Wall clock time and date at job start Wed Apr 1 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35735 * 117.00481 * 2 1 4 4 C 1.39290 * 120.84654 * 0.02762 * 3 2 1 5 5 C 1.37949 * 119.09508 * 179.97438 * 4 3 2 6 6 N 1.31970 * 120.82337 * 0.02569 * 5 4 3 7 7 C 1.31959 * 121.86377 * 359.65417 * 6 5 4 8 8 C 1.37991 * 120.81680 * 0.63431 * 7 6 5 9 9 C 1.50704 * 120.45051 * 179.68618 * 8 7 6 10 10 C 1.50709 * 109.46609 * 264.72198 * 9 8 7 11 11 O 1.21280 * 119.99967 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99619 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99817 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47177 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.49715 * 59.93682 * 14 13 12 16 16 C 1.53041 * 109.49828 * 180.02562 * 14 13 12 17 17 C 1.53043 * 109.54007 * 181.34804 * 16 14 13 18 18 C 1.53188 * 109.31083 * 298.63633 * 17 16 14 19 19 N 1.46920 * 108.78041 * 54.63263 * 18 17 16 20 20 C 1.36942 * 120.63167 * 126.40860 * 19 18 17 21 21 H 1.07996 * 120.00265 * 331.82308 * 20 19 18 22 22 C 1.38810 * 119.99944 * 151.82226 * 20 19 18 23 23 N 1.31622 * 119.99791 * 343.08469 * 22 20 19 24 24 Si 1.86800 * 120.00151 * 163.08328 * 22 20 19 25 25 H 1.48499 * 109.47015 * 60.00031 * 24 22 20 26 26 H 1.48501 * 109.47145 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47060 * 299.99871 * 24 22 20 28 28 C 1.46923 * 118.73890 * 306.39262 * 19 18 17 29 29 H 1.09000 * 109.47829 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46860 * 299.99706 * 1 2 3 31 31 H 1.09000 * 109.47549 * 59.99263 * 1 2 3 32 32 H 1.08000 * 120.44741 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.58340 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.58487 * 180.31838 * 7 6 5 35 35 H 1.08998 * 109.47416 * 144.72074 * 9 8 7 36 36 H 1.09003 * 109.47077 * 24.71793 * 9 8 7 37 37 H 0.96998 * 120.00176 * 0.02562 * 12 10 9 38 38 H 1.09004 * 109.46660 * 60.00581 * 13 12 10 39 39 H 1.08997 * 109.47508 * 300.00759 * 13 12 10 40 40 H 1.09003 * 109.47353 * 180.02562 * 15 14 13 41 41 H 1.08994 * 109.47306 * 300.06628 * 15 14 13 42 42 H 1.09006 * 109.47298 * 60.06695 * 15 14 13 43 43 H 1.09002 * 109.45851 * 301.37151 * 16 14 13 44 44 H 1.09002 * 109.46188 * 61.32793 * 16 14 13 45 45 H 1.09003 * 109.49383 * 58.58884 * 17 16 14 46 46 H 1.08996 * 109.49562 * 178.67731 * 17 16 14 47 47 H 1.08998 * 109.58458 * 294.84236 * 18 17 16 48 48 H 1.09008 * 109.69883 * 174.49249 * 18 17 16 49 49 H 0.96999 * 119.99934 * 180.02562 * 23 22 20 50 50 H 1.08992 * 109.58792 * 293.81912 * 28 19 18 51 51 H 1.09003 * 109.70652 * 173.45934 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3041 2.3887 0.0006 5 6 1.9677 3.5980 0.0011 6 7 3.2865 3.6456 0.0005 7 6 4.0231 2.5508 0.0062 8 6 3.4345 1.3027 -0.0001 9 6 4.2838 0.0578 -0.0006 10 6 4.4645 -0.4263 -1.4163 11 8 3.9535 0.1797 -2.3343 12 7 5.1938 -1.5326 -1.6622 13 6 5.3691 -2.0036 -3.0384 14 6 6.2313 -3.2674 -3.0390 15 6 5.5443 -4.3547 -2.2105 16 6 6.4153 -3.7595 -4.4764 17 6 7.2496 -5.0426 -4.4754 18 6 8.6319 -4.7475 -3.8847 19 7 8.4595 -4.1388 -2.5587 20 6 9.0862 -4.6670 -1.4616 21 1 9.3201 -5.7208 -1.4285 22 6 9.4208 -3.8479 -0.3920 23 7 9.4497 -2.5412 -0.5477 24 14 9.8299 -4.6000 1.2682 25 1 11.0006 -5.5027 1.1277 26 1 10.1504 -3.5198 2.2355 27 1 8.6633 -5.3753 1.7614 28 6 7.6022 -2.9523 -2.4321 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 0.2245 2.3566 0.0006 33 1 1.4008 4.5173 0.0011 34 1 5.1000 2.6326 0.0108 35 1 3.7931 -0.7170 0.5885 36 1 5.2580 0.2823 0.4338 37 1 5.6021 -2.0175 -0.9280 38 1 5.8591 -1.2287 -3.6279 39 1 4.3948 -2.2286 -3.4723 40 1 6.1591 -5.2548 -2.2108 41 1 5.4138 -4.0036 -1.1869 42 1 4.5700 -4.5808 -2.6440 43 1 5.4397 -3.9611 -4.9189 44 1 6.9272 -2.9941 -5.0597 45 1 6.7502 -5.8007 -3.8719 46 1 7.3603 -5.4053 -5.4972 47 1 9.1681 -4.0578 -4.5365 48 1 9.1967 -5.6750 -3.7903 49 1 9.6839 -1.9688 0.1996 50 1 8.0544 -2.1162 -2.9654 51 1 7.4851 -2.6940 -1.3796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500504742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:04 Heat of formation + Delta-G solvation = -45.156388 kcal Electronic energy + Delta-G solvation = -31580.416284 eV Core-core repulsion = 27479.611376 eV Total energy + Delta-G solvation = -4100.804908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83745 -40.83266 -39.68389 -39.14997 -36.29211 -34.85876 -34.37167 -32.91875 -32.19660 -31.61042 -29.39478 -28.40939 -27.90973 -27.22268 -26.54579 -23.98505 -23.90146 -23.49241 -22.07592 -21.30988 -19.59798 -19.29004 -18.50296 -18.19592 -18.04460 -17.19446 -16.80803 -16.68473 -16.31466 -15.93355 -15.87724 -15.70828 -15.38382 -15.21910 -15.13308 -14.94877 -14.69636 -14.44575 -14.28979 -14.12332 -13.86779 -13.74973 -13.31809 -13.06632 -12.99717 -12.82961 -12.66422 -12.54181 -12.47936 -12.26404 -12.15834 -12.12592 -11.83597 -11.70607 -11.39458 -11.23005 -10.95802 -10.92650 -10.53408 -10.47317 -10.10886 -9.99472 -9.73656 -8.58766 -7.80361 -5.25572 0.07871 0.34639 1.51130 1.52737 1.59179 1.69233 2.18165 2.29975 2.55856 2.86196 3.32034 3.46135 3.63615 3.65129 3.81793 3.89834 3.97633 4.01464 4.06023 4.08188 4.20724 4.33509 4.34572 4.37340 4.41739 4.53939 4.57673 4.62745 4.68167 4.74115 4.76182 4.78988 4.83014 4.92896 5.01006 5.05843 5.06904 5.13088 5.18621 5.31756 5.35743 5.42580 5.49718 5.56424 5.57940 5.66110 5.75211 5.81179 6.21110 6.45448 6.58525 7.02111 7.21889 7.27152 7.92343 8.45488 9.24855 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.002935 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.724885 B = 9537.133821 C =10588.919673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.169 3.831 4 C -0.259 4.259 5 C 0.125 3.875 6 N -0.532 5.532 7 C 0.129 3.871 8 C -0.162 4.162 9 C -0.086 4.086 10 C 0.517 3.483 11 O -0.582 6.582 12 N -0.716 5.716 13 C 0.145 3.855 14 C -0.090 4.090 15 C -0.117 4.117 16 C -0.095 4.095 17 C -0.123 4.123 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.258 4.258 21 H 0.062 0.938 22 C -0.041 4.041 23 N -0.930 5.930 24 Si 0.958 3.042 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.276 1.276 28 C 0.199 3.801 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.169 0.831 33 H 0.188 0.812 34 H 0.167 0.833 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.408 0.592 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.005 0.995 48 H 0.051 0.949 49 H 0.250 0.750 50 H -0.021 1.021 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.313 4.094 1.282 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.115 3.885 4 C -0.280 4.280 5 C -0.031 4.031 6 N -0.245 5.245 7 C -0.026 4.026 8 C -0.166 4.166 9 C -0.126 4.126 10 C 0.305 3.695 11 O -0.463 6.463 12 N -0.367 5.367 13 C 0.021 3.979 14 C -0.092 4.092 15 C -0.174 4.174 16 C -0.133 4.133 17 C -0.161 4.161 18 C 0.011 3.989 19 N -0.327 5.327 20 C -0.388 4.388 21 H 0.080 0.920 22 C -0.237 4.237 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.210 1.210 26 H -0.221 1.221 27 H -0.201 1.201 28 C 0.073 3.927 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.186 0.814 33 H 0.205 0.795 34 H 0.184 0.816 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.244 0.756 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.023 0.977 48 H 0.070 0.930 49 H 0.059 0.941 50 H -0.003 1.003 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.133 5.181 0.734 19.835 hybrid contribution 0.443 -0.995 1.043 1.508 sum -18.689 4.186 1.777 19.234 Atomic orbital electron populations 1.23432 0.75797 1.05874 1.02670 1.86047 1.24017 1.26157 1.87394 1.19343 0.91939 0.85655 0.91607 1.22480 1.02863 0.92249 1.10387 1.23101 0.89882 0.98428 0.91739 1.67746 1.08383 1.32126 1.16197 1.22735 1.00893 0.86373 0.92578 1.19866 0.91621 0.96479 1.08611 1.20414 1.02239 0.96255 0.93685 1.20876 0.77245 0.79699 0.91711 1.90642 1.50350 1.57546 1.47742 1.46071 1.52502 1.28073 1.10053 1.21212 0.98923 0.95070 0.82738 1.21339 0.96231 0.94180 0.97497 1.21622 0.99156 0.98303 0.98362 1.21377 1.00241 0.97406 0.94315 1.21915 0.96117 0.97391 1.00725 1.21096 0.95591 0.95925 0.86336 1.44219 1.52795 1.32438 1.03221 1.19389 1.32313 0.92027 0.95121 0.91996 1.25641 1.00131 0.95689 1.02260 1.70178 1.53124 1.03360 1.30892 0.85499 0.78196 0.77159 0.80492 1.20981 1.22124 1.20145 1.20527 0.86435 0.86533 0.99168 0.86370 0.90515 0.91802 0.81387 0.79545 0.81625 0.86301 0.85992 0.75576 0.93718 0.91406 0.92584 0.93930 0.92084 0.90510 0.93235 0.91659 0.90313 0.97666 0.93035 0.94118 1.00283 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 113.37 1.12 1.32 16 2 O -0.32 -7.36 9.76 -90.58 -0.88 -8.25 16 3 C 0.17 4.13 6.70 22.76 0.15 4.28 16 4 C -0.26 -5.03 9.11 22.45 0.20 -4.82 16 5 C 0.12 2.56 11.17 84.60 0.95 3.51 16 6 N -0.53 -14.09 10.36 -196.09 -2.03 -16.13 16 7 C 0.13 3.48 10.83 84.62 0.92 4.39 16 8 C -0.16 -4.35 4.40 -19.68 -0.09 -4.44 16 9 C -0.09 -2.20 5.61 29.11 0.16 -2.04 16 10 C 0.52 16.83 7.82 87.66 0.69 17.51 16 11 O -0.58 -22.96 16.03 -3.03 -0.05 -23.01 16 12 N -0.72 -22.98 4.99 -463.05 -2.31 -25.29 16 13 C 0.14 4.81 4.57 86.38 0.39 5.20 16 14 C -0.09 -3.10 0.53 -52.10 -0.03 -3.13 16 15 C -0.12 -3.75 7.81 71.98 0.56 -3.19 16 16 C -0.10 -2.93 4.71 30.62 0.14 -2.79 16 17 C -0.12 -3.83 5.74 30.67 0.18 -3.65 16 18 C 0.14 5.46 6.52 86.36 0.56 6.02 16 19 N -0.60 -28.69 2.43 -699.11 -1.70 -30.38 16 20 C -0.26 -13.48 9.58 84.03 0.81 -12.68 16 21 H 0.06 3.19 7.88 -2.91 -0.02 3.17 16 22 C -0.04 -2.19 4.92 84.86 0.42 -1.77 16 23 N -0.93 -51.94 11.19 21.65 0.24 -51.70 16 24 Si 0.96 42.71 29.59 68.60 2.03 44.74 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.20 8.93 3.72 86.37 0.32 9.25 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 0.66 7.71 -2.38 -0.02 0.65 16 31 H 0.06 0.74 7.71 -2.39 -0.02 0.72 16 32 H 0.17 2.02 6.47 -2.91 -0.02 2.00 16 33 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.12 2.68 7.77 -2.39 -0.02 2.66 16 36 H 0.12 2.73 8.06 -2.39 -0.02 2.71 16 37 H 0.41 12.88 6.22 -92.71 -0.58 12.30 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 1.99 5.97 -2.39 -0.01 1.97 16 41 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 42 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 2.03 6.34 -2.39 -0.02 2.01 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.01 0.22 8.14 -2.39 -0.02 0.21 16 48 H 0.05 2.03 7.93 -2.38 -0.02 2.01 16 49 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 50 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 51 H 0.07 3.29 4.97 -2.39 -0.01 3.27 16 Total: -1.00 -70.57 400.87 3.11 -67.46 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.36 Total: 29.55 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 7.45 Total: 12.99 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.80 Total: -123.50 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.93 Total: -31.25 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.57 3.11 -67.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500504742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.306 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds