -12.88688 -12.74871 -12.67597 -12.49449 -12.36262 -12.20913 -12.07464 -11.79979 -11.57634 -11.46695 -11.40916 -11.10081 -10.89428 -10.47364 -10.37154 -10.26812 -9.90262 -9.72511 -8.47459 -7.71586 -5.23497 -0.28990 0.04854 1.42835 1.47809 1.54089 1.58231 1.89170 2.58095 2.73152 3.20895 3.26128 3.34237 3.40127 3.61216 3.75196 3.86138 3.95752 4.01569 4.12868 4.20422 4.31074 4.41232 4.45062 4.48003 4.54262 4.57057 4.62723 4.67135 4.69771 4.72094 4.76177 4.77136 4.81398 4.86115 4.89809 4.93760 4.95381 5.01292 5.03425 5.09709 5.16324 5.22015 5.42232 5.60165 5.61520 5.63973 5.78411 5.91750 6.27065 6.51723 6.72860 6.90945 6.93580 7.30119 8.02159 8.47183 9.25123 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.003032 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.331273 B = 9232.566315 C = 9362.953628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.057 3.943 4 C 0.135 3.865 5 N -0.584 5.584 6 C -0.215 4.215 7 H 0.043 0.957 8 C -0.029 4.029 9 N -0.917 5.917 10 Si 0.933 3.067 11 H -0.277 1.277 12 H -0.302 1.302 13 H -0.295 1.295 14 C 0.172 3.828 15 C -0.124 4.124 16 C 0.122 3.878 17 N -0.593 5.593 18 C 0.553 3.447 19 O -0.578 6.578 20 C -0.092 4.092 21 C -0.147 4.147 22 C 0.104 3.896 23 N -0.490 5.490 24 C 0.119 3.881 25 C -0.103 4.103 26 C -0.138 4.138 27 C 0.099 3.901 28 C -0.128 4.128 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.244 0.756 37 H 0.076 0.924 38 H 0.027 0.973 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.174 0.826 43 H 0.199 0.801 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.136 0.864 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.034 0.966 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 10.285 -15.532 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.022 4.022 4 C 0.008 3.992 5 N -0.303 5.303 6 C -0.346 4.346 7 H 0.061 0.939 8 C -0.225 4.225 9 N -0.564 5.564 10 Si 0.765 3.235 11 H -0.202 1.202 12 H -0.230 1.230 13 H -0.222 1.222 14 C 0.066 3.934 15 C -0.165 4.165 16 C -0.001 4.001 17 N -0.324 5.324 18 C 0.342 3.658 19 O -0.459 6.459 20 C -0.103 4.103 21 C -0.167 4.167 22 C -0.053 4.053 23 N -0.201 5.201 24 C -0.018 4.018 25 C -0.160 4.160 26 C -0.158 4.158 27 C -0.023 4.023 28 C -0.168 4.168 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.191 0.809 43 H 0.216 0.784 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.154 0.846 48 H 0.128 0.872 49 H 0.124 0.876 50 H 0.052 0.948 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.443 9.867 -16.130 20.708 hybrid contribution 0.648 -1.196 1.588 2.091 sum -7.795 8.671 -14.542 18.639 Atomic orbital electron populations 1.22799 0.81790 1.02349 1.00095 1.88156 1.19388 1.28948 1.95180 1.23242 0.96598 0.83855 0.98472 1.21050 0.89883 0.96433 0.91792 1.43962 1.75368 1.02099 1.08845 1.18769 1.35893 0.83314 0.96577 0.93897 1.25297 0.98320 0.99481 0.99392 1.70061 1.38203 1.36501 1.11592 0.85734 0.76914 0.83624 0.77245 1.20166 1.22959 1.22224 1.20559 0.91288 0.94175 0.87398 1.22184 0.99696 0.98246 0.96341 1.21666 0.94158 0.99361 0.84906 1.48114 1.08912 1.66182 1.09167 1.18659 0.87465 0.76269 0.83444 1.90737 1.16912 1.53405 1.84861 1.20318 0.95957 0.98886 0.95094 1.22817 0.92600 1.00726 1.00533 1.23358 1.00056 0.93610 0.88270 1.67478 1.17338 1.06457 1.28779 1.21634 0.89353 0.95795 0.95020 1.20811 1.03256 0.96240 0.95723 1.22154 1.01228 0.98355 0.94101 1.22637 0.78435 1.01975 0.99222 1.22240 1.00728 0.98658 0.95179 0.93737 0.93501 0.90471 0.93870 0.93653 0.91390 0.92711 0.94670 0.90588 0.95409 0.92632 0.91100 0.88396 0.80852 0.78420 0.89387 0.89569 0.89431 0.84599 0.87223 0.87562 0.94758 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.35 10.18 -148.98 -1.52 -17.87 16 3 C 0.06 2.06 6.28 71.98 0.45 2.51 16 4 C 0.13 5.81 5.68 86.38 0.49 6.30 16 5 N -0.58 -26.21 2.37 -677.89 -1.61 -27.82 16 6 C -0.21 -11.31 7.93 84.03 0.67 -10.65 16 7 H 0.04 2.37 6.67 -2.91 -0.02 2.35 16 8 C -0.03 -1.61 4.93 84.86 0.42 -1.19 16 9 N -0.92 -53.30 11.36 21.65 0.25 -53.06 16 10 Si 0.93 46.79 29.62 68.60 2.03 48.82 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 13 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 14 C 0.17 6.10 2.58 45.02 0.12 6.21 16 15 C -0.12 -4.63 5.39 30.67 0.17 -4.47 16 16 C 0.12 3.60 6.44 86.36 0.56 4.15 16 17 N -0.59 -16.34 2.97 -821.12 -2.44 -18.78 16 18 C 0.55 16.95 7.44 86.88 0.65 17.60 16 19 O -0.58 -22.16 16.30 -3.74 -0.06 -22.22 16 20 C -0.09 -2.27 5.35 -19.88 -0.11 -2.38 16 21 C -0.15 -2.56 7.47 22.63 0.17 -2.39 16 22 C 0.10 1.67 11.17 84.67 0.95 2.61 16 23 N -0.49 -10.17 10.25 -184.05 -1.89 -12.06 16 24 C 0.12 2.52 6.78 42.55 0.29 2.80 16 25 C -0.10 -1.54 10.17 71.24 0.72 -0.82 16 26 C -0.14 -3.36 9.35 22.63 0.21 -3.15 16 27 C 0.10 2.14 4.83 86.51 0.42 2.56 16 28 C -0.13 -3.95 5.21 30.82 0.16 -3.79 16 29 H 0.04 1.13 8.14 -2.38 -0.02 1.12 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 3.58 5.34 -2.38 -0.01 3.56 16 35 H 0.05 2.11 7.97 -2.39 -0.02 2.09 16 36 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 37 H 0.08 2.29 7.84 -2.39 -0.02 2.27 16 38 H 0.03 1.25 7.83 -2.39 -0.02 1.23 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.34 7.00 -2.39 -0.02 2.33 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.17 2.02 6.00 -2.91 -0.02 2.01 16 43 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.09 1.10 8.08 -2.38 -0.02 1.08 16 47 H 0.14 3.38 8.04 -2.91 -0.02 3.36 16 48 H 0.11 1.61 8.06 -2.38 -0.02 1.59 16 49 H 0.11 2.00 4.38 -2.39 -0.01 1.99 16 50 H 0.03 1.30 6.87 -2.39 -0.02 1.29 16 51 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -73.64 404.22 3.26 -70.38 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.92 Total: 14.65 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 7.57 Total: 17.95 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -5.68 Total: -111.71 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.58 Total: -40.09 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -73.64 3.26 -70.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277413049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.765 kcal (2) G-P(sol) polarization free energy of solvation -73.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds