Wall clock time and date at job start Wed Apr 1 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35736 * 116.99744 * 2 1 4 4 C 1.39282 * 120.85011 * 359.97438 * 3 2 1 5 5 C 1.37952 * 119.09389 * 180.02562 * 4 3 2 6 6 N 1.31981 * 120.82285 * 359.97438 * 5 4 3 7 7 C 1.31940 * 121.86266 * 359.72576 * 6 5 4 8 8 C 1.37993 * 120.82258 * 0.54108 * 7 6 5 9 9 C 1.50703 * 120.45450 * 179.74978 * 8 7 6 10 10 C 1.50701 * 109.47132 * 264.71862 * 9 8 7 11 11 O 1.21283 * 119.99772 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99762 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99594 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47066 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.50063 * 300.06923 * 14 13 12 16 16 C 1.53036 * 109.50047 * 179.97438 * 14 13 12 17 17 C 1.53045 * 109.54237 * 178.65382 * 16 14 13 18 18 C 1.53185 * 109.30982 * 61.36399 * 17 16 14 19 19 N 1.46927 * 108.77908 * 305.36575 * 18 17 16 20 20 C 1.36936 * 120.63416 * 233.33263 * 19 18 17 21 21 H 1.08001 * 120.00145 * 152.68301 * 20 19 18 22 22 C 1.38810 * 119.99911 * 332.68721 * 20 19 18 23 23 N 1.31617 * 120.00093 * 159.35632 * 22 20 19 24 24 Si 1.86800 * 120.00187 * 339.35357 * 22 20 19 25 25 H 1.48503 * 109.47169 * 92.79605 * 24 22 20 26 26 H 1.48491 * 109.47537 * 212.79842 * 24 22 20 27 27 H 1.48507 * 109.47041 * 332.79992 * 24 22 20 28 28 C 1.46923 * 118.73381 * 53.61116 * 19 18 17 29 29 H 1.08997 * 109.47315 * 59.99275 * 1 2 3 30 30 H 1.09000 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46739 * 299.99294 * 1 2 3 32 32 H 1.07999 * 120.45185 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.58669 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.59244 * 180.28867 * 7 6 5 35 35 H 1.09004 * 109.47124 * 144.72044 * 9 8 7 36 36 H 1.08999 * 109.47391 * 24.72401 * 9 8 7 37 37 H 0.96994 * 120.00547 * 0.02562 * 12 10 9 38 38 H 1.09004 * 109.47124 * 60.00182 * 13 12 10 39 39 H 1.09000 * 109.47407 * 299.99725 * 13 12 10 40 40 H 1.09002 * 109.46295 * 299.93177 * 15 14 13 41 41 H 1.08996 * 109.47159 * 59.92841 * 15 14 13 42 42 H 1.08995 * 109.47206 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.46223 * 58.63287 * 16 14 13 44 44 H 1.09004 * 109.45173 * 298.67143 * 16 14 13 45 45 H 1.09003 * 109.49407 * 301.42015 * 17 16 14 46 46 H 1.08993 * 109.49758 * 181.32135 * 17 16 14 47 47 H 1.09002 * 109.58897 * 185.57695 * 18 17 16 48 48 H 1.09001 * 109.58807 * 65.15953 * 18 17 16 49 49 H 0.97004 * 120.00166 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.58834 * 66.18278 * 28 19 18 51 51 H 1.09007 * 109.58682 * 186.59921 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2866 3.6457 -0.0005 7 6 4.0231 2.5510 0.0058 8 6 3.4346 1.3029 0.0011 9 6 4.2839 0.0580 0.0028 10 6 4.4653 -0.4283 -1.4120 11 8 3.9555 0.1768 -2.3312 12 7 5.1948 -1.5350 -1.6559 13 6 5.3716 -2.0074 -3.0313 14 6 6.2348 -3.2706 -3.0297 15 6 7.6012 -2.9548 -2.4183 16 6 6.4193 -3.7651 -4.4662 17 6 7.3103 -5.0094 -4.4689 18 6 6.6329 -6.1192 -3.6589 19 7 6.3206 -5.6035 -2.3190 20 6 6.7393 -6.2713 -1.1992 21 1 6.9137 -5.7299 -0.2811 22 6 6.9396 -7.6441 -1.2441 23 7 7.7049 -8.2272 -0.3460 24 14 6.1231 -8.6640 -2.5792 25 1 7.0483 -8.8014 -3.7327 26 1 5.7964 -10.0100 -2.0438 27 1 4.8756 -7.9914 -3.0227 28 6 5.5452 -4.3609 -2.2035 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2245 2.3566 -0.0014 33 1 1.4008 4.5174 -0.0019 34 1 5.1000 2.6328 0.0108 35 1 3.7930 -0.7160 0.5928 36 1 5.2578 0.2831 0.4373 37 1 5.6028 -2.0187 -0.9208 38 1 5.8624 -1.2332 -3.6211 39 1 4.3978 -2.2329 -3.4661 40 1 8.0929 -2.1809 -3.0079 41 1 7.4689 -2.6029 -1.3952 42 1 8.2156 -3.8551 -2.4170 43 1 6.8876 -2.9819 -5.0625 44 1 5.4473 -4.0136 -4.8923 45 1 8.2739 -4.7678 -4.0200 46 1 7.4605 -5.3471 -5.4942 47 1 7.3058 -6.9726 -3.5742 48 1 5.7126 -6.4250 -4.1564 49 1 7.8446 -9.1867 -0.3771 50 1 4.5361 -4.5233 -2.5823 51 1 5.5003 -4.0540 -1.1585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500504741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:01 Heat of formation + Delta-G solvation = -19.415194 kcal Electronic energy + Delta-G solvation = -31236.109995 eV Core-core repulsion = 27136.421309 eV Total energy + Delta-G solvation = -4099.688686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.04875 -39.75939 -38.56688 -38.37452 -35.11001 -33.55155 -33.18329 -31.46149 -31.31378 -30.82583 -28.57081 -27.77735 -26.73577 -25.75314 -25.22227 -23.16052 -22.85366 -22.00369 -21.18118 -20.25701 -18.63357 -18.14148 -17.41777 -17.19188 -16.67094 -16.10857 -16.04761 -15.42117 -15.32952 -15.14013 -15.08448 -14.51020 -14.26634 -14.11511 -14.04298 -13.74253 -13.58370 -13.45785 -13.27515 -12.89372 -12.67793 -12.51288 -12.32207 -12.14280 -11.88987 -11.81008 -11.55674 -11.45860 -11.28343 -11.22027 -10.68696 -10.52638 -10.46372 -10.03986 -9.96246 -9.83658 -9.72776 -9.61593 -9.44883 -9.35334 -8.93177 -8.91330 -8.62783 -6.98794 -5.98029 -3.33517 0.84046 1.13559 2.73361 2.84218 3.25157 3.30207 3.46907 3.49691 3.67249 4.17544 4.36931 4.50673 4.51917 4.62248 4.77446 4.79074 4.81962 4.92407 5.04007 5.08476 5.10793 5.16866 5.17866 5.19960 5.35688 5.38396 5.48851 5.61579 5.69088 5.72285 5.79488 5.81949 5.92115 5.96660 6.01920 6.21071 6.25206 6.30541 6.32999 6.36463 6.51292 6.58235 6.61027 6.64960 6.71571 6.76158 6.90262 7.00622 7.60783 7.78817 7.92801 8.29089 8.31790 8.90845 9.69418 10.07698 11.17815 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002443 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.100451 B =11459.061746 C =12050.898621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.184 3.816 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.508 5.508 7 C 0.144 3.856 8 C -0.146 4.146 9 C -0.092 4.092 10 C 0.517 3.483 11 O -0.542 6.542 12 N -0.723 5.723 13 C 0.135 3.865 14 C -0.093 4.093 15 C -0.131 4.131 16 C -0.096 4.096 17 C -0.136 4.136 18 C 0.124 3.876 19 N -0.602 5.602 20 C -0.258 4.258 21 H 0.085 0.915 22 C 0.024 3.976 23 N -0.908 5.908 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.271 1.271 28 C 0.162 3.838 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.404 0.596 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.072 0.928 48 H 0.023 0.977 49 H 0.262 0.738 50 H 0.022 0.978 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.511 19.361 0.007 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.130 3.870 4 C -0.284 4.284 5 C -0.025 4.025 6 N -0.220 5.220 7 C -0.012 4.012 8 C -0.149 4.149 9 C -0.133 4.133 10 C 0.303 3.697 11 O -0.419 6.419 12 N -0.375 5.375 13 C 0.011 3.989 14 C -0.095 4.095 15 C -0.188 4.188 16 C -0.134 4.134 17 C -0.175 4.175 18 C -0.002 4.002 19 N -0.325 5.325 20 C -0.386 4.386 21 H 0.103 0.897 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.217 1.217 26 H -0.233 1.233 27 H -0.197 1.197 28 C 0.036 3.964 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.240 0.760 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.040 0.960 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.342 20.196 -0.569 22.698 hybrid contribution -1.023 -1.749 -0.452 2.076 sum -11.365 18.447 -1.021 21.691 Atomic orbital electron populations 1.23149 0.77710 1.04561 1.01473 1.86092 1.21904 1.26132 1.87344 1.19120 0.91863 0.84739 0.91321 1.22171 1.01448 0.93188 1.11562 1.22520 0.90344 0.96885 0.92722 1.67721 1.07090 1.31903 1.15296 1.22510 1.00205 0.86127 0.92349 1.19733 0.90840 0.96431 1.07898 1.20425 1.01126 0.96102 0.95643 1.20401 0.78139 0.80372 0.90831 1.90692 1.48293 1.56711 1.46248 1.46076 1.53232 1.28063 1.10159 1.21385 0.99699 0.95438 0.82374 1.21321 0.96315 0.94349 0.97507 1.21772 0.96121 1.01824 0.99063 1.21363 0.99865 0.97474 0.94699 1.22048 0.99799 0.96372 0.99290 1.21346 0.97110 0.95666 0.86028 1.44295 1.61453 1.25184 1.01582 1.18873 1.39232 0.89792 0.90697 0.89723 1.25267 0.98763 0.96522 0.96971 1.69832 1.37431 1.10592 1.37255 0.86964 0.80886 0.79412 0.81405 1.21686 1.23302 1.19656 1.20915 0.92334 0.85710 0.97448 0.92340 0.87723 0.92390 0.84441 0.82651 0.82260 0.87359 0.87565 0.76022 0.91918 0.91867 0.93986 0.93510 0.90379 0.92788 0.92473 0.91263 0.92843 0.91029 0.95905 0.92791 0.96006 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.30 -3.38 9.77 -18.91 -0.18 -3.57 16 3 C 0.18 2.09 6.70 -38.82 -0.26 1.83 16 4 C -0.26 -2.49 9.11 -39.30 -0.36 -2.85 16 5 C 0.13 1.28 11.17 -17.59 -0.20 1.08 16 6 N -0.51 -5.93 10.36 -13.33 -0.14 -6.07 16 7 C 0.14 1.59 10.83 -17.60 -0.19 1.40 16 8 C -0.15 -1.67 4.40 -104.34 -0.46 -2.13 16 9 C -0.09 -0.94 5.61 -29.03 -0.16 -1.10 16 10 C 0.52 6.89 7.82 -10.98 -0.09 6.81 16 11 O -0.54 -9.29 16.03 5.56 0.09 -9.20 16 12 N -0.72 -9.09 5.00 -60.29 -0.30 -9.40 16 13 C 0.14 1.86 4.57 -4.04 -0.02 1.84 16 14 C -0.09 -1.39 0.53 -154.39 -0.08 -1.47 16 15 C -0.13 -1.93 7.81 37.16 0.29 -1.64 16 16 C -0.10 -1.42 4.71 -26.69 -0.13 -1.55 16 17 C -0.14 -2.29 5.74 -26.61 -0.15 -2.44 16 18 C 0.12 2.60 4.20 -3.71 -0.02 2.59 16 19 N -0.60 -13.42 2.21 -172.32 -0.38 -13.80 16 20 C -0.26 -6.82 10.04 -15.06 -0.15 -6.98 16 21 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 22 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 23 N -0.91 -27.13 13.97 55.49 0.78 -26.35 16 24 Si 0.88 22.03 24.34 -169.99 -4.14 17.90 16 25 H -0.29 -6.99 6.62 56.52 0.37 -6.61 16 26 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 27 H -0.27 -6.70 6.64 56.52 0.38 -6.32 16 28 C 0.16 2.96 4.93 -3.71 -0.02 2.94 16 29 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 32 H 0.14 0.92 6.47 -52.49 -0.34 0.58 16 33 H 0.16 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.03 7.77 -51.93 -0.40 0.62 16 36 H 0.11 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.40 4.59 6.22 -40.82 -0.25 4.34 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.64 6.86 -51.93 -0.36 0.29 16 42 H 0.08 1.38 5.97 -51.93 -0.31 1.07 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.20 6.34 -51.93 -0.33 0.87 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.66 4.51 -51.93 -0.23 1.43 16 48 H 0.02 0.49 7.06 -51.93 -0.37 0.12 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 1.06 6.84 -51.93 -0.36 0.70 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -34.13 394.42 -7.42 -41.56 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.01 Total: 2.91 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.08 Total: 0.09 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.04 Total: -55.62 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.10 Total: -12.77 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.13 -7.42 -41.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500504741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.142 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds