Wall clock time and date at job start Wed Apr 1 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38667 * 120.41930 * 2 1 4 4 C 1.38632 * 118.42009 * 179.97438 * 3 2 1 5 5 C 1.38225 * 119.16177 * 359.97438 * 4 3 2 6 6 N 1.31857 * 120.76109 * 359.72338 * 5 4 3 7 7 C 1.31883 * 121.72899 * 0.56929 * 6 5 4 8 8 C 1.50697 * 119.62001 * 179.70672 * 7 6 5 9 9 H 1.08996 * 109.47186 * 196.74114 * 8 7 6 10 10 N 1.46498 * 109.47239 * 316.74161 * 8 7 6 11 11 C 1.34774 * 120.00399 * 205.00024 * 10 8 7 12 12 O 1.21348 * 119.99427 * 359.97438 * 11 10 8 13 13 C 1.49444 * 120.00234 * 179.72753 * 11 10 8 14 14 O 1.21348 * 120.00282 * 0.27184 * 13 11 10 15 15 N 1.34773 * 120.00153 * 180.27424 * 13 11 10 16 16 C 1.46503 * 120.00301 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47167 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46886 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00372 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99957 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99906 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00151 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46942 * 89.99696 * 22 20 18 24 24 H 1.48499 * 109.47187 * 209.99564 * 22 20 18 25 25 H 1.48496 * 109.47049 * 329.99912 * 22 20 18 26 26 C 1.53003 * 109.46892 * 76.74439 * 8 7 6 27 27 C 1.52999 * 109.46815 * 299.99711 * 26 8 7 28 28 C 1.52995 * 109.47305 * 60.00057 * 26 8 7 29 29 C 1.52999 * 109.46939 * 180.02562 * 26 8 7 30 30 H 1.09003 * 109.47221 * 264.34490 * 1 2 3 31 31 H 1.08998 * 109.47437 * 24.34391 * 1 2 3 32 32 H 1.08998 * 109.47412 * 144.35009 * 1 2 3 33 33 H 1.08001 * 120.78995 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.41865 * 180.02562 * 4 3 2 35 35 H 1.07997 * 119.61827 * 180.02562 * 5 4 3 36 36 H 0.97006 * 119.99942 * 24.99881 * 10 8 7 37 37 H 0.97006 * 119.99796 * 359.97438 * 15 13 11 38 38 H 1.08990 * 109.47108 * 300.00248 * 16 15 13 39 39 H 1.08998 * 109.46932 * 60.00136 * 16 15 13 40 40 H 1.09004 * 109.47531 * 300.00107 * 17 16 15 41 41 H 1.08998 * 109.47028 * 60.00262 * 17 16 15 42 42 H 0.97001 * 119.99909 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47133 * 60.00271 * 27 26 8 44 44 H 1.09006 * 109.46773 * 180.02562 * 27 26 8 45 45 H 1.09000 * 109.47422 * 300.00214 * 27 26 8 46 46 H 1.08996 * 109.47310 * 59.99995 * 28 26 8 47 47 H 1.08994 * 109.46965 * 180.02562 * 28 26 8 48 48 H 1.09001 * 109.46965 * 299.99926 * 28 26 8 49 49 H 1.09000 * 109.47302 * 59.99784 * 29 26 8 50 50 H 1.08997 * 109.47287 * 180.02562 * 29 26 8 51 51 H 1.08998 * 109.47281 * 300.00022 * 29 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0016 6 7 3.5254 -1.1997 0.0076 7 6 2.2066 -1.1917 0.0016 8 6 1.4539 -2.4972 0.0021 9 1 0.4213 -2.3214 -0.2991 10 7 2.0857 -3.4256 -0.9387 11 6 1.3634 -4.4199 -1.4920 12 8 0.1899 -4.5464 -1.2104 13 6 2.0064 -5.3632 -2.4564 14 8 3.1801 -5.2370 -2.7377 15 7 1.2827 -6.3541 -3.0139 16 6 1.9129 -7.2785 -3.9598 17 6 0.8798 -8.2999 -4.4398 18 6 1.5282 -9.2511 -5.4123 19 1 2.5727 -9.1387 -5.6626 20 6 0.7879 -10.2649 -5.9826 21 7 -0.4841 -10.4021 -5.6774 22 14 1.5914 -11.4436 -7.1886 23 1 2.1499 -12.6039 -6.4491 24 1 0.5786 -11.9198 -8.1647 25 1 2.6844 -10.7442 -7.9106 26 6 1.4794 -3.1000 1.4082 27 6 2.9289 -3.3468 1.8310 28 6 0.8195 -2.1304 2.3908 29 6 0.7157 -4.4258 1.4086 30 1 -0.3634 -0.1013 1.0227 31 1 -0.3634 0.9363 -0.4236 32 1 -0.3634 -0.8350 -0.5989 33 1 1.6890 2.1423 -0.0004 34 1 4.1736 2.0591 0.0010 35 1 5.3046 -0.1287 0.0025 36 1 3.0239 -3.3246 -1.1635 37 1 0.3446 -6.4553 -2.7889 38 1 2.2958 -6.7197 -4.8136 39 1 2.7350 -7.7978 -3.4673 40 1 0.4972 -8.8588 -3.5857 41 1 0.0574 -7.7809 -4.9322 42 1 -1.0050 -11.1151 -6.0789 43 1 3.4734 -2.4025 1.8306 44 1 2.9471 -3.7767 2.8326 45 1 3.3990 -4.0375 1.1310 46 1 -0.2131 -1.9546 2.0895 47 1 0.8381 -2.5597 3.3925 48 1 1.3640 -1.1861 2.3903 49 1 1.1862 -5.1163 0.7087 50 1 0.7335 -4.8550 2.4104 51 1 -0.3169 -4.2504 1.1072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333401499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:55 Heat of formation + Delta-G solvation = -50.361762 kcal Electronic energy + Delta-G solvation = -31112.345441 eV Core-core repulsion = 27011.314811 eV Total energy + Delta-G solvation = -4101.030630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.46336 -40.21758 -38.60246 -37.19504 -35.15413 -34.14420 -33.81652 -32.82828 -32.23654 -29.78929 -28.18361 -27.51787 -27.28650 -26.89844 -25.36064 -23.61821 -22.65631 -22.20264 -21.00039 -20.14259 -19.11780 -18.43048 -17.22730 -16.83978 -16.58239 -16.30296 -16.02639 -15.54525 -15.29464 -14.99034 -14.64440 -14.52273 -14.40606 -14.23171 -13.70926 -13.63900 -13.44823 -13.32994 -13.14745 -13.06764 -12.85287 -12.81084 -12.30841 -12.25693 -12.14671 -11.75493 -11.57640 -11.48567 -11.35769 -11.20037 -11.04607 -10.89639 -10.81467 -10.65086 -10.37249 -10.08482 -9.80653 -9.75755 -9.43097 -9.30257 -9.11605 -9.06562 -8.65317 -8.39675 -6.08685 -4.12121 0.66172 0.87959 1.67658 2.59011 3.30162 3.35986 3.36580 3.40324 3.48723 3.77741 3.95595 4.22958 4.39058 4.42054 4.50484 4.55270 4.63774 4.72053 4.78778 4.86997 5.00355 5.11080 5.17373 5.23486 5.26644 5.28175 5.38613 5.45803 5.57472 5.65343 5.68885 5.74398 5.77923 5.84856 5.88252 5.95973 6.00333 6.21507 6.22706 6.27092 6.27155 6.30285 6.37998 6.63951 6.73329 7.17033 7.50208 7.59380 7.60191 7.74471 7.89066 7.99879 8.24469 8.39157 8.93521 9.52627 11.02793 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.002105 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.403084 B =13297.262729 C =13735.299239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C -0.076 4.076 4 C -0.168 4.168 5 C 0.095 3.905 6 N -0.466 5.466 7 C 0.123 3.877 8 C 0.203 3.797 9 H 0.110 0.890 10 N -0.690 5.690 11 C 0.508 3.492 12 O -0.518 6.518 13 C 0.496 3.504 14 O -0.531 6.531 15 N -0.687 5.687 16 C 0.119 3.881 17 C 0.011 3.989 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.073 4.073 27 C -0.140 4.140 28 C -0.140 4.140 29 C -0.135 4.135 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.419 0.581 37 H 0.410 0.590 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.524 25.874 17.520 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.188 4.188 5 C -0.062 4.062 6 N -0.174 5.174 7 C -0.015 4.015 8 C 0.097 3.903 9 H 0.127 0.873 10 N -0.344 5.344 11 C 0.290 3.710 12 O -0.393 6.393 13 C 0.276 3.724 14 O -0.409 6.409 15 N -0.338 5.338 16 C -0.003 4.003 17 C -0.026 4.026 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.074 4.074 27 C -0.197 4.197 28 C -0.198 4.198 29 C -0.192 4.192 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.257 0.743 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.070 0.930 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.808 24.926 17.449 30.664 hybrid contribution 0.059 0.239 -0.661 0.705 sum 3.867 25.165 16.787 30.497 Atomic orbital electron populations 1.20963 0.90081 1.03584 1.03230 1.20642 0.97670 0.93231 1.00756 1.21483 0.94194 0.97940 0.96599 1.22165 0.95258 0.99741 1.01621 1.22767 1.00416 0.87486 0.95502 1.67427 1.07280 1.31598 1.11143 1.20956 0.90027 0.93968 0.96524 1.20068 0.96591 0.83906 0.89714 0.87268 1.45702 1.15501 1.29165 1.44067 1.20397 0.86800 0.82130 0.81705 1.90748 1.15621 1.71869 1.61085 1.19982 0.86984 0.82809 0.82653 1.90738 1.15632 1.72582 1.61952 1.46213 1.14942 1.28974 1.43627 1.21919 0.97853 0.90328 0.90161 1.19351 0.93740 0.92662 0.96859 1.21017 0.96790 1.12833 1.25488 0.92180 1.25006 0.94843 0.97642 0.96810 1.69963 1.06912 1.32512 1.43707 0.86499 0.79082 0.81078 0.80814 1.20547 1.21166 1.19735 1.20914 0.97190 0.96401 0.92931 1.21895 0.94627 1.02508 1.00648 1.21914 1.00369 0.98580 0.98942 1.21932 1.00646 0.95387 1.01272 0.90207 0.91051 0.90464 0.84703 0.84723 0.82507 0.74316 0.75422 0.91941 0.91911 0.95669 0.95681 0.92794 0.91665 0.93135 0.92226 0.92202 0.92111 0.92892 0.92534 0.92975 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.06 36.01 0.33 -0.43 16 2 C -0.12 -0.95 5.18 -104.48 -0.54 -1.49 16 3 C -0.08 -0.49 9.84 -39.28 -0.39 -0.88 16 4 C -0.17 -1.05 10.11 -39.44 -0.40 -1.45 16 5 C 0.10 0.74 11.18 -17.55 -0.20 0.54 16 6 N -0.47 -4.63 7.37 -9.47 -0.07 -4.70 16 7 C 0.12 1.19 4.34 -82.59 -0.36 0.84 16 8 C 0.20 2.16 1.62 -69.08 -0.11 2.05 16 9 H 0.11 1.18 5.07 -51.93 -0.26 0.92 16 10 N -0.69 -8.89 4.17 -55.37 -0.23 -9.12 16 11 C 0.51 7.72 6.25 -11.59 -0.07 7.65 16 12 O -0.52 -8.24 13.60 5.50 0.07 -8.16 16 13 C 0.50 8.81 7.89 -11.59 -0.09 8.72 16 14 O -0.53 -10.51 16.48 5.50 0.09 -10.42 16 15 N -0.69 -12.70 5.55 -60.74 -0.34 -13.04 16 16 C 0.12 2.53 5.61 -4.04 -0.02 2.51 16 17 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 18 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.81 -0.10 1.56 16 21 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.07 -0.73 0.62 -154.51 -0.10 -0.82 16 27 C -0.14 -1.44 7.79 37.16 0.29 -1.15 16 28 C -0.14 -1.11 7.31 37.16 0.27 -0.84 16 29 C -0.14 -1.55 7.00 37.16 0.26 -1.29 16 30 H 0.08 0.41 6.86 -51.93 -0.36 0.06 16 31 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 32 H 0.08 0.55 6.19 -51.93 -0.32 0.23 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.42 5.59 7.47 -40.82 -0.30 5.28 16 37 H 0.41 7.17 7.95 -40.82 -0.32 6.85 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.06 0.67 5.97 -51.93 -0.31 0.36 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 46 H 0.06 0.42 7.34 -51.93 -0.38 0.04 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.41 6.77 -51.93 -0.35 0.06 16 49 H 0.06 0.77 5.78 -51.93 -0.30 0.47 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -31.62 404.57 -8.23 -39.85 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.89 Total: 7.71 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.68 Total: 0.89 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.10 Total: -52.34 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.17 Total: -18.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.62 -8.23 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333401499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.512 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds