Wall clock time and date at job start Wed Apr 1 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38667 * 120.41930 * 2 1 4 4 C 1.38632 * 118.42009 * 179.97438 * 3 2 1 5 5 C 1.38225 * 119.16177 * 359.97438 * 4 3 2 6 6 N 1.31857 * 120.76109 * 359.72338 * 5 4 3 7 7 C 1.31883 * 121.72899 * 0.56929 * 6 5 4 8 8 C 1.50697 * 119.62001 * 179.70672 * 7 6 5 9 9 H 1.08996 * 109.47186 * 196.74114 * 8 7 6 10 10 N 1.46498 * 109.47239 * 316.74161 * 8 7 6 11 11 C 1.34774 * 120.00399 * 205.00024 * 10 8 7 12 12 O 1.21348 * 119.99427 * 359.97438 * 11 10 8 13 13 C 1.49444 * 120.00234 * 179.72753 * 11 10 8 14 14 O 1.21348 * 120.00282 * 0.27184 * 13 11 10 15 15 N 1.34773 * 120.00153 * 180.27424 * 13 11 10 16 16 C 1.46503 * 120.00301 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47167 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46886 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00372 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99957 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99906 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00151 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46942 * 89.99696 * 22 20 18 24 24 H 1.48499 * 109.47187 * 209.99564 * 22 20 18 25 25 H 1.48496 * 109.47049 * 329.99912 * 22 20 18 26 26 C 1.53003 * 109.46892 * 76.74439 * 8 7 6 27 27 C 1.52999 * 109.46815 * 299.99711 * 26 8 7 28 28 C 1.52995 * 109.47305 * 60.00057 * 26 8 7 29 29 C 1.52999 * 109.46939 * 180.02562 * 26 8 7 30 30 H 1.09003 * 109.47221 * 264.34490 * 1 2 3 31 31 H 1.08998 * 109.47437 * 24.34391 * 1 2 3 32 32 H 1.08998 * 109.47412 * 144.35009 * 1 2 3 33 33 H 1.08001 * 120.78995 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.41865 * 180.02562 * 4 3 2 35 35 H 1.07997 * 119.61827 * 180.02562 * 5 4 3 36 36 H 0.97006 * 119.99942 * 24.99881 * 10 8 7 37 37 H 0.97006 * 119.99796 * 359.97438 * 15 13 11 38 38 H 1.08990 * 109.47108 * 300.00248 * 16 15 13 39 39 H 1.08998 * 109.46932 * 60.00136 * 16 15 13 40 40 H 1.09004 * 109.47531 * 300.00107 * 17 16 15 41 41 H 1.08998 * 109.47028 * 60.00262 * 17 16 15 42 42 H 0.97001 * 119.99909 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47133 * 60.00271 * 27 26 8 44 44 H 1.09006 * 109.46773 * 180.02562 * 27 26 8 45 45 H 1.09000 * 109.47422 * 300.00214 * 27 26 8 46 46 H 1.08996 * 109.47310 * 59.99995 * 28 26 8 47 47 H 1.08994 * 109.46965 * 180.02562 * 28 26 8 48 48 H 1.09001 * 109.46965 * 299.99926 * 28 26 8 49 49 H 1.09000 * 109.47302 * 59.99784 * 29 26 8 50 50 H 1.08997 * 109.47287 * 180.02562 * 29 26 8 51 51 H 1.08998 * 109.47281 * 300.00022 * 29 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0016 6 7 3.5254 -1.1997 0.0076 7 6 2.2066 -1.1917 0.0016 8 6 1.4539 -2.4972 0.0021 9 1 0.4213 -2.3214 -0.2991 10 7 2.0857 -3.4256 -0.9387 11 6 1.3634 -4.4199 -1.4920 12 8 0.1899 -4.5464 -1.2104 13 6 2.0064 -5.3632 -2.4564 14 8 3.1801 -5.2370 -2.7377 15 7 1.2827 -6.3541 -3.0139 16 6 1.9129 -7.2785 -3.9598 17 6 0.8798 -8.2999 -4.4398 18 6 1.5282 -9.2511 -5.4123 19 1 2.5727 -9.1387 -5.6626 20 6 0.7879 -10.2649 -5.9826 21 7 -0.4841 -10.4021 -5.6774 22 14 1.5914 -11.4436 -7.1886 23 1 2.1499 -12.6039 -6.4491 24 1 0.5786 -11.9198 -8.1647 25 1 2.6844 -10.7442 -7.9106 26 6 1.4794 -3.1000 1.4082 27 6 2.9289 -3.3468 1.8310 28 6 0.8195 -2.1304 2.3908 29 6 0.7157 -4.4258 1.4086 30 1 -0.3634 -0.1013 1.0227 31 1 -0.3634 0.9363 -0.4236 32 1 -0.3634 -0.8350 -0.5989 33 1 1.6890 2.1423 -0.0004 34 1 4.1736 2.0591 0.0010 35 1 5.3046 -0.1287 0.0025 36 1 3.0239 -3.3246 -1.1635 37 1 0.3446 -6.4553 -2.7889 38 1 2.2958 -6.7197 -4.8136 39 1 2.7350 -7.7978 -3.4673 40 1 0.4972 -8.8588 -3.5857 41 1 0.0574 -7.7809 -4.9322 42 1 -1.0050 -11.1151 -6.0789 43 1 3.4734 -2.4025 1.8306 44 1 2.9471 -3.7767 2.8326 45 1 3.3990 -4.0375 1.1310 46 1 -0.2131 -1.9546 2.0895 47 1 0.8381 -2.5597 3.3925 48 1 1.3640 -1.1861 2.3903 49 1 1.1862 -5.1163 0.7087 50 1 0.7335 -4.8550 2.4104 51 1 -0.3169 -4.2504 1.1072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333401499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:17:54 Heat of formation + Delta-G solvation = -70.555093 kcal Electronic energy + Delta-G solvation = -31113.221089 eV Core-core repulsion = 27011.314811 eV Total energy + Delta-G solvation = -4101.906278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32401 -41.30433 -39.83874 -38.19060 -36.83943 -35.09134 -34.69361 -34.60017 -32.90179 -31.70105 -28.90245 -28.31101 -28.14789 -27.71261 -26.99414 -24.96325 -23.48287 -22.82061 -22.78431 -21.45950 -20.06534 -19.60779 -18.59675 -18.08066 -17.56456 -17.45907 -17.24091 -16.59038 -16.51397 -16.28979 -16.08884 -15.63418 -15.50665 -15.03073 -14.97373 -14.75875 -14.37783 -14.30338 -14.18595 -13.86584 -13.82908 -13.68416 -13.36222 -13.26942 -13.10621 -12.95392 -12.82086 -12.72175 -12.56639 -12.53134 -12.32350 -12.28974 -12.21110 -11.71971 -11.69528 -11.59980 -11.44172 -10.72737 -10.62293 -10.61772 -10.44825 -10.23180 -10.12702 -9.72777 -8.23945 -6.35132 0.08959 0.32143 0.35897 1.32439 1.43141 1.43265 1.54937 2.11400 2.39378 2.64587 2.83342 3.10837 3.11567 3.43067 3.61374 3.72392 3.89235 3.97529 4.03157 4.10731 4.15671 4.37879 4.39743 4.43371 4.51023 4.59644 4.63259 4.73411 4.76682 4.78157 4.79569 4.83395 4.90412 4.98102 5.00543 5.06006 5.07322 5.16102 5.20254 5.26115 5.31680 5.35745 5.40754 5.42705 5.46933 5.54006 5.74968 5.80211 5.93896 6.12426 6.35124 6.69514 6.78861 6.91963 7.03221 7.34248 8.88084 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.002105 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.403084 B =13297.262729 C =13735.299239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.125 4.125 3 C -0.079 4.079 4 C -0.159 4.159 5 C 0.079 3.921 6 N -0.492 5.492 7 C 0.102 3.898 8 C 0.201 3.799 9 H 0.108 0.892 10 N -0.678 5.678 11 C 0.516 3.484 12 O -0.526 6.526 13 C 0.497 3.503 14 O -0.552 6.552 15 N -0.686 5.686 16 C 0.138 3.862 17 C 0.020 3.980 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.264 1.264 26 C -0.070 4.070 27 C -0.133 4.133 28 C -0.133 4.133 29 C -0.132 4.132 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.417 0.583 37 H 0.415 0.585 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.266 0.734 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.030 0.970 50 H 0.061 0.939 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 27.947 18.141 33.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.179 4.179 5 C -0.078 4.078 6 N -0.201 5.201 7 C -0.035 4.035 8 C 0.097 3.903 9 H 0.126 0.874 10 N -0.330 5.330 11 C 0.296 3.704 12 O -0.403 6.403 13 C 0.278 3.722 14 O -0.430 6.430 15 N -0.338 5.338 16 C 0.015 3.985 17 C -0.017 4.017 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.188 1.188 26 C -0.071 4.071 27 C -0.190 4.190 28 C -0.191 4.191 29 C -0.189 4.189 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.254 0.746 37 H 0.252 0.748 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.049 0.951 50 H 0.080 0.920 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.389 27.032 18.097 32.825 hybrid contribution -0.082 -0.306 -0.810 0.870 sum 4.307 26.725 17.287 32.119 Atomic orbital electron populations 1.21001 0.89120 1.03924 1.03797 1.20839 0.98479 0.93123 1.00251 1.21857 0.94473 0.98477 0.95617 1.22503 0.95521 1.00197 0.99649 1.23157 1.01285 0.87675 0.95705 1.67340 1.07625 1.33066 1.12037 1.20792 0.90220 0.93786 0.98750 1.20228 0.96583 0.84204 0.89299 0.87419 1.45719 1.15194 1.28489 1.43618 1.19822 0.86632 0.82336 0.81600 1.90748 1.15803 1.72225 1.61541 1.20418 0.86648 0.82626 0.82499 1.90720 1.16555 1.73094 1.62662 1.46039 1.15220 1.29028 1.43490 1.21474 0.96536 0.89906 0.90567 1.19164 0.93951 0.92918 0.95710 1.21441 0.97209 1.13595 1.26104 0.91815 1.25922 0.95378 0.99438 0.98650 1.70079 1.08331 1.33366 1.44916 0.85402 0.78255 0.78728 0.78402 1.19759 1.20645 1.18835 1.20895 0.96911 0.96123 0.93207 1.21824 0.94733 1.02058 1.00413 1.21852 1.00678 0.98057 0.98499 1.21888 1.00159 0.95804 1.01082 0.89123 0.89363 0.91803 0.81978 0.81865 0.80979 0.74555 0.74832 0.92186 0.92198 0.97371 0.97333 0.92542 0.91502 0.92439 0.94233 0.91260 0.91411 0.92467 0.95061 0.91955 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.06 71.24 0.65 -0.62 16 2 C -0.12 -1.73 5.18 -19.77 -0.10 -1.83 16 3 C -0.08 -0.79 9.84 22.47 0.22 -0.57 16 4 C -0.16 -1.53 10.11 22.36 0.23 -1.31 16 5 C 0.08 1.10 11.18 84.69 0.95 2.04 16 6 N -0.49 -9.42 7.37 -183.89 -1.35 -10.78 16 7 C 0.10 1.88 4.34 42.54 0.18 2.07 16 8 C 0.20 4.25 1.62 44.25 0.07 4.32 16 9 H 0.11 2.31 5.07 -2.39 -0.01 2.30 16 10 N -0.68 -17.79 4.17 -447.45 -1.87 -19.66 16 11 C 0.52 16.03 6.25 87.27 0.54 16.57 16 12 O -0.53 -17.07 13.60 -3.24 -0.04 -17.11 16 13 C 0.50 18.06 7.89 87.27 0.69 18.74 16 14 O -0.55 -22.20 16.48 -3.24 -0.05 -22.25 16 15 N -0.69 -26.05 5.55 -464.43 -2.58 -28.63 16 16 C 0.14 5.98 5.61 86.38 0.48 6.47 16 17 C 0.02 1.03 5.09 29.85 0.15 1.18 16 18 C -0.55 -30.53 9.11 25.60 0.23 -30.30 16 19 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 20 C 0.00 0.27 5.46 84.65 0.46 0.74 16 21 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 22 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.07 -1.36 0.62 -52.18 -0.03 -1.39 16 27 C -0.13 -2.71 7.79 71.98 0.56 -2.15 16 28 C -0.13 -1.90 7.31 71.98 0.53 -1.38 16 29 C -0.13 -3.03 7.00 71.98 0.50 -2.52 16 30 H 0.09 0.73 6.86 -2.39 -0.02 0.72 16 31 H 0.09 0.61 8.06 -2.39 -0.02 0.59 16 32 H 0.06 0.85 6.19 -2.39 -0.01 0.84 16 33 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 34 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.42 11.42 7.47 -92.70 -0.69 10.72 16 37 H 0.42 14.99 7.95 -92.70 -0.74 14.25 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.07 1.35 5.97 -2.39 -0.01 1.33 16 44 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.04 0.95 7.60 -2.39 -0.02 0.93 16 46 H 0.07 0.86 7.34 -2.39 -0.02 0.84 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 0.79 6.77 -2.39 -0.02 0.77 16 49 H 0.03 0.86 5.78 -2.39 -0.01 0.85 16 50 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.06 1.44 7.53 -2.39 -0.02 1.42 16 Total: -1.00 -68.32 404.57 2.26 -66.06 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.47 Total: 31.35 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.32 Total: 10.07 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -5.51 Total: -113.97 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.10 Total: -39.36 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.32 2.26 -66.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333401499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.499 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds