Wall clock time and date at job start Wed Apr 1 2020 06:17:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.38671 * 120.42155 * 2 1
4 4 C 1.38632 * 118.41789 * 180.24120 * 3 2 1
5 5 C 1.38227 * 119.16286 * 359.75349 * 4 3 2
6 6 N 1.31857 * 120.76436 * 359.97438 * 5 4 3
7 7 C 1.31891 * 121.72316 * 0.02562 * 6 5 4
8 8 C 1.50703 * 119.61493 * 179.97438 * 7 6 5
9 9 H 1.09002 * 109.47152 * 164.99710 * 8 7 6
10 10 N 1.46500 * 109.47155 * 44.99708 * 8 7 6
11 11 C 1.34779 * 119.99793 * 154.99862 * 10 8 7
12 12 O 1.21348 * 119.99941 * 0.02562 * 11 10 8
13 13 C 1.49452 * 119.99831 * 180.02562 * 11 10 8
14 14 O 1.21355 * 119.99739 * 359.97438 * 13 11 10
15 15 N 1.34774 * 120.00121 * 180.02562 * 13 11 10
16 16 C 1.46500 * 120.00083 * 179.97438 * 15 13 11
17 17 C 1.53000 * 109.47096 * 179.97438 * 16 15 13
18 18 C 1.50699 * 109.47208 * 180.02562 * 17 16 15
19 19 H 1.07999 * 120.00040 * 0.02562 * 18 17 16
20 20 C 1.37875 * 120.00122 * 180.02562 * 18 17 16
21 21 N 1.31514 * 119.99744 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 120.00324 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47023 * 89.99602 * 22 20 18
24 24 H 1.48490 * 109.47377 * 210.00053 * 22 20 18
25 25 H 1.48502 * 109.46982 * 330.00124 * 22 20 18
26 26 C 1.53000 * 109.46912 * 284.99938 * 8 7 6
27 27 C 1.53001 * 109.46886 * 180.02562 * 26 8 7
28 28 C 1.53002 * 109.47233 * 299.99748 * 26 8 7
29 29 C 1.52996 * 109.47328 * 60.00217 * 26 8 7
30 30 H 1.09002 * 109.47333 * 270.25467 * 1 2 3
31 31 H 1.09000 * 109.46732 * 30.24981 * 1 2 3
32 32 H 1.08996 * 109.47456 * 150.24810 * 1 2 3
33 33 H 1.07995 * 120.78528 * 359.97068 * 3 2 1
34 34 H 1.08000 * 120.41659 * 179.72639 * 4 3 2
35 35 H 1.07997 * 119.61622 * 180.02562 * 5 4 3
36 36 H 0.97004 * 120.00223 * 334.99953 * 10 8 7
37 37 H 0.97004 * 119.99693 * 359.97438 * 15 13 11
38 38 H 1.09002 * 109.47216 * 299.99855 * 16 15 13
39 39 H 1.09002 * 109.46823 * 59.99996 * 16 15 13
40 40 H 1.09002 * 109.47125 * 300.00100 * 17 16 15
41 41 H 1.09006 * 109.46747 * 60.00051 * 17 16 15
42 42 H 0.97004 * 119.99561 * 180.02562 * 21 20 18
43 43 H 1.09002 * 109.47508 * 59.99571 * 27 26 8
44 44 H 1.09000 * 109.47437 * 180.02562 * 27 26 8
45 45 H 1.09001 * 109.47109 * 299.99380 * 27 26 8
46 46 H 1.09000 * 109.46986 * 60.00203 * 28 26 8
47 47 H 1.08993 * 109.47662 * 180.02562 * 28 26 8
48 48 H 1.09002 * 109.47075 * 300.00932 * 28 26 8
49 49 H 1.08992 * 109.47554 * 59.99639 * 29 26 8
50 50 H 1.09004 * 109.47108 * 179.97438 * 29 26 8
51 51 H 1.09000 * 109.46870 * 299.99783 * 29 26 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2092 1.1958 0.0000
4 6 3.5947 1.1473 -0.0051
5 6 4.2256 -0.0825 -0.0049
6 7 3.5254 -1.1998 0.0007
7 6 2.2065 -1.1917 0.0057
8 6 1.4538 -2.4972 0.0114
9 1 0.4134 -2.3156 0.2810
10 7 2.0597 -3.4060 0.9877
11 6 1.3224 -4.3891 1.5413
12 8 0.1568 -4.5216 1.2308
13 6 1.9403 -5.3159 2.5377
14 8 3.1061 -5.1835 2.8479
15 7 1.2032 -6.2992 3.0910
16 6 1.8091 -7.2080 4.0673
17 6 0.7645 -8.2227 4.5364
18 6 1.3875 -9.1572 5.5412
19 1 2.4248 -9.0390 5.8178
20 6 0.6334 -10.1631 6.1073
21 7 -0.6298 -10.3067 5.7708
22 14 1.4055 -11.3210 7.3533
23 1 1.2349 -10.7636 8.7190
24 1 0.7427 -12.6474 7.2735
25 1 2.8530 -11.4724 7.0577
26 6 1.5172 -3.1285 -1.3809
27 6 0.7524 -4.4536 -1.3753
28 6 0.8844 -2.1794 -2.4005
29 6 2.9775 -3.3835 -1.7592
30 1 -0.3634 0.0046 1.0277
31 1 -0.3633 0.8878 -0.5177
32 1 -0.3634 -0.8921 -0.5099
33 1 1.6890 2.1422 -0.0005
34 1 4.1737 2.0590 -0.0097
35 1 5.3046 -0.1288 -0.0084
36 1 2.9915 -3.3003 1.2357
37 1 0.2715 -6.4052 2.8428
38 1 2.6446 -7.7337 3.6048
39 1 2.1686 -6.6355 4.9223
40 1 -0.0707 -7.6968 4.9991
41 1 0.4046 -8.7952 3.6815
42 1 -1.1604 -11.0142 6.1693
43 1 -0.2880 -4.2716 -1.1058
44 1 0.7979 -4.9037 -2.3670
45 1 1.2029 -5.1300 -0.6488
46 1 1.4288 -1.2351 -2.4046
47 1 0.9291 -2.6292 -3.3923
48 1 -0.1560 -1.9977 -2.1309
49 1 3.4283 -4.0596 -1.0329
50 1 3.0226 -3.8337 -2.7509
51 1 3.5220 -2.4392 -1.7633
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001333401497.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:17:50
Heat of formation + Delta-G solvation = -70.435073 kcal
Electronic energy + Delta-G solvation = -31112.501840 eV
Core-core repulsion = 27010.600766 eV
Total energy + Delta-G solvation = -4101.901074 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.32831 -41.30613 -39.83919 -38.19737 -36.83959 -35.09056 -34.69067 -34.60464
-32.90312 -31.70081 -28.89796 -28.32237 -28.15484 -27.70924 -26.99069 -24.95855
-23.48808 -22.81562 -22.78275 -21.46476 -20.06849 -19.61343 -18.59654 -18.08532
-17.56423 -17.44636 -17.24457 -16.59163 -16.51452 -16.26707 -16.09515 -15.63923
-15.45882 -15.05359 -14.97627 -14.78498 -14.38384 -14.30330 -14.25756 -13.85415
-13.74954 -13.62216 -13.39607 -13.26825 -13.11726 -12.95363 -12.86578 -12.73760
-12.56446 -12.53260 -12.32298 -12.29055 -12.23919 -11.71810 -11.69385 -11.57933
-11.44091 -10.73005 -10.62036 -10.61616 -10.45498 -10.23131 -10.13399 -9.70981
-8.23922 -6.35106 0.07991 0.32232 0.35639 1.32448 1.43171 1.43275
1.54968 2.11333 2.39372 2.63789 2.83710 3.10905 3.11348 3.42969
3.61970 3.71971 3.89300 3.97357 4.02831 4.10954 4.15849 4.37885
4.39100 4.43407 4.52941 4.57862 4.63920 4.73688 4.74813 4.77442
4.79589 4.82790 4.90436 4.97814 5.00437 5.05365 5.07173 5.17033
5.18965 5.27452 5.30855 5.35047 5.40898 5.42763 5.48218 5.54046
5.74977 5.79997 5.93700 6.12456 6.34928 6.69412 6.78869 6.91926
7.02848 7.34308 8.88116
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019073 B = 0.002105 C = 0.002040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1467.693193 B =13296.216271 C =13721.943654
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.124 4.124
3 C -0.079 4.079
4 C -0.159 4.159
5 C 0.079 3.921
6 N -0.490 5.490
7 C 0.102 3.898
8 C 0.202 3.798
9 H 0.107 0.893
10 N -0.677 5.677
11 C 0.516 3.484
12 O -0.526 6.526
13 C 0.497 3.503
14 O -0.552 6.552
15 N -0.686 5.686
16 C 0.138 3.862
17 C 0.020 3.980
18 C -0.545 4.545
19 H 0.064 0.936
20 C 0.005 3.995
21 N -0.927 5.927
22 Si 0.968 3.032
23 H -0.272 1.272
24 H -0.281 1.281
25 H -0.264 1.264
26 C -0.071 4.071
27 C -0.132 4.132
28 C -0.133 4.133
29 C -0.133 4.133
30 H 0.075 0.925
31 H 0.094 0.906
32 H 0.073 0.927
33 H 0.162 0.838
34 H 0.164 0.836
35 H 0.174 0.826
36 H 0.417 0.583
37 H 0.415 0.585
38 H 0.060 0.940
39 H 0.060 0.940
40 H 0.008 0.992
41 H 0.008 0.992
42 H 0.266 0.734
43 H 0.059 0.941
44 H 0.061 0.939
45 H 0.031 0.969
46 H 0.056 0.944
47 H 0.067 0.933
48 H 0.068 0.932
49 H 0.039 0.961
50 H 0.056 0.944
51 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.623 27.608 -18.374 33.484
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.126 4.126
3 C -0.105 4.105
4 C -0.178 4.178
5 C -0.078 4.078
6 N -0.199 5.199
7 C -0.036 4.036
8 C 0.098 3.902
9 H 0.125 0.875
10 N -0.330 5.330
11 C 0.296 3.704
12 O -0.403 6.403
13 C 0.278 3.722
14 O -0.430 6.430
15 N -0.338 5.338
16 C 0.015 3.985
17 C -0.017 4.017
18 C -0.583 4.583
19 H 0.082 0.918
20 C -0.194 4.194
21 N -0.567 5.567
22 Si 0.792 3.208
23 H -0.197 1.197
24 H -0.207 1.207
25 H -0.188 1.188
26 C -0.072 4.072
27 C -0.189 4.189
28 C -0.191 4.191
29 C -0.191 4.191
30 H 0.093 0.907
31 H 0.112 0.888
32 H 0.092 0.908
33 H 0.180 0.820
34 H 0.181 0.819
35 H 0.191 0.809
36 H 0.254 0.746
37 H 0.252 0.748
38 H 0.078 0.922
39 H 0.078 0.922
40 H 0.027 0.973
41 H 0.026 0.974
42 H 0.075 0.925
43 H 0.079 0.921
44 H 0.080 0.920
45 H 0.050 0.950
46 H 0.075 0.925
47 H 0.086 0.914
48 H 0.087 0.913
49 H 0.058 0.942
50 H 0.075 0.925
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 4.910 26.688 -18.331 32.747
hybrid contribution -0.125 -0.268 0.845 0.895
sum 4.785 26.420 -17.486 32.042
Atomic orbital electron populations
1.21006 0.89171 1.04522 1.03366 1.20847 0.98455 0.93150 1.00195
1.21850 0.94490 0.98488 0.95649 1.22504 0.95498 1.00217 0.99599
1.23164 1.01300 0.87666 0.95710 1.67358 1.07593 1.33014 1.11979
1.20798 0.90236 0.93745 0.98796 1.20184 0.96863 0.84546 0.88615
0.87530 1.45706 1.15704 1.29770 1.41803 1.19826 0.86461 0.82196
0.81890 1.90749 1.16351 1.71465 1.61714 1.20418 0.86454 0.82503
0.82805 1.90722 1.17048 1.72493 1.62769 1.46038 1.15778 1.29908
1.42046 1.21476 0.96820 0.90255 0.89933 1.19166 0.93856 0.92975
0.95749 1.21440 0.97848 1.14458 1.24600 0.91816 1.25917 0.95309
0.99284 0.98875 1.70078 1.08356 1.33667 1.44588 0.85402 0.78788
0.77733 0.78867 1.19733 1.20663 1.18849 1.20907 0.96981 0.96029
0.93333 1.21891 1.00158 0.95836 1.01059 1.21847 1.00761 0.98241
0.98212 1.21832 0.94597 1.02159 1.00472 0.90677 0.88759 0.90823
0.82004 0.81855 0.80939 0.74573 0.74829 0.92206 0.92169 0.97343
0.97360 0.92544 0.92149 0.91954 0.95035 0.92509 0.91369 0.91335
0.94229 0.92494 0.91308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.32 9.22 71.24 0.66 -0.67 16
2 C -0.12 -1.74 5.32 -19.77 -0.11 -1.84 16
3 C -0.08 -0.80 9.86 22.47 0.22 -0.58 16
4 C -0.16 -1.53 10.11 22.36 0.23 -1.30 16
5 C 0.08 1.08 11.18 84.69 0.95 2.03 16
6 N -0.49 -9.34 7.30 -183.88 -1.34 -10.68 16
7 C 0.10 1.88 4.32 42.54 0.18 2.06 16
8 C 0.20 4.28 1.51 44.25 0.07 4.34 16
9 H 0.11 2.29 5.36 -2.39 -0.01 2.28 16
10 N -0.68 -17.74 4.17 -447.42 -1.87 -19.60 16
11 C 0.52 16.00 6.25 87.27 0.55 16.54 16
12 O -0.53 -17.03 13.60 -3.24 -0.04 -17.08 16
13 C 0.50 18.02 7.89 87.27 0.69 18.71 16
14 O -0.55 -22.15 16.48 -3.26 -0.05 -22.20 16
15 N -0.69 -26.01 5.55 -464.40 -2.58 -28.58 16
16 C 0.14 5.98 5.61 86.38 0.48 6.46 16
17 C 0.02 1.03 5.09 29.85 0.15 1.18 16
18 C -0.55 -30.51 9.11 25.60 0.23 -30.28 16
19 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16
20 C 0.00 0.28 5.46 84.65 0.46 0.74 16
21 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16
22 Si 0.97 43.82 29.54 68.60 2.03 45.84 16
23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16
25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16
26 C -0.07 -1.39 0.62 -52.18 -0.03 -1.42 16
27 C -0.13 -3.04 7.00 71.98 0.50 -2.53 16
28 C -0.13 -1.94 7.56 71.98 0.54 -1.39 16
29 C -0.13 -2.72 7.78 71.98 0.56 -2.16 16
30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
31 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16
32 H 0.07 0.86 4.45 -2.39 -0.01 0.84 16
33 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16
34 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16
35 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16
36 H 0.42 11.36 7.52 -92.71 -0.70 10.66 16
37 H 0.42 14.97 7.95 -92.71 -0.74 14.23 16
38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16
39 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16
40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16
41 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16
42 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16
43 H 0.06 1.44 7.53 -2.39 -0.02 1.42 16
44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
45 H 0.03 0.87 5.77 -2.39 -0.01 0.85 16
46 H 0.06 0.80 6.84 -2.39 -0.02 0.79 16
47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
48 H 0.07 0.88 6.86 -2.39 -0.02 0.86 16
49 H 0.04 0.95 7.60 -2.39 -0.02 0.93 16
50 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16
51 H 0.07 1.39 5.90 -2.39 -0.01 1.38 16
Total: -1.00 -68.16 404.35 2.29 -65.87
By element:
Atomic # 1 Polarization: 31.89 SS G_CDS: -0.47 Total: 31.42 kcal
Atomic # 6 Polarization: 3.56 SS G_CDS: 6.34 Total: 9.90 kcal
Atomic # 7 Polarization: -108.25 SS G_CDS: -5.50 Total: -113.75 kcal
Atomic # 8 Polarization: -39.18 SS G_CDS: -0.10 Total: -39.28 kcal
Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal
Total: -68.16 2.29 -65.87 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001333401497.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.568 kcal
(2) G-P(sol) polarization free energy of solvation -68.161 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.730 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.435 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds