Wall clock time and date at job start Wed Apr 1 2020 04:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35421 * 116.99988 * 2 1 4 4 N 1.32237 * 119.80079 * 359.97438 * 3 2 1 5 5 C 1.31882 * 121.79964 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.40539 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18783 * 0.26870 * 5 4 3 8 8 C 1.38339 * 119.45449 * 359.45807 * 7 5 4 9 9 C 1.39987 * 118.34710 * 0.53178 * 8 7 5 10 10 C 1.47530 * 120.59257 * 179.70943 * 9 8 7 11 11 O 1.21588 * 119.99730 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00135 * 0.02562 * 10 9 8 13 13 C 1.46494 * 119.99769 * 174.79221 * 12 10 9 14 14 H 1.08993 * 109.47643 * 4.80253 * 13 12 10 15 15 C 1.53006 * 109.47232 * 124.80404 * 13 12 10 16 16 N 1.46492 * 109.46977 * 304.99708 * 15 13 12 17 17 C 1.36937 * 120.00243 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99698 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00361 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00140 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00020 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47566 * 89.99471 * 21 19 17 23 23 H 1.48496 * 109.47053 * 209.99811 * 21 19 17 24 24 H 1.48504 * 109.47117 * 329.99403 * 21 19 17 25 25 C 1.53007 * 109.47160 * 244.80044 * 13 12 10 26 26 C 1.54260 * 110.03656 * 181.73864 * 25 13 12 27 27 C 1.54883 * 104.19735 * 217.10582 * 26 25 13 28 28 C 1.54893 * 102.74733 * 37.94544 * 27 26 25 29 29 C 1.53876 * 110.03013 * 64.57099 * 25 13 12 30 30 H 1.09004 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47391 * 300.00258 * 1 2 3 32 32 H 1.09000 * 109.47106 * 60.00484 * 1 2 3 33 33 H 1.09000 * 109.47315 * 89.99692 * 6 5 4 34 34 H 1.09003 * 109.47238 * 329.99590 * 6 5 4 35 35 H 1.09002 * 109.47186 * 209.99301 * 6 5 4 36 36 H 1.07996 * 120.27018 * 179.73219 * 7 5 4 37 37 H 1.08001 * 120.82354 * 180.26619 * 8 7 5 38 38 H 0.96994 * 119.99761 * 354.78822 * 12 10 9 39 39 H 1.08995 * 109.46990 * 64.99668 * 15 13 12 40 40 H 1.08999 * 109.47071 * 184.99591 * 15 13 12 41 41 H 0.97003 * 119.99788 * 359.97438 * 16 15 13 42 42 H 0.96994 * 120.00061 * 180.02562 * 20 19 17 43 43 H 1.09003 * 110.01455 * 303.19034 * 25 13 12 44 44 H 1.08996 * 110.48706 * 335.79125 * 26 25 13 45 45 H 1.09005 * 110.48590 * 98.42619 * 26 25 13 46 46 H 1.09004 * 110.75790 * 279.62781 * 27 26 25 47 47 H 1.08997 * 110.91631 * 156.33032 * 27 26 25 48 48 H 1.09008 * 110.48295 * 203.37577 * 28 27 26 49 49 H 1.08993 * 110.59622 * 80.79436 * 28 27 26 50 50 H 1.08991 * 110.03650 * 238.57297 * 29 25 13 51 51 H 1.09001 * 110.03164 * 0.02562 * 29 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3197 2.3131 -0.0005 5 6 1.8771 3.5084 0.0000 6 6 1.0000 4.7338 -0.0012 7 6 3.2526 3.6575 -0.0045 8 6 4.0587 2.5333 0.0018 9 6 3.4449 1.2752 0.0012 10 6 4.2569 0.0435 0.0013 11 8 3.7124 -1.0436 0.0002 12 7 5.6024 0.1234 0.0025 13 6 6.4082 -1.0946 0.1178 14 1 5.7536 -1.9659 0.1061 15 6 7.3838 -1.1738 -1.0582 16 7 6.6398 -1.0828 -2.3168 17 6 7.3069 -1.1319 -3.5117 18 1 8.3817 -1.2375 -3.5262 19 6 6.6018 -1.0462 -4.7044 20 7 7.2431 -1.0930 -5.8528 21 14 4.7430 -0.8629 -4.6794 22 1 4.3880 0.5787 -4.6538 23 1 4.1672 -1.4931 -5.8945 24 1 4.1962 -1.5289 -3.4700 25 6 7.1935 -1.0642 1.4306 26 6 8.0805 -2.3211 1.5452 27 6 8.0265 -2.6884 3.0488 28 6 6.5563 -2.3770 3.4241 29 6 6.2245 -1.0997 2.6254 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7872 5.0294 1.0261 34 1 0.0654 4.5112 -0.5162 35 1 1.5129 5.5472 -0.5145 36 1 3.6933 4.6434 -0.0084 37 1 5.1349 2.6240 0.0028 38 1 6.0369 0.9872 -0.0730 39 1 8.0952 -0.3504 -0.9963 40 1 7.9210 -2.1216 -1.0214 41 1 5.6744 -0.9883 -2.3038 42 1 6.7505 -1.0326 -6.6862 43 1 7.8095 -0.1660 1.4762 44 1 7.6742 -3.1312 0.9397 45 1 9.1034 -2.0948 1.2442 46 1 8.7121 -2.0656 3.6235 47 1 8.2481 -3.7449 3.1995 48 1 6.4670 -2.1915 4.4946 49 1 5.9023 -3.1955 3.1239 50 1 6.3708 -0.2194 3.2511 51 1 5.1948 -1.1390 2.2699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484007712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:09 Heat of formation + Delta-G solvation = -61.043750 kcal Electronic energy + Delta-G solvation = -31911.747615 eV Core-core repulsion = 27810.253779 eV Total energy + Delta-G solvation = -4101.493836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.08999 -40.81927 -39.14192 -39.04676 -37.00752 -35.39021 -34.34105 -33.22385 -32.80335 -31.29038 -29.59561 -29.38066 -28.11878 -27.73818 -25.09844 -24.18437 -23.93198 -22.89665 -21.79778 -21.31741 -20.80227 -19.88111 -19.34871 -18.46750 -18.08465 -17.25540 -17.06901 -16.77819 -16.50846 -16.11829 -15.97061 -15.50963 -15.42976 -15.31092 -15.23285 -15.01176 -14.81068 -14.33230 -14.13900 -14.09837 -13.82924 -13.58584 -13.36156 -13.26857 -13.07069 -13.05389 -12.75440 -12.69737 -12.27628 -12.24692 -12.09265 -11.93956 -11.91325 -11.83254 -11.69059 -11.45061 -11.41150 -11.19509 -11.04331 -11.01069 -10.68188 -10.03246 -9.51287 -9.32901 -8.09795 -5.39362 -0.42243 0.17324 1.22210 1.27826 1.36074 1.81168 1.99394 2.10618 2.37302 2.70518 3.07266 3.22553 3.41169 3.65363 3.66806 3.74325 3.79831 3.86367 3.94534 4.13909 4.18629 4.28876 4.30717 4.31051 4.37401 4.53230 4.60095 4.60461 4.66120 4.71733 4.74410 4.78274 4.83083 4.85889 4.88812 4.91760 4.95463 5.04043 5.10226 5.11783 5.14999 5.28350 5.32875 5.43477 5.47004 5.52156 5.60679 5.72247 6.14123 6.15945 6.50412 6.69878 7.01962 7.23609 7.80275 7.97168 9.11974 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006763 B = 0.004952 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4139.259077 B = 5653.236036 C = 8296.599239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.351 3.649 4 N -0.559 5.559 5 C 0.181 3.819 6 C -0.104 4.104 7 C -0.209 4.209 8 C -0.001 4.001 9 C -0.246 4.246 10 C 0.561 3.439 11 O -0.566 6.566 12 N -0.702 5.702 13 C 0.147 3.853 14 H 0.069 0.931 15 C 0.145 3.855 16 N -0.759 5.759 17 C -0.222 4.222 18 H 0.071 0.929 19 C -0.048 4.048 20 N -0.975 5.975 21 Si 0.933 3.067 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.086 4.086 26 C -0.121 4.121 27 C -0.115 4.115 28 C -0.125 4.125 29 C -0.113 4.113 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.186 0.814 37 H 0.173 0.827 38 H 0.410 0.590 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.359 0.641 42 H 0.258 0.742 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.077 0.923 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 12.344 22.566 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.208 6.208 3 C 0.172 3.828 4 N -0.285 5.285 5 C 0.044 3.956 6 C -0.161 4.161 7 C -0.228 4.228 8 C -0.026 4.026 9 C -0.253 4.253 10 C 0.349 3.651 11 O -0.445 6.445 12 N -0.354 5.354 13 C 0.042 3.958 14 H 0.087 0.913 15 C 0.018 3.982 16 N -0.404 5.404 17 C -0.353 4.353 18 H 0.089 0.911 19 C -0.240 4.240 20 N -0.627 5.627 21 Si 0.763 3.237 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.106 4.106 26 C -0.159 4.159 27 C -0.152 4.152 28 C -0.162 4.162 29 C -0.151 4.151 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.203 0.797 37 H 0.191 0.809 38 H 0.247 0.753 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.192 0.808 42 H 0.067 0.933 43 H 0.116 0.884 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.584 11.170 22.450 26.504 hybrid contribution -0.566 -0.002 -0.932 1.090 sum -9.150 11.168 21.519 25.914 Atomic orbital electron populations 1.23104 0.76139 1.04353 1.02578 1.86507 1.24094 1.24267 1.85981 1.20072 0.88683 0.85293 0.88774 1.67330 1.40486 0.98624 1.22103 1.22015 0.93686 0.92161 0.87739 1.20954 0.98751 0.91534 1.04869 1.22210 0.93250 1.01207 1.06174 1.22034 1.02297 0.89443 0.88857 1.20115 0.91541 0.95718 1.17880 1.18124 0.82752 0.88440 0.75822 1.90788 1.72421 1.30180 1.51132 1.45626 1.04903 1.10902 1.73948 1.21339 0.91964 0.87697 0.94840 0.91256 1.21236 0.93640 0.99775 0.83509 1.42789 1.05365 1.89965 1.02245 1.19110 0.92687 1.39672 0.83868 0.91071 1.25161 1.00338 1.03391 0.95149 1.69813 1.35762 1.59947 0.97140 0.85748 0.83474 0.78009 0.76495 1.20473 1.21740 1.20771 1.22049 0.96231 1.00503 0.91817 1.22438 0.99800 0.96299 0.97367 1.22458 0.96114 1.01689 0.94986 1.22358 0.96990 0.96875 1.00025 1.22107 0.97933 0.98943 0.96114 0.87067 0.91305 0.92322 0.87999 0.90691 0.87415 0.79655 0.80933 0.75260 0.93491 0.94142 0.80848 0.93290 0.88441 0.92881 0.90145 0.89899 0.91104 0.90498 0.93296 0.90462 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.38 113.37 1.18 2.01 16 2 O -0.30 -10.82 8.58 -66.34 -0.57 -11.39 16 3 C 0.35 11.55 7.51 85.13 0.64 12.19 16 4 N -0.56 -15.15 9.11 -296.07 -2.70 -17.85 16 5 C 0.18 3.57 6.78 42.58 0.29 3.86 16 6 C -0.10 -1.12 10.16 71.24 0.72 -0.39 16 7 C -0.21 -3.48 9.71 22.32 0.22 -3.27 16 8 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 9 C -0.25 -7.69 5.90 -19.91 -0.12 -7.81 16 10 C 0.56 20.34 7.07 86.69 0.61 20.95 16 11 O -0.57 -25.47 14.51 16.82 0.24 -25.23 16 12 N -0.70 -21.30 3.98 -445.71 -1.77 -23.07 16 13 C 0.15 4.68 1.71 45.00 0.08 4.75 16 14 H 0.07 2.72 6.91 -2.39 -0.02 2.70 16 15 C 0.14 5.45 5.59 86.38 0.48 5.94 16 16 N -0.76 -37.45 5.24 -343.46 -1.80 -39.25 16 17 C -0.22 -12.97 10.47 84.03 0.88 -12.09 16 18 H 0.07 4.39 8.06 -2.91 -0.02 4.37 16 19 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 20 N -0.98 -63.61 13.97 21.65 0.30 -63.31 16 21 Si 0.93 50.35 27.74 68.60 1.90 52.26 16 22 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.29 -15.61 7.11 99.48 0.71 -14.91 16 24 H -0.28 -15.50 6.52 99.48 0.65 -14.85 16 25 C -0.09 -1.99 2.71 -10.07 -0.03 -2.02 16 26 C -0.12 -2.66 5.31 31.66 0.17 -2.49 16 27 C -0.12 -2.05 6.91 31.88 0.22 -1.83 16 28 C -0.12 -2.52 6.83 31.67 0.22 -2.31 16 29 C -0.11 -2.56 6.25 31.32 0.20 -2.37 16 30 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.62 8.07 -2.39 -0.02 0.60 16 36 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.17 2.54 6.53 -2.91 -0.02 2.52 16 38 H 0.41 9.79 6.95 -92.71 -0.64 9.14 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.55 7.15 -2.39 -0.02 1.53 16 41 H 0.36 18.51 5.18 -92.71 -0.48 18.03 16 42 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 1.38 7.50 -2.39 -0.02 1.36 16 45 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.04 1.08 6.88 -2.39 -0.02 1.07 16 Total: -1.00 -84.18 407.65 1.81 -82.37 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.24 Total: 32.64 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.44 Total: 12.83 kcal Atomic # 7 Polarization: -137.51 SS G_CDS: -5.97 Total: -143.48 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.32 Total: -36.62 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 1.90 Total: 52.26 kcal Total: -84.18 1.81 -82.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484007712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.323 kcal (2) G-P(sol) polarization free energy of solvation -84.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds