Wall clock time and date at job start Wed Apr 1 2020 06:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.52270 * 2 1 4 4 N 1.46502 * 109.47394 * 60.07913 * 3 2 1 5 5 C 1.34774 * 120.00545 * 180.02562 * 4 3 2 6 6 O 1.21287 * 119.99552 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00365 * 179.97438 * 5 4 3 8 8 C 1.52992 * 109.47392 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47572 * 180.02562 * 8 7 5 10 10 C 1.35764 * 119.62086 * 90.00062 * 9 8 7 11 11 C 1.35352 * 120.70297 * 180.02562 * 10 9 8 12 12 C 1.40200 * 119.94229 * 359.97438 * 11 10 9 13 13 C 1.36397 * 119.26883 * 0.02562 * 12 11 10 14 14 C 1.34654 * 119.62298 * 269.73260 * 9 8 7 15 15 O 1.22054 * 119.98815 * 359.97438 * 14 9 8 16 16 C 1.53076 * 109.38925 * 239.83588 * 2 1 3 17 17 C 1.53038 * 109.65468 * 301.27062 * 16 2 1 18 18 C 1.53191 * 109.31601 * 298.70344 * 17 16 2 19 19 N 1.46922 * 108.77565 * 54.63674 * 18 17 16 20 20 C 1.36942 * 120.63368 * 126.41271 * 19 18 17 21 21 H 1.08007 * 119.99636 * 331.80772 * 20 19 18 22 22 C 1.38806 * 120.00203 * 151.80824 * 20 19 18 23 23 N 1.31624 * 120.00191 * 343.08250 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 163.07925 * 22 20 19 25 25 H 1.48503 * 109.47195 * 89.99708 * 24 22 20 26 26 H 1.48498 * 109.47355 * 210.00264 * 24 22 20 27 27 H 1.48504 * 109.46850 * 330.00278 * 24 22 20 28 28 C 1.46922 * 118.73835 * 306.38994 * 19 18 17 29 29 H 1.09001 * 109.46785 * 299.92065 * 1 2 3 30 30 H 1.08997 * 109.47136 * 59.92150 * 1 2 3 31 31 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47511 * 180.08363 * 3 2 1 33 33 H 1.09007 * 109.47150 * 300.08073 * 3 2 1 34 34 H 0.97006 * 119.99617 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.47336 * 300.00648 * 7 5 4 36 36 H 1.09007 * 109.46844 * 60.00064 * 7 5 4 37 37 H 1.09006 * 109.47539 * 300.00401 * 8 7 5 38 38 H 1.09000 * 109.47276 * 60.00012 * 8 7 5 39 39 H 1.08003 * 119.65154 * 0.02562 * 10 9 8 40 40 H 1.07995 * 120.03049 * 179.97438 * 11 10 9 41 41 H 1.08008 * 120.36388 * 179.97438 * 12 11 10 42 42 H 1.07995 * 120.34811 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.34317 * 181.25604 * 16 2 1 44 44 H 1.08996 * 109.45666 * 61.36773 * 16 2 1 45 45 H 1.09003 * 109.49709 * 178.74801 * 17 16 2 46 46 H 1.09004 * 109.49788 * 58.65574 * 17 16 2 47 47 H 1.08998 * 109.58773 * 294.84500 * 18 17 16 48 48 H 1.09000 * 109.70240 * 174.49535 * 18 17 16 49 49 H 0.96995 * 120.00379 * 180.02562 * 23 22 20 50 50 H 1.09003 * 109.58836 * 173.39675 * 28 19 18 51 51 H 1.08998 * 109.58900 * 293.68193 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 7 1.5552 2.1326 1.1971 5 6 1.8818 3.4227 1.4104 6 8 2.5778 4.0121 0.6109 7 6 1.3813 4.1331 2.6415 8 6 1.8926 5.5751 2.6416 9 7 1.4065 6.2656 3.8387 10 6 2.1480 6.2400 4.9757 11 6 1.7196 6.8700 6.0945 12 6 0.4984 7.5587 6.0857 13 6 -0.2451 7.5833 4.9424 14 6 0.2321 6.9230 3.7972 15 8 -0.4205 6.9415 2.7659 16 6 2.0383 -0.7255 -1.2484 17 6 1.5035 -2.1594 -1.2640 18 6 2.0173 -2.9053 -0.0285 19 7 1.6545 -2.1390 1.1714 20 6 0.9691 -2.7326 2.1976 21 1 0.3086 -3.5632 1.9966 22 6 1.1233 -2.2670 3.4961 23 7 2.1483 -1.5002 3.8030 24 14 -0.1237 -2.7283 4.8082 25 1 0.3002 -3.9864 5.4735 26 1 -0.2086 -1.6401 5.8150 27 1 -1.4543 -2.9253 4.1788 28 6 2.0414 -0.7238 1.2496 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1313 1.4411 -0.0015 33 1 1.6773 1.9567 -0.8893 34 1 0.9982 1.6612 1.8363 35 1 0.2913 4.1337 2.6427 36 1 1.7453 3.6188 3.5310 37 1 2.9827 5.5741 2.6405 38 1 1.5290 6.0896 1.7521 39 1 3.0896 5.7113 4.9877 40 1 2.3179 6.8423 6.9931 41 1 0.1499 8.0635 6.9746 42 1 -1.1885 8.1082 4.9163 43 1 3.1280 -0.7446 -1.2364 44 1 1.6942 -0.1999 -2.1391 45 1 1.8486 -2.6666 -2.1649 46 1 0.4137 -2.1413 -1.2509 47 1 3.1014 -3.0034 -0.0856 48 1 1.5629 -3.8949 0.0186 49 1 2.2562 -1.1751 4.7105 50 1 1.6008 -0.2731 2.1389 51 1 3.1273 -0.6440 1.2993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500498301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:20 Heat of formation + Delta-G solvation = -25.790318 kcal Electronic energy + Delta-G solvation = -31205.963495 eV Core-core repulsion = 27105.998362 eV Total energy + Delta-G solvation = -4099.965132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.54311 -39.73947 -38.36980 -37.05738 -35.32585 -34.75658 -33.25583 -31.75252 -30.97115 -30.01653 -29.88882 -26.72740 -26.13265 -25.38335 -24.68535 -23.82771 -22.45949 -22.09920 -20.60349 -20.12018 -18.12826 -17.83982 -17.51084 -16.94220 -16.66151 -16.31922 -16.00850 -15.62756 -15.35023 -14.92537 -14.72204 -14.35643 -14.15157 -13.96812 -13.86174 -13.43087 -13.24321 -13.19645 -12.80940 -12.73037 -12.55103 -12.31513 -12.24514 -12.16263 -11.94554 -11.65184 -11.35328 -11.33326 -11.01278 -10.88757 -10.69140 -10.45669 -10.41939 -10.22640 -10.14880 -10.09617 -9.88727 -9.79538 -9.54758 -9.41700 -8.76151 -8.54533 -8.19903 -6.71905 -5.87163 -3.28929 0.59985 1.66195 2.37849 2.77780 3.29716 3.37688 3.37773 3.40279 3.54226 4.34357 4.41906 4.42446 4.61233 4.66589 4.86349 4.94838 5.00340 5.08991 5.11840 5.24665 5.29126 5.41035 5.47280 5.54253 5.55657 5.67424 5.74507 5.75259 5.86335 5.93559 6.01244 6.03119 6.07250 6.13858 6.22105 6.28773 6.38672 6.40632 6.51124 6.58656 6.71377 6.79824 6.84628 6.88233 6.93340 7.00768 7.23868 7.51225 7.71774 7.73372 7.86104 8.36415 8.38105 9.13583 9.76922 10.34519 11.20842 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010864 B = 0.002879 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2576.728948 B = 9724.562585 C =11463.734023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.136 3.864 4 N -0.714 5.714 5 C 0.520 3.480 6 O -0.553 6.553 7 C -0.158 4.158 8 C 0.108 3.892 9 N -0.495 5.495 10 C 0.138 3.862 11 C -0.238 4.238 12 C -0.016 4.016 13 C -0.247 4.247 14 C 0.510 3.490 15 O -0.550 6.550 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.248 4.248 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.903 5.903 24 Si 0.897 3.103 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.186 3.814 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.146 0.854 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.252 0.748 50 H 0.087 0.913 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 13.914 1.919 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C 0.012 3.988 4 N -0.365 5.365 5 C 0.305 3.695 6 O -0.432 6.432 7 C -0.199 4.199 8 C -0.014 4.014 9 N -0.205 5.205 10 C 0.010 3.990 11 C -0.261 4.261 12 C -0.038 4.038 13 C -0.269 4.269 14 C 0.312 3.688 15 O -0.432 6.432 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.311 5.311 20 C -0.377 4.377 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.727 3.273 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.060 3.940 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.181 0.819 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.164 0.836 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.105 0.895 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.471 14.353 0.802 14.383 hybrid contribution -0.774 -0.536 1.304 1.609 sum -0.303 13.817 2.106 13.980 Atomic orbital electron populations 1.21729 0.94510 1.02638 0.99487 1.21549 0.96487 0.92712 0.99781 1.21385 0.98855 0.92045 0.86470 1.46069 1.53045 1.11491 1.25892 1.20147 0.80307 0.82129 0.86910 1.90688 1.38810 1.66342 1.47360 1.21944 1.03971 0.95528 0.98442 1.21726 1.00529 0.91646 0.87502 1.45644 1.19524 1.43325 1.12037 1.22073 0.96137 0.95492 0.85278 1.20669 0.99953 1.06576 0.98887 1.21449 0.92374 0.92321 0.97663 1.22136 1.03868 1.07727 0.93148 1.17215 0.80444 0.80617 0.90503 1.90980 1.55873 1.63406 1.32969 1.21347 0.99941 0.95996 0.96034 1.22042 1.01012 0.95688 0.98678 1.20931 0.96375 0.94249 0.86761 1.43982 1.65473 1.05483 1.16153 1.19167 1.17682 1.15184 0.85700 0.91776 1.25001 0.97006 1.00639 0.96880 1.70041 1.27409 1.38668 1.18663 0.86380 0.81524 0.77729 0.81677 1.21395 1.21600 1.20480 1.20771 0.96169 0.83782 0.93271 0.93720 0.94480 0.90960 0.91797 0.92231 0.75658 0.88086 0.88111 0.88101 0.87249 0.81912 0.83746 0.84903 0.83587 0.92588 0.93369 0.93172 0.91946 0.96575 0.92933 0.93751 0.89480 0.96488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.82 37.16 0.29 -1.84 16 2 C -0.10 -1.77 0.53 -154.37 -0.08 -1.85 16 3 C 0.14 2.21 4.58 -4.04 -0.02 2.19 16 4 N -0.71 -11.05 5.00 -60.29 -0.30 -11.35 16 5 C 0.52 7.85 7.83 -10.99 -0.09 7.76 16 6 O -0.55 -9.82 15.98 5.55 0.09 -9.74 16 7 C -0.16 -1.90 6.02 -27.89 -0.17 -2.07 16 8 C 0.11 1.22 4.63 -4.04 -0.02 1.20 16 9 N -0.50 -5.29 2.58 -119.77 -0.31 -5.60 16 10 C 0.14 1.04 10.28 -16.84 -0.17 0.87 16 11 C -0.24 -1.59 10.01 -39.87 -0.40 -1.99 16 12 C -0.02 -0.12 10.10 -39.51 -0.40 -0.52 16 13 C -0.25 -2.54 9.99 -39.38 -0.39 -2.93 16 14 C 0.51 6.73 7.41 -15.45 -0.11 6.62 16 15 O -0.55 -9.44 16.64 4.87 0.08 -9.35 16 16 C -0.10 -1.52 4.71 -26.67 -0.13 -1.65 16 17 C -0.14 -2.22 5.74 -26.61 -0.15 -2.38 16 18 C 0.14 2.86 6.52 -3.71 -0.02 2.83 16 19 N -0.59 -13.68 2.44 -172.32 -0.42 -14.10 16 20 C -0.25 -6.37 9.58 -15.06 -0.14 -6.51 16 21 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 22 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 23 N -0.90 -24.32 11.20 55.49 0.62 -23.70 16 24 Si 0.90 20.55 29.59 -169.99 -5.03 15.52 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.19 4.01 3.71 -3.71 -0.01 4.00 16 29 H 0.04 0.75 6.87 -51.93 -0.36 0.39 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.34 5.98 -51.93 -0.31 1.03 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.41 6.30 6.22 -40.82 -0.25 6.05 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 0.98 7.97 -51.93 -0.41 0.56 16 38 H 0.11 1.49 7.34 -51.93 -0.38 1.11 16 39 H 0.16 0.76 8.04 -52.48 -0.42 0.34 16 40 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.05 6.34 -51.93 -0.33 0.72 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 49 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 50 H 0.09 2.04 4.96 -51.93 -0.26 1.78 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 402.55 15.07 6.07 6.07 Total: -1.00 -32.36 402.55 -9.49 -41.85 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.18 Total: 6.68 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -2.11 Total: 3.73 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.41 Total: -54.76 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.17 Total: -19.09 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.36 -9.49 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500498301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.062 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds