Wall clock time and date at job start Wed Apr 1 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35421 * 116.99988 * 2 1 4 4 N 1.32237 * 119.80079 * 359.97438 * 3 2 1 5 5 C 1.31882 * 121.79964 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.40539 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18783 * 0.26870 * 5 4 3 8 8 C 1.38339 * 119.45449 * 359.45807 * 7 5 4 9 9 C 1.39987 * 118.34710 * 0.53178 * 8 7 5 10 10 C 1.47530 * 120.59257 * 179.70943 * 9 8 7 11 11 O 1.21588 * 119.99730 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00135 * 0.02562 * 10 9 8 13 13 C 1.46494 * 119.99769 * 174.79221 * 12 10 9 14 14 H 1.08993 * 109.47643 * 4.80253 * 13 12 10 15 15 C 1.53006 * 109.47232 * 124.80404 * 13 12 10 16 16 N 1.46492 * 109.46977 * 304.99708 * 15 13 12 17 17 C 1.36937 * 120.00243 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99698 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00361 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00140 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00020 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47566 * 89.99471 * 21 19 17 23 23 H 1.48496 * 109.47053 * 209.99811 * 21 19 17 24 24 H 1.48504 * 109.47117 * 329.99403 * 21 19 17 25 25 C 1.53007 * 109.47160 * 244.80044 * 13 12 10 26 26 C 1.54260 * 110.03656 * 181.73864 * 25 13 12 27 27 C 1.54883 * 104.19735 * 217.10582 * 26 25 13 28 28 C 1.54893 * 102.74733 * 37.94544 * 27 26 25 29 29 C 1.53876 * 110.03013 * 64.57099 * 25 13 12 30 30 H 1.09004 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47391 * 300.00258 * 1 2 3 32 32 H 1.09000 * 109.47106 * 60.00484 * 1 2 3 33 33 H 1.09000 * 109.47315 * 89.99692 * 6 5 4 34 34 H 1.09003 * 109.47238 * 329.99590 * 6 5 4 35 35 H 1.09002 * 109.47186 * 209.99301 * 6 5 4 36 36 H 1.07996 * 120.27018 * 179.73219 * 7 5 4 37 37 H 1.08001 * 120.82354 * 180.26619 * 8 7 5 38 38 H 0.96994 * 119.99761 * 354.78822 * 12 10 9 39 39 H 1.08995 * 109.46990 * 64.99668 * 15 13 12 40 40 H 1.08999 * 109.47071 * 184.99591 * 15 13 12 41 41 H 0.97003 * 119.99788 * 359.97438 * 16 15 13 42 42 H 0.96994 * 120.00061 * 180.02562 * 20 19 17 43 43 H 1.09003 * 110.01455 * 303.19034 * 25 13 12 44 44 H 1.08996 * 110.48706 * 335.79125 * 26 25 13 45 45 H 1.09005 * 110.48590 * 98.42619 * 26 25 13 46 46 H 1.09004 * 110.75790 * 279.62781 * 27 26 25 47 47 H 1.08997 * 110.91631 * 156.33032 * 27 26 25 48 48 H 1.09008 * 110.48295 * 203.37577 * 28 27 26 49 49 H 1.08993 * 110.59622 * 80.79436 * 28 27 26 50 50 H 1.08991 * 110.03650 * 238.57297 * 29 25 13 51 51 H 1.09001 * 110.03164 * 0.02562 * 29 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3197 2.3131 -0.0005 5 6 1.8771 3.5084 0.0000 6 6 1.0000 4.7338 -0.0012 7 6 3.2526 3.6575 -0.0045 8 6 4.0587 2.5333 0.0018 9 6 3.4449 1.2752 0.0012 10 6 4.2569 0.0435 0.0013 11 8 3.7124 -1.0436 0.0002 12 7 5.6024 0.1234 0.0025 13 6 6.4082 -1.0946 0.1178 14 1 5.7536 -1.9659 0.1061 15 6 7.3838 -1.1738 -1.0582 16 7 6.6398 -1.0828 -2.3168 17 6 7.3069 -1.1319 -3.5117 18 1 8.3817 -1.2375 -3.5262 19 6 6.6018 -1.0462 -4.7044 20 7 7.2431 -1.0930 -5.8528 21 14 4.7430 -0.8629 -4.6794 22 1 4.3880 0.5787 -4.6538 23 1 4.1672 -1.4931 -5.8945 24 1 4.1962 -1.5289 -3.4700 25 6 7.1935 -1.0642 1.4306 26 6 8.0805 -2.3211 1.5452 27 6 8.0265 -2.6884 3.0488 28 6 6.5563 -2.3770 3.4241 29 6 6.2245 -1.0997 2.6254 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7872 5.0294 1.0261 34 1 0.0654 4.5112 -0.5162 35 1 1.5129 5.5472 -0.5145 36 1 3.6933 4.6434 -0.0084 37 1 5.1349 2.6240 0.0028 38 1 6.0369 0.9872 -0.0730 39 1 8.0952 -0.3504 -0.9963 40 1 7.9210 -2.1216 -1.0214 41 1 5.6744 -0.9883 -2.3038 42 1 6.7505 -1.0326 -6.6862 43 1 7.8095 -0.1660 1.4762 44 1 7.6742 -3.1312 0.9397 45 1 9.1034 -2.0948 1.2442 46 1 8.7121 -2.0656 3.6235 47 1 8.2481 -3.7449 3.1995 48 1 6.4670 -2.1915 4.4946 49 1 5.9023 -3.1955 3.1239 50 1 6.3708 -0.2194 3.2511 51 1 5.1948 -1.1390 2.2699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484007712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:10 Heat of formation + Delta-G solvation = -35.308423 kcal Electronic energy + Delta-G solvation = -31910.631647 eV Core-core repulsion = 27810.253779 eV Total energy + Delta-G solvation = -4100.377868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.04780 -39.61991 -38.12120 -37.91866 -35.40672 -33.82134 -33.15206 -31.93762 -31.26035 -29.94940 -28.68591 -28.50369 -27.04570 -26.34221 -23.70963 -23.02922 -22.73214 -21.42487 -20.53019 -20.32913 -19.74271 -18.36662 -17.77193 -17.24006 -17.03305 -16.18112 -15.96606 -15.30207 -15.27302 -14.79674 -14.54223 -14.38219 -14.34718 -14.23324 -14.11896 -13.62834 -13.28944 -13.13439 -12.92140 -12.81334 -12.60924 -12.53119 -12.45098 -12.17305 -11.81044 -11.55275 -11.43873 -11.16462 -11.07466 -11.03928 -10.95593 -10.82148 -10.61683 -10.44284 -10.38515 -10.09126 -10.05240 -10.02632 -9.56147 -9.50910 -8.86850 -8.73066 -8.50537 -7.18267 -5.73876 -3.08164 0.56448 1.10390 2.96371 2.98507 3.30840 3.42157 3.50078 3.55867 3.76346 3.94601 4.43897 4.60343 4.64796 4.68400 4.70369 4.75812 4.83942 4.97892 5.14763 5.18979 5.23575 5.24122 5.25512 5.26986 5.49498 5.50760 5.53450 5.54233 5.57655 5.65626 5.69152 5.69341 5.72003 5.82915 5.86678 5.87375 5.90491 5.96871 6.08731 6.16154 6.19188 6.30542 6.36589 6.42676 6.48806 6.63077 6.90330 7.14585 7.59340 7.77006 8.02846 8.45158 8.49747 9.25990 9.99100 10.19216 11.44433 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006763 B = 0.004952 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4139.259077 B = 5653.236036 C = 8296.599239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.268 6.268 3 C 0.376 3.624 4 N -0.548 5.548 5 C 0.189 3.811 6 C -0.107 4.107 7 C -0.220 4.220 8 C -0.003 4.003 9 C -0.212 4.212 10 C 0.564 3.436 11 O -0.517 6.517 12 N -0.712 5.712 13 C 0.135 3.865 14 H 0.102 0.898 15 C 0.148 3.852 16 N -0.753 5.753 17 C -0.242 4.242 18 H 0.090 0.910 19 C 0.008 3.992 20 N -0.934 5.934 21 Si 0.873 3.127 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.271 1.271 25 C -0.096 4.096 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.118 4.118 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.396 0.604 39 H 0.028 0.972 40 H 0.040 0.960 41 H 0.364 0.636 42 H 0.259 0.741 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.008 9.421 20.438 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.172 6.172 3 C 0.196 3.804 4 N -0.273 5.273 5 C 0.051 3.949 6 C -0.164 4.164 7 C -0.240 4.240 8 C -0.029 4.029 9 C -0.218 4.218 10 C 0.350 3.650 11 O -0.393 6.393 12 N -0.363 5.363 13 C 0.030 3.970 14 H 0.120 0.880 15 C 0.020 3.980 16 N -0.399 5.399 17 C -0.372 4.372 18 H 0.108 0.892 19 C -0.188 4.188 20 N -0.582 5.582 21 Si 0.703 3.297 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.197 1.197 25 C -0.116 4.116 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.156 4.156 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.231 0.769 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.197 0.803 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.033 8.211 20.275 23.667 hybrid contribution -0.454 0.844 -0.339 1.016 sum -9.487 9.055 19.936 23.863 Atomic orbital electron populations 1.22943 0.77728 1.03262 1.02114 1.86560 1.22178 1.22891 1.85557 1.19806 0.88151 0.84914 0.87527 1.67258 1.40327 0.98210 1.21513 1.21157 0.92193 0.91958 0.89587 1.20809 0.99416 0.92822 1.03399 1.21716 0.93815 0.99956 1.08562 1.21658 1.00736 0.90478 0.90024 1.20079 0.91649 0.95260 1.14861 1.17709 0.82246 0.88181 0.76821 1.90827 1.71503 1.28219 1.48711 1.45725 1.05415 1.10514 1.74654 1.21540 0.92949 0.88346 0.94125 0.87969 1.21001 0.93040 0.99234 0.84729 1.42683 1.05417 1.90168 1.01617 1.19048 0.93360 1.42385 0.82380 0.89177 1.24600 0.96951 1.02013 0.95188 1.69695 1.34401 1.57541 0.96596 0.86689 0.87709 0.77929 0.77325 1.21335 1.21635 1.19722 1.22082 0.96357 0.99110 0.94024 1.22402 0.99641 0.97292 0.96154 1.22486 0.96480 1.00809 0.96349 1.22350 0.96656 0.98004 0.99174 1.22165 0.99896 0.97475 0.96047 0.88391 0.92386 0.92300 0.89886 0.90221 0.90067 0.83901 0.83589 0.76907 0.95432 0.94221 0.80306 0.93128 0.90759 0.90849 0.91220 0.91818 0.91775 0.92260 0.91674 0.92397 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.38 101.05 1.05 1.47 16 2 O -0.27 -4.54 8.58 -39.73 -0.34 -4.88 16 3 C 0.38 6.07 7.51 -16.61 -0.12 5.95 16 4 N -0.55 -7.60 9.11 -9.21 -0.08 -7.69 16 5 C 0.19 2.10 6.78 -82.53 -0.56 1.54 16 6 C -0.11 -0.77 10.16 36.00 0.37 -0.40 16 7 C -0.22 -2.24 9.71 -39.50 -0.38 -2.62 16 8 C 0.00 -0.04 9.64 -38.89 -0.37 -0.41 16 9 C -0.21 -3.32 5.90 -104.69 -0.62 -3.93 16 10 C 0.56 9.98 7.07 -12.47 -0.09 9.90 16 11 O -0.52 -10.98 14.51 -16.48 -0.24 -11.22 16 12 N -0.71 -10.95 3.98 -54.85 -0.22 -11.17 16 13 C 0.14 2.16 1.71 -67.93 -0.12 2.04 16 14 H 0.10 1.91 6.91 -51.93 -0.36 1.55 16 15 C 0.15 2.83 5.59 -4.04 -0.02 2.81 16 16 N -0.75 -18.56 5.24 -59.91 -0.31 -18.87 16 17 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 18 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 19 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -30.04 13.97 55.49 0.78 -29.26 16 21 Si 0.87 23.79 27.74 -169.99 -4.71 19.07 16 22 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 23 H -0.29 -7.91 7.11 56.52 0.40 -7.51 16 24 H -0.27 -7.44 6.52 56.52 0.37 -7.08 16 25 C -0.10 -1.18 2.71 -89.50 -0.24 -1.43 16 26 C -0.12 -1.37 5.31 -25.08 -0.13 -1.50 16 27 C -0.12 -1.25 6.91 -24.74 -0.17 -1.42 16 28 C -0.12 -1.34 6.83 -25.07 -0.17 -1.51 16 29 C -0.12 -1.41 6.25 -25.61 -0.16 -1.57 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.15 1.32 6.53 -52.49 -0.34 0.98 16 38 H 0.40 5.09 6.95 -40.82 -0.28 4.80 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.77 7.15 -51.93 -0.37 0.40 16 41 H 0.36 9.30 5.18 -40.82 -0.21 9.09 16 42 H 0.26 7.95 8.31 -40.82 -0.34 7.62 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.95 7.50 -51.93 -0.39 0.56 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.96 6.88 -51.93 -0.36 0.60 16 LS Contribution 407.65 15.07 6.14 6.14 Total: -1.00 -37.03 407.65 -9.24 -46.27 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -8.24 Total: 9.71 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.00 Total: 1.89 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: 0.16 Total: -66.99 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.58 Total: -16.10 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.71 Total: 19.07 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.03 -9.24 -46.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484007712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.962 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds