Wall clock time and date at job start Wed Apr 1 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38671 * 120.42155 * 2 1 4 4 C 1.38632 * 118.41789 * 180.24120 * 3 2 1 5 5 C 1.38227 * 119.16286 * 359.75349 * 4 3 2 6 6 N 1.31857 * 120.76436 * 359.97438 * 5 4 3 7 7 C 1.31891 * 121.72316 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.61493 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47152 * 164.99710 * 8 7 6 10 10 N 1.46500 * 109.47155 * 44.99708 * 8 7 6 11 11 C 1.34779 * 119.99793 * 154.99862 * 10 8 7 12 12 O 1.21348 * 119.99941 * 0.02562 * 11 10 8 13 13 C 1.49452 * 119.99831 * 180.02562 * 11 10 8 14 14 O 1.21355 * 119.99739 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00121 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00083 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47096 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47208 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00122 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99744 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00324 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47023 * 89.99602 * 22 20 18 24 24 H 1.48490 * 109.47377 * 210.00053 * 22 20 18 25 25 H 1.48502 * 109.46982 * 330.00124 * 22 20 18 26 26 C 1.53000 * 109.46912 * 284.99938 * 8 7 6 27 27 C 1.53001 * 109.46886 * 180.02562 * 26 8 7 28 28 C 1.53002 * 109.47233 * 299.99748 * 26 8 7 29 29 C 1.52996 * 109.47328 * 60.00217 * 26 8 7 30 30 H 1.09002 * 109.47333 * 270.25467 * 1 2 3 31 31 H 1.09000 * 109.46732 * 30.24981 * 1 2 3 32 32 H 1.08996 * 109.47456 * 150.24810 * 1 2 3 33 33 H 1.07995 * 120.78528 * 359.97068 * 3 2 1 34 34 H 1.08000 * 120.41659 * 179.72639 * 4 3 2 35 35 H 1.07997 * 119.61622 * 180.02562 * 5 4 3 36 36 H 0.97004 * 120.00223 * 334.99953 * 10 8 7 37 37 H 0.97004 * 119.99693 * 359.97438 * 15 13 11 38 38 H 1.09002 * 109.47216 * 299.99855 * 16 15 13 39 39 H 1.09002 * 109.46823 * 59.99996 * 16 15 13 40 40 H 1.09002 * 109.47125 * 300.00100 * 17 16 15 41 41 H 1.09006 * 109.46747 * 60.00051 * 17 16 15 42 42 H 0.97004 * 119.99561 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.47508 * 59.99571 * 27 26 8 44 44 H 1.09000 * 109.47437 * 180.02562 * 27 26 8 45 45 H 1.09001 * 109.47109 * 299.99380 * 27 26 8 46 46 H 1.09000 * 109.46986 * 60.00203 * 28 26 8 47 47 H 1.08993 * 109.47662 * 180.02562 * 28 26 8 48 48 H 1.09002 * 109.47075 * 300.00932 * 28 26 8 49 49 H 1.08992 * 109.47554 * 59.99639 * 29 26 8 50 50 H 1.09004 * 109.47108 * 179.97438 * 29 26 8 51 51 H 1.09000 * 109.46870 * 299.99783 * 29 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5947 1.1473 -0.0051 5 6 4.2256 -0.0825 -0.0049 6 7 3.5254 -1.1998 0.0007 7 6 2.2065 -1.1917 0.0057 8 6 1.4538 -2.4972 0.0114 9 1 0.4134 -2.3156 0.2810 10 7 2.0597 -3.4060 0.9877 11 6 1.3224 -4.3891 1.5413 12 8 0.1568 -4.5216 1.2308 13 6 1.9403 -5.3159 2.5377 14 8 3.1061 -5.1835 2.8479 15 7 1.2032 -6.2992 3.0910 16 6 1.8091 -7.2080 4.0673 17 6 0.7645 -8.2227 4.5364 18 6 1.3875 -9.1572 5.5412 19 1 2.4248 -9.0390 5.8178 20 6 0.6334 -10.1631 6.1073 21 7 -0.6298 -10.3067 5.7708 22 14 1.4055 -11.3210 7.3533 23 1 1.2349 -10.7636 8.7190 24 1 0.7427 -12.6474 7.2735 25 1 2.8530 -11.4724 7.0577 26 6 1.5172 -3.1285 -1.3809 27 6 0.7524 -4.4536 -1.3753 28 6 0.8844 -2.1794 -2.4005 29 6 2.9775 -3.3835 -1.7592 30 1 -0.3634 0.0046 1.0277 31 1 -0.3633 0.8878 -0.5177 32 1 -0.3634 -0.8921 -0.5099 33 1 1.6890 2.1422 -0.0005 34 1 4.1737 2.0590 -0.0097 35 1 5.3046 -0.1288 -0.0084 36 1 2.9915 -3.3003 1.2357 37 1 0.2715 -6.4052 2.8428 38 1 2.6446 -7.7337 3.6048 39 1 2.1686 -6.6355 4.9223 40 1 -0.0707 -7.6968 4.9991 41 1 0.4046 -8.7952 3.6815 42 1 -1.1604 -11.0142 6.1693 43 1 -0.2880 -4.2716 -1.1058 44 1 0.7979 -4.9037 -2.3670 45 1 1.2029 -5.1300 -0.6488 46 1 1.4288 -1.2351 -2.4046 47 1 0.9291 -2.6292 -3.3923 48 1 -0.1560 -1.9977 -2.1309 49 1 3.4283 -4.0596 -1.0329 50 1 3.0226 -3.8337 -2.7509 51 1 3.5220 -2.4392 -1.7633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333401497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:50 Heat of formation + Delta-G solvation = -70.435073 kcal Electronic energy + Delta-G solvation = -31112.501840 eV Core-core repulsion = 27010.600766 eV Total energy + Delta-G solvation = -4101.901074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.32831 -41.30613 -39.83919 -38.19737 -36.83959 -35.09056 -34.69067 -34.60464 -32.90312 -31.70081 -28.89796 -28.32237 -28.15484 -27.70924 -26.99069 -24.95855 -23.48808 -22.81562 -22.78275 -21.46476 -20.06849 -19.61343 -18.59654 -18.08532 -17.56423 -17.44636 -17.24457 -16.59163 -16.51452 -16.26707 -16.09515 -15.63923 -15.45882 -15.05359 -14.97627 -14.78498 -14.38384 -14.30330 -14.25756 -13.85415 -13.74954 -13.62216 -13.39607 -13.26825 -13.11726 -12.95363 -12.86578 -12.73760 -12.56446 -12.53260 -12.32298 -12.29055 -12.23919 -11.71810 -11.69385 -11.57933 -11.44091 -10.73005 -10.62036 -10.61616 -10.45498 -10.23131 -10.13399 -9.70981 -8.23922 -6.35106 0.07991 0.32232 0.35639 1.32448 1.43171 1.43275 1.54968 2.11333 2.39372 2.63789 2.83710 3.10905 3.11348 3.42969 3.61970 3.71971 3.89300 3.97357 4.02831 4.10954 4.15849 4.37885 4.39100 4.43407 4.52941 4.57862 4.63920 4.73688 4.74813 4.77442 4.79589 4.82790 4.90436 4.97814 5.00437 5.05365 5.07173 5.17033 5.18965 5.27452 5.30855 5.35047 5.40898 5.42763 5.48218 5.54046 5.74977 5.79997 5.93700 6.12456 6.34928 6.69412 6.78869 6.91926 7.02848 7.34308 8.88116 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.002105 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.693193 B =13296.216271 C =13721.943654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.159 4.159 5 C 0.079 3.921 6 N -0.490 5.490 7 C 0.102 3.898 8 C 0.202 3.798 9 H 0.107 0.893 10 N -0.677 5.677 11 C 0.516 3.484 12 O -0.526 6.526 13 C 0.497 3.503 14 O -0.552 6.552 15 N -0.686 5.686 16 C 0.138 3.862 17 C 0.020 3.980 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.264 1.264 26 C -0.071 4.071 27 C -0.132 4.132 28 C -0.133 4.133 29 C -0.133 4.133 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.417 0.583 37 H 0.415 0.585 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.266 0.734 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.039 0.961 50 H 0.056 0.944 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.623 27.608 -18.374 33.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.178 4.178 5 C -0.078 4.078 6 N -0.199 5.199 7 C -0.036 4.036 8 C 0.098 3.902 9 H 0.125 0.875 10 N -0.330 5.330 11 C 0.296 3.704 12 O -0.403 6.403 13 C 0.278 3.722 14 O -0.430 6.430 15 N -0.338 5.338 16 C 0.015 3.985 17 C -0.017 4.017 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.072 4.072 27 C -0.189 4.189 28 C -0.191 4.191 29 C -0.191 4.191 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.191 0.809 36 H 0.254 0.746 37 H 0.252 0.748 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.910 26.688 -18.331 32.747 hybrid contribution -0.125 -0.268 0.845 0.895 sum 4.785 26.420 -17.486 32.042 Atomic orbital electron populations 1.21006 0.89171 1.04522 1.03366 1.20847 0.98455 0.93150 1.00195 1.21850 0.94490 0.98488 0.95649 1.22504 0.95498 1.00217 0.99599 1.23164 1.01300 0.87666 0.95710 1.67358 1.07593 1.33014 1.11979 1.20798 0.90236 0.93745 0.98796 1.20184 0.96863 0.84546 0.88615 0.87530 1.45706 1.15704 1.29770 1.41803 1.19826 0.86461 0.82196 0.81890 1.90749 1.16351 1.71465 1.61714 1.20418 0.86454 0.82503 0.82805 1.90722 1.17048 1.72493 1.62769 1.46038 1.15778 1.29908 1.42046 1.21476 0.96820 0.90255 0.89933 1.19166 0.93856 0.92975 0.95749 1.21440 0.97848 1.14458 1.24600 0.91816 1.25917 0.95309 0.99284 0.98875 1.70078 1.08356 1.33667 1.44588 0.85402 0.78788 0.77733 0.78867 1.19733 1.20663 1.18849 1.20907 0.96981 0.96029 0.93333 1.21891 1.00158 0.95836 1.01059 1.21847 1.00761 0.98241 0.98212 1.21832 0.94597 1.02159 1.00472 0.90677 0.88759 0.90823 0.82004 0.81855 0.80939 0.74573 0.74829 0.92206 0.92169 0.97343 0.97360 0.92544 0.92149 0.91954 0.95035 0.92509 0.91369 0.91335 0.94229 0.92494 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.22 71.24 0.66 -0.67 16 2 C -0.12 -1.74 5.32 -19.77 -0.11 -1.84 16 3 C -0.08 -0.80 9.86 22.47 0.22 -0.58 16 4 C -0.16 -1.53 10.11 22.36 0.23 -1.30 16 5 C 0.08 1.08 11.18 84.69 0.95 2.03 16 6 N -0.49 -9.34 7.30 -183.88 -1.34 -10.68 16 7 C 0.10 1.88 4.32 42.54 0.18 2.06 16 8 C 0.20 4.28 1.51 44.25 0.07 4.34 16 9 H 0.11 2.29 5.36 -2.39 -0.01 2.28 16 10 N -0.68 -17.74 4.17 -447.42 -1.87 -19.60 16 11 C 0.52 16.00 6.25 87.27 0.55 16.54 16 12 O -0.53 -17.03 13.60 -3.24 -0.04 -17.08 16 13 C 0.50 18.02 7.89 87.27 0.69 18.71 16 14 O -0.55 -22.15 16.48 -3.26 -0.05 -22.20 16 15 N -0.69 -26.01 5.55 -464.40 -2.58 -28.58 16 16 C 0.14 5.98 5.61 86.38 0.48 6.46 16 17 C 0.02 1.03 5.09 29.85 0.15 1.18 16 18 C -0.55 -30.51 9.11 25.60 0.23 -30.28 16 19 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 20 C 0.00 0.28 5.46 84.65 0.46 0.74 16 21 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 22 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 C -0.07 -1.39 0.62 -52.18 -0.03 -1.42 16 27 C -0.13 -3.04 7.00 71.98 0.50 -2.53 16 28 C -0.13 -1.94 7.56 71.98 0.54 -1.39 16 29 C -0.13 -2.72 7.78 71.98 0.56 -2.16 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16 32 H 0.07 0.86 4.45 -2.39 -0.01 0.84 16 33 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 35 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.42 11.36 7.52 -92.71 -0.70 10.66 16 37 H 0.42 14.97 7.95 -92.71 -0.74 14.23 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.06 1.44 7.53 -2.39 -0.02 1.42 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.03 0.87 5.77 -2.39 -0.01 0.85 16 46 H 0.06 0.80 6.84 -2.39 -0.02 0.79 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 0.88 6.86 -2.39 -0.02 0.86 16 49 H 0.04 0.95 7.60 -2.39 -0.02 0.93 16 50 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 51 H 0.07 1.39 5.90 -2.39 -0.01 1.38 16 Total: -1.00 -68.16 404.35 2.29 -65.87 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.47 Total: 31.42 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 6.34 Total: 9.90 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -5.50 Total: -113.75 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.10 Total: -39.28 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.16 2.29 -65.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333401497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.568 kcal (2) G-P(sol) polarization free energy of solvation -68.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds