Wall clock time and date at job start Wed Apr 1 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38671 * 120.42155 * 2 1 4 4 C 1.38632 * 118.41789 * 180.24120 * 3 2 1 5 5 C 1.38227 * 119.16286 * 359.75349 * 4 3 2 6 6 N 1.31857 * 120.76436 * 359.97438 * 5 4 3 7 7 C 1.31891 * 121.72316 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.61493 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47152 * 164.99710 * 8 7 6 10 10 N 1.46500 * 109.47155 * 44.99708 * 8 7 6 11 11 C 1.34779 * 119.99793 * 154.99862 * 10 8 7 12 12 O 1.21348 * 119.99941 * 0.02562 * 11 10 8 13 13 C 1.49452 * 119.99831 * 180.02562 * 11 10 8 14 14 O 1.21355 * 119.99739 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00121 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00083 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47096 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47208 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00122 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99744 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00324 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47023 * 89.99602 * 22 20 18 24 24 H 1.48490 * 109.47377 * 210.00053 * 22 20 18 25 25 H 1.48502 * 109.46982 * 330.00124 * 22 20 18 26 26 C 1.53000 * 109.46912 * 284.99938 * 8 7 6 27 27 C 1.53001 * 109.46886 * 180.02562 * 26 8 7 28 28 C 1.53002 * 109.47233 * 299.99748 * 26 8 7 29 29 C 1.52996 * 109.47328 * 60.00217 * 26 8 7 30 30 H 1.09002 * 109.47333 * 270.25467 * 1 2 3 31 31 H 1.09000 * 109.46732 * 30.24981 * 1 2 3 32 32 H 1.08996 * 109.47456 * 150.24810 * 1 2 3 33 33 H 1.07995 * 120.78528 * 359.97068 * 3 2 1 34 34 H 1.08000 * 120.41659 * 179.72639 * 4 3 2 35 35 H 1.07997 * 119.61622 * 180.02562 * 5 4 3 36 36 H 0.97004 * 120.00223 * 334.99953 * 10 8 7 37 37 H 0.97004 * 119.99693 * 359.97438 * 15 13 11 38 38 H 1.09002 * 109.47216 * 299.99855 * 16 15 13 39 39 H 1.09002 * 109.46823 * 59.99996 * 16 15 13 40 40 H 1.09002 * 109.47125 * 300.00100 * 17 16 15 41 41 H 1.09006 * 109.46747 * 60.00051 * 17 16 15 42 42 H 0.97004 * 119.99561 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47508 * 59.99571 * 27 26 8 44 44 H 1.09000 * 109.47437 * 180.02562 * 27 26 8 45 45 H 1.09001 * 109.47109 * 299.99380 * 27 26 8 46 46 H 1.09000 * 109.46986 * 60.00203 * 28 26 8 47 47 H 1.08993 * 109.47662 * 180.02562 * 28 26 8 48 48 H 1.09002 * 109.47075 * 300.00932 * 28 26 8 49 49 H 1.08992 * 109.47554 * 59.99639 * 29 26 8 50 50 H 1.09004 * 109.47108 * 179.97438 * 29 26 8 51 51 H 1.09000 * 109.46870 * 299.99783 * 29 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5947 1.1473 -0.0051 5 6 4.2256 -0.0825 -0.0049 6 7 3.5254 -1.1998 0.0007 7 6 2.2065 -1.1917 0.0057 8 6 1.4538 -2.4972 0.0114 9 1 0.4134 -2.3156 0.2810 10 7 2.0597 -3.4060 0.9877 11 6 1.3224 -4.3891 1.5413 12 8 0.1568 -4.5216 1.2308 13 6 1.9403 -5.3159 2.5377 14 8 3.1061 -5.1835 2.8479 15 7 1.2032 -6.2992 3.0910 16 6 1.8091 -7.2080 4.0673 17 6 0.7645 -8.2227 4.5364 18 6 1.3875 -9.1572 5.5412 19 1 2.4248 -9.0390 5.8178 20 6 0.6334 -10.1631 6.1073 21 7 -0.6298 -10.3067 5.7708 22 14 1.4055 -11.3210 7.3533 23 1 1.2349 -10.7636 8.7190 24 1 0.7427 -12.6474 7.2735 25 1 2.8530 -11.4724 7.0577 26 6 1.5172 -3.1285 -1.3809 27 6 0.7524 -4.4536 -1.3753 28 6 0.8844 -2.1794 -2.4005 29 6 2.9775 -3.3835 -1.7592 30 1 -0.3634 0.0046 1.0277 31 1 -0.3633 0.8878 -0.5177 32 1 -0.3634 -0.8921 -0.5099 33 1 1.6890 2.1422 -0.0005 34 1 4.1737 2.0590 -0.0097 35 1 5.3046 -0.1288 -0.0084 36 1 2.9915 -3.3003 1.2357 37 1 0.2715 -6.4052 2.8428 38 1 2.6446 -7.7337 3.6048 39 1 2.1686 -6.6355 4.9223 40 1 -0.0707 -7.6968 4.9991 41 1 0.4046 -8.7952 3.6815 42 1 -1.1604 -11.0142 6.1693 43 1 -0.2880 -4.2716 -1.1058 44 1 0.7979 -4.9037 -2.3670 45 1 1.2029 -5.1300 -0.6488 46 1 1.4288 -1.2351 -2.4046 47 1 0.9291 -2.6292 -3.3923 48 1 -0.1560 -1.9977 -2.1309 49 1 3.4283 -4.0596 -1.0329 50 1 3.0226 -3.8337 -2.7509 51 1 3.5220 -2.4392 -1.7633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333401497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:51 Heat of formation + Delta-G solvation = -50.283814 kcal Electronic energy + Delta-G solvation = -31111.628016 eV Core-core repulsion = 27010.600766 eV Total energy + Delta-G solvation = -4101.027250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.46754 -40.21863 -38.60421 -37.20005 -35.15546 -34.14057 -33.81545 -32.82965 -32.23882 -29.79031 -28.17606 -27.53654 -27.27921 -26.89106 -25.35854 -23.61278 -22.66657 -22.19156 -21.00236 -20.14727 -19.12253 -18.43178 -17.22944 -16.84387 -16.57807 -16.28976 -16.01419 -15.56300 -15.27625 -14.95186 -14.63678 -14.54651 -14.41281 -14.25317 -13.72845 -13.68775 -13.44967 -13.29665 -13.10693 -12.99674 -12.85347 -12.82498 -12.30906 -12.30174 -12.15645 -11.76347 -11.58368 -11.49992 -11.35565 -11.20064 -11.04713 -10.89309 -10.79779 -10.65104 -10.37341 -10.08884 -9.79661 -9.75746 -9.43477 -9.31302 -9.11855 -9.04217 -8.65468 -8.39798 -6.08746 -4.12189 0.65518 0.87937 1.67500 2.58764 3.30103 3.35600 3.36470 3.40306 3.48646 3.77815 3.95570 4.23269 4.39808 4.42058 4.50306 4.55464 4.62648 4.72695 4.78820 4.87004 5.01056 5.13528 5.17100 5.21546 5.28158 5.28384 5.38300 5.46154 5.55816 5.64232 5.69442 5.74649 5.79355 5.84384 5.88957 5.96500 6.00805 6.21372 6.23269 6.27009 6.27220 6.30230 6.38427 6.63781 6.73178 7.16611 7.50068 7.59220 7.60099 7.74162 7.88996 7.99648 8.24367 8.38987 8.93441 9.52595 11.02745 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.002105 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.693193 B =13296.216271 C =13721.943654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C -0.077 4.077 4 C -0.167 4.167 5 C 0.095 3.905 6 N -0.465 5.465 7 C 0.123 3.877 8 C 0.203 3.797 9 H 0.109 0.891 10 N -0.690 5.690 11 C 0.509 3.491 12 O -0.517 6.517 13 C 0.496 3.504 14 O -0.531 6.531 15 N -0.686 5.686 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.074 4.074 27 C -0.135 4.135 28 C -0.140 4.140 29 C -0.140 4.140 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.419 0.581 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.049 0.951 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 25.562 -17.770 31.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.187 4.187 5 C -0.062 4.062 6 N -0.174 5.174 7 C -0.015 4.015 8 C 0.098 3.902 9 H 0.127 0.873 10 N -0.344 5.344 11 C 0.290 3.710 12 O -0.393 6.393 13 C 0.276 3.724 14 O -0.409 6.409 15 N -0.337 5.337 16 C -0.003 4.003 17 C -0.026 4.026 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.076 4.076 27 C -0.192 4.192 28 C -0.198 4.198 29 C -0.197 4.197 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.256 0.744 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.280 24.609 -17.700 30.614 hybrid contribution 0.029 0.269 0.702 0.752 sum 4.309 24.879 -16.999 30.438 Atomic orbital electron populations 1.20970 0.90087 1.03697 1.03300 1.20655 0.97672 0.93236 1.00645 1.21476 0.94195 0.97963 0.96644 1.22165 0.95253 0.99742 1.01574 1.22770 1.00418 0.87493 0.95556 1.67443 1.07276 1.31551 1.11100 1.20965 0.90029 0.93944 0.96581 1.20036 0.96872 0.84192 0.89111 0.87342 1.45691 1.16057 1.30482 1.42167 1.20400 0.86583 0.81970 0.82070 1.90749 1.16141 1.71086 1.61303 1.19985 0.86829 0.82719 0.82893 1.90740 1.16142 1.71981 1.62054 1.46211 1.15472 1.29837 1.42226 1.21922 0.98196 0.90694 0.89453 1.19352 0.93608 0.92748 0.96903 1.21016 0.97444 1.13721 1.23949 0.92182 1.25002 0.94852 0.97565 0.96880 1.69962 1.06976 1.32830 1.43321 0.86498 0.79448 0.80061 0.81465 1.20560 1.21163 1.19727 1.20927 0.97284 0.96351 0.92995 1.21935 1.00609 0.95389 1.01312 1.21913 1.00428 0.98741 0.98724 1.21902 0.94476 1.02556 1.00768 0.90400 0.90909 0.90315 0.84704 0.84722 0.82507 0.74354 0.75419 0.91900 0.91948 0.95693 0.95657 0.92795 0.91556 0.92965 0.92531 0.92865 0.92065 0.92236 0.92249 0.93172 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.22 36.01 0.33 -0.44 16 2 C -0.12 -0.95 5.32 -104.48 -0.56 -1.50 16 3 C -0.08 -0.50 9.86 -39.28 -0.39 -0.89 16 4 C -0.17 -1.04 10.11 -39.44 -0.40 -1.44 16 5 C 0.09 0.73 11.18 -17.54 -0.20 0.53 16 6 N -0.47 -4.61 7.30 -9.47 -0.07 -4.68 16 7 C 0.12 1.19 4.32 -82.59 -0.36 0.84 16 8 C 0.20 2.17 1.51 -69.08 -0.10 2.07 16 9 H 0.11 1.18 5.36 -51.93 -0.28 0.90 16 10 N -0.69 -8.88 4.17 -55.36 -0.23 -9.12 16 11 C 0.51 7.72 6.25 -11.58 -0.07 7.65 16 12 O -0.52 -8.23 13.60 5.50 0.07 -8.16 16 13 C 0.50 8.80 7.89 -11.59 -0.09 8.71 16 14 O -0.53 -10.50 16.48 5.49 0.09 -10.41 16 15 N -0.69 -12.69 5.55 -60.73 -0.34 -13.03 16 16 C 0.12 2.53 5.61 -4.04 -0.02 2.50 16 17 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.07 -0.74 0.62 -154.51 -0.10 -0.84 16 27 C -0.14 -1.55 7.00 37.16 0.26 -1.29 16 28 C -0.14 -1.13 7.56 37.16 0.28 -0.85 16 29 C -0.14 -1.44 7.78 37.16 0.29 -1.15 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.33 8.10 -51.93 -0.42 -0.10 16 32 H 0.08 0.51 4.45 -51.93 -0.23 0.28 16 33 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.42 5.57 7.52 -40.82 -0.31 5.27 16 37 H 0.41 7.17 7.95 -40.82 -0.32 6.84 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.77 5.77 -51.93 -0.30 0.47 16 46 H 0.05 0.42 6.84 -51.93 -0.36 0.07 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.43 6.86 -51.93 -0.36 0.07 16 49 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.69 5.90 -51.93 -0.31 0.38 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -31.59 404.35 -8.19 -39.78 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.86 Total: 7.78 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.67 Total: 0.83 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.10 Total: -52.29 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.17 Total: -18.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.59 -8.19 -39.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333401497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.503 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds