Wall clock time and date at job start Wed Apr 1 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35736 * 116.99744 * 2 1 4 4 C 1.39282 * 120.85011 * 359.97438 * 3 2 1 5 5 C 1.37952 * 119.09389 * 180.02562 * 4 3 2 6 6 N 1.31981 * 120.82285 * 359.97438 * 5 4 3 7 7 C 1.31940 * 121.86266 * 359.72576 * 6 5 4 8 8 C 1.37993 * 120.82258 * 0.54108 * 7 6 5 9 9 C 1.50703 * 120.45450 * 179.74978 * 8 7 6 10 10 C 1.50701 * 109.47132 * 264.71862 * 9 8 7 11 11 O 1.21283 * 119.99772 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99762 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99594 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47066 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.50063 * 300.06923 * 14 13 12 16 16 C 1.53036 * 109.50047 * 179.97438 * 14 13 12 17 17 C 1.53045 * 109.54237 * 178.65382 * 16 14 13 18 18 C 1.53185 * 109.30982 * 61.36399 * 17 16 14 19 19 N 1.46927 * 108.77908 * 305.36575 * 18 17 16 20 20 C 1.36936 * 120.63416 * 233.33263 * 19 18 17 21 21 H 1.08001 * 120.00145 * 152.68301 * 20 19 18 22 22 C 1.38810 * 119.99911 * 332.68721 * 20 19 18 23 23 N 1.31617 * 120.00093 * 159.35632 * 22 20 19 24 24 Si 1.86800 * 120.00187 * 339.35357 * 22 20 19 25 25 H 1.48503 * 109.47169 * 92.79605 * 24 22 20 26 26 H 1.48491 * 109.47537 * 212.79842 * 24 22 20 27 27 H 1.48507 * 109.47041 * 332.79992 * 24 22 20 28 28 C 1.46923 * 118.73381 * 53.61116 * 19 18 17 29 29 H 1.08997 * 109.47315 * 59.99275 * 1 2 3 30 30 H 1.09000 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46739 * 299.99294 * 1 2 3 32 32 H 1.07999 * 120.45185 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.58669 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.59244 * 180.28867 * 7 6 5 35 35 H 1.09004 * 109.47124 * 144.72044 * 9 8 7 36 36 H 1.08999 * 109.47391 * 24.72401 * 9 8 7 37 37 H 0.96994 * 120.00547 * 0.02562 * 12 10 9 38 38 H 1.09004 * 109.47124 * 60.00182 * 13 12 10 39 39 H 1.09000 * 109.47407 * 299.99725 * 13 12 10 40 40 H 1.09002 * 109.46295 * 299.93177 * 15 14 13 41 41 H 1.08996 * 109.47159 * 59.92841 * 15 14 13 42 42 H 1.08995 * 109.47206 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.46223 * 58.63287 * 16 14 13 44 44 H 1.09004 * 109.45173 * 298.67143 * 16 14 13 45 45 H 1.09003 * 109.49407 * 301.42015 * 17 16 14 46 46 H 1.08993 * 109.49758 * 181.32135 * 17 16 14 47 47 H 1.09002 * 109.58897 * 185.57695 * 18 17 16 48 48 H 1.09001 * 109.58807 * 65.15953 * 18 17 16 49 49 H 0.97004 * 120.00166 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.58834 * 66.18278 * 28 19 18 51 51 H 1.09007 * 109.58682 * 186.59921 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 -0.0005 5 6 1.9676 3.5981 -0.0011 6 7 3.2866 3.6457 -0.0005 7 6 4.0231 2.5510 0.0058 8 6 3.4346 1.3029 0.0011 9 6 4.2839 0.0580 0.0028 10 6 4.4653 -0.4283 -1.4120 11 8 3.9555 0.1768 -2.3312 12 7 5.1948 -1.5350 -1.6559 13 6 5.3716 -2.0074 -3.0313 14 6 6.2348 -3.2706 -3.0297 15 6 7.6012 -2.9548 -2.4183 16 6 6.4193 -3.7651 -4.4662 17 6 7.3103 -5.0094 -4.4689 18 6 6.6329 -6.1192 -3.6589 19 7 6.3206 -5.6035 -2.3190 20 6 6.7393 -6.2713 -1.1992 21 1 6.9137 -5.7299 -0.2811 22 6 6.9396 -7.6441 -1.2441 23 7 7.7049 -8.2272 -0.3460 24 14 6.1231 -8.6640 -2.5792 25 1 7.0483 -8.8014 -3.7327 26 1 5.7964 -10.0100 -2.0438 27 1 4.8756 -7.9914 -3.0227 28 6 5.5452 -4.3609 -2.2035 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.2245 2.3566 -0.0014 33 1 1.4008 4.5174 -0.0019 34 1 5.1000 2.6328 0.0108 35 1 3.7930 -0.7160 0.5928 36 1 5.2578 0.2831 0.4373 37 1 5.6028 -2.0187 -0.9208 38 1 5.8624 -1.2332 -3.6211 39 1 4.3978 -2.2329 -3.4661 40 1 8.0929 -2.1809 -3.0079 41 1 7.4689 -2.6029 -1.3952 42 1 8.2156 -3.8551 -2.4170 43 1 6.8876 -2.9819 -5.0625 44 1 5.4473 -4.0136 -4.8923 45 1 8.2739 -4.7678 -4.0200 46 1 7.4605 -5.3471 -5.4942 47 1 7.3058 -6.9726 -3.5742 48 1 5.7126 -6.4250 -4.1564 49 1 7.8446 -9.1867 -0.3771 50 1 4.5361 -4.5233 -2.5823 51 1 5.5003 -4.0540 -1.1585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500504741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:00 Heat of formation + Delta-G solvation = -42.649149 kcal Electronic energy + Delta-G solvation = -31237.117494 eV Core-core repulsion = 27136.421309 eV Total energy + Delta-G solvation = -4100.696186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82428 -40.91276 -39.80877 -39.14308 -36.54770 -34.77437 -34.34024 -33.03075 -32.35987 -32.18234 -29.40729 -28.41937 -28.05718 -27.26179 -26.65960 -23.88469 -23.86050 -23.52484 -22.61401 -21.30380 -19.57179 -19.28033 -18.71239 -18.16987 -18.05181 -17.25206 -17.05462 -16.74533 -16.48631 -15.96148 -15.91030 -15.71721 -15.45279 -15.41231 -15.17706 -15.14041 -14.82956 -14.40774 -14.22955 -14.16381 -14.08276 -13.95974 -13.46399 -13.28375 -13.15331 -12.92475 -12.74574 -12.55894 -12.48466 -12.39446 -12.13744 -12.06674 -11.94541 -11.63612 -11.47972 -11.26382 -11.10892 -10.93625 -10.62778 -10.51714 -10.09635 -10.00460 -9.71814 -8.87476 -8.13433 -5.43306 0.09912 0.36258 1.30047 1.41714 1.49554 1.71401 2.18995 2.28977 2.43442 2.87873 3.08708 3.33769 3.48798 3.67037 3.82924 3.84011 3.87437 3.91405 3.94764 4.06730 4.21950 4.27254 4.32396 4.33042 4.38957 4.43301 4.43619 4.64934 4.66273 4.67475 4.69101 4.75957 4.78575 4.84606 4.93019 4.96667 5.00366 5.05957 5.09397 5.11866 5.17336 5.32712 5.33900 5.39992 5.53310 5.59636 5.68707 5.90600 6.16607 6.21168 6.59716 6.95040 7.03901 7.29862 7.66361 8.07887 9.06233 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016602 B = 0.002443 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.100451 B =11459.061746 C =12050.898621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.165 3.835 4 C -0.263 4.263 5 C 0.125 3.875 6 N -0.532 5.532 7 C 0.133 3.867 8 C -0.165 4.165 9 C -0.086 4.086 10 C 0.518 3.482 11 O -0.582 6.582 12 N -0.718 5.718 13 C 0.145 3.855 14 C -0.079 4.079 15 C -0.125 4.125 16 C -0.095 4.095 17 C -0.128 4.128 18 C 0.116 3.884 19 N -0.613 5.613 20 C -0.235 4.235 21 H 0.060 0.940 22 C -0.035 4.035 23 N -0.956 5.956 24 Si 0.940 3.060 25 H -0.278 1.278 26 H -0.316 1.316 27 H -0.266 1.266 28 C 0.159 3.841 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.185 0.815 34 H 0.176 0.824 35 H 0.114 0.886 36 H 0.136 0.864 37 H 0.410 0.590 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.046 0.954 48 H 0.026 0.974 49 H 0.259 0.741 50 H 0.021 0.979 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.518 21.223 -1.248 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.111 3.889 4 C -0.283 4.283 5 C -0.031 4.031 6 N -0.245 5.245 7 C -0.022 4.022 8 C -0.168 4.168 9 C -0.126 4.126 10 C 0.306 3.694 11 O -0.462 6.462 12 N -0.371 5.371 13 C 0.020 3.980 14 C -0.081 4.081 15 C -0.183 4.183 16 C -0.133 4.133 17 C -0.167 4.167 18 C -0.008 4.008 19 N -0.337 5.337 20 C -0.365 4.365 21 H 0.078 0.922 22 C -0.229 4.229 23 N -0.603 5.603 24 Si 0.771 3.229 25 H -0.205 1.205 26 H -0.245 1.245 27 H -0.191 1.191 28 C 0.034 3.966 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.181 0.819 33 H 0.201 0.799 34 H 0.193 0.807 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.247 0.753 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.039 0.961 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.365 22.082 -1.849 24.904 hybrid contribution -0.769 -2.238 -0.031 2.366 sum -12.134 19.844 -1.879 23.336 Atomic orbital electron populations 1.23403 0.75966 1.05703 1.02626 1.86054 1.23867 1.26378 1.87413 1.19433 0.92343 0.85443 0.91687 1.22467 1.02776 0.92496 1.10578 1.23049 0.90065 0.98209 0.91812 1.67750 1.08158 1.32359 1.16191 1.22822 1.01126 0.86033 0.92221 1.19939 0.91351 0.96886 1.08608 1.20446 1.02678 0.95869 0.93623 1.20889 0.77106 0.79793 0.91662 1.90672 1.49884 1.57897 1.47713 1.46051 1.53044 1.27963 1.09998 1.21211 0.98935 0.94739 0.83083 1.21142 0.96158 0.93586 0.97238 1.21700 0.95523 1.00997 1.00031 1.21388 0.99957 0.97231 0.94696 1.21948 0.99339 0.95742 0.99675 1.21408 0.97011 0.96555 0.85871 1.44399 1.62195 1.26026 1.01048 1.18855 1.36759 0.89674 0.91181 0.92244 1.25820 0.99989 0.97788 0.99329 1.69950 1.39863 1.10564 1.39918 0.86018 0.80169 0.77316 0.79446 1.20502 1.24531 1.19064 1.21068 0.92112 0.84993 0.98395 0.91833 0.86708 0.90529 0.81893 0.79852 0.80687 0.86767 0.84630 0.75260 0.91214 0.92666 0.91881 0.92842 0.93406 0.90011 0.91976 0.91872 0.90415 0.93562 0.95651 0.93182 0.96068 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 113.37 1.12 1.33 16 2 O -0.33 -6.94 9.77 -90.59 -0.88 -7.82 16 3 C 0.16 3.59 6.70 22.76 0.15 3.74 16 4 C -0.26 -4.55 9.11 22.45 0.20 -4.35 16 5 C 0.12 2.22 11.17 84.60 0.95 3.16 16 6 N -0.53 -11.84 10.36 -196.08 -2.03 -13.87 16 7 C 0.13 2.81 10.83 84.62 0.92 3.73 16 8 C -0.16 -3.60 4.40 -19.68 -0.09 -3.68 16 9 C -0.09 -1.63 5.61 29.10 0.16 -1.46 16 10 C 0.52 13.07 7.82 87.66 0.69 13.76 16 11 O -0.58 -19.36 16.03 -3.04 -0.05 -19.41 16 12 N -0.72 -16.74 5.00 -463.05 -2.31 -19.05 16 13 C 0.14 3.64 4.57 86.38 0.39 4.03 16 14 C -0.08 -2.19 0.53 -52.10 -0.03 -2.21 16 15 C -0.13 -3.45 7.81 71.98 0.56 -2.89 16 16 C -0.09 -2.50 4.71 30.62 0.14 -2.35 16 17 C -0.13 -3.99 5.74 30.67 0.18 -3.82 16 18 C 0.12 4.73 4.20 86.36 0.36 5.09 16 19 N -0.61 -26.96 2.21 -699.10 -1.54 -28.51 16 20 C -0.23 -12.62 10.04 84.03 0.84 -11.78 16 21 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 22 C -0.03 -1.98 5.23 84.86 0.44 -1.53 16 23 N -0.96 -58.88 13.97 21.65 0.30 -58.57 16 24 Si 0.94 46.20 24.34 68.60 1.67 47.87 16 25 H -0.28 -13.00 6.62 99.48 0.66 -12.34 16 26 H -0.32 -15.97 7.11 99.48 0.71 -15.26 16 27 H -0.27 -12.62 6.64 99.48 0.66 -11.96 16 28 C 0.16 5.61 4.93 86.36 0.43 6.04 16 29 H 0.06 0.72 7.71 -2.39 -0.02 0.70 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 0.65 7.71 -2.39 -0.02 0.63 16 32 H 0.16 1.79 6.47 -2.91 -0.02 1.77 16 33 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.11 2.02 7.77 -2.38 -0.02 2.00 16 36 H 0.14 1.68 8.06 -2.39 -0.02 1.66 16 37 H 0.41 8.58 6.22 -92.71 -0.58 8.01 16 38 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.38 6.86 -2.39 -0.02 1.36 16 42 H 0.05 1.63 5.97 -2.39 -0.01 1.62 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.06 2.06 6.34 -2.39 -0.02 2.05 16 46 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 2.11 4.51 -2.39 -0.01 2.10 16 48 H 0.03 1.03 7.06 -2.39 -0.02 1.01 16 49 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 2.07 6.84 -2.38 -0.02 2.05 16 Total: -1.00 -75.37 394.42 2.84 -72.52 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.27 Total: 20.04 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 7.42 Total: 6.80 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -5.58 Total: -120.00 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.93 Total: -27.24 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.67 Total: 47.87 kcal Total: -75.37 2.84 -72.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500504741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.875 kcal (2) G-P(sol) polarization free energy of solvation -75.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds