Wall clock time and date at job start Wed Apr 1 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38353 * 119.40797 * 2 1 4 4 C 1.38336 * 119.45933 * 179.75322 * 3 2 1 5 5 C 1.39990 * 118.34753 * 0.50617 * 4 3 2 6 6 C 1.47518 * 120.59866 * 179.75103 * 5 4 3 7 7 O 1.21594 * 120.00332 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00069 * 359.97438 * 6 5 4 9 9 C 1.46494 * 120.00211 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47333 * 34.99743 * 9 8 6 11 11 C 1.53007 * 109.47241 * 154.99917 * 9 8 6 12 12 N 1.46503 * 109.46721 * 304.99950 * 11 9 8 13 13 C 1.36941 * 119.99661 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99704 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99982 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99688 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46889 * 60.00133 * 17 15 13 19 19 H 1.48503 * 109.46803 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47008 * 300.00121 * 17 15 13 21 21 C 1.53002 * 109.47227 * 274.99439 * 9 8 6 22 22 C 1.53005 * 109.47275 * 179.97438 * 21 9 8 23 23 C 1.53000 * 109.47130 * 180.02562 * 22 21 9 24 24 C 1.52998 * 109.47179 * 60.00278 * 23 22 21 25 25 C 1.53001 * 109.47340 * 300.00064 * 24 23 22 26 26 C 1.53000 * 109.47037 * 59.99848 * 25 24 23 27 27 C 1.40281 * 118.80458 * 359.73783 * 5 4 3 28 28 O 1.35425 * 119.79840 * 179.97438 * 27 5 4 29 29 N 1.31876 * 119.40618 * 180.27214 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.72855 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72956 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72937 * 1 2 3 33 33 H 1.08000 * 120.26943 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.82473 * 180.24712 * 4 3 2 35 35 H 0.97005 * 120.00102 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.47128 * 64.99848 * 11 9 8 37 37 H 1.09004 * 109.47160 * 185.00105 * 11 9 8 38 38 H 0.96993 * 119.99951 * 359.97438 * 12 11 9 39 39 H 0.97002 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.47628 * 300.00168 * 21 9 8 41 41 H 1.08997 * 109.47224 * 300.00776 * 22 21 9 42 42 H 1.08999 * 109.46701 * 60.00267 * 22 21 9 43 43 H 1.09002 * 109.46993 * 300.00516 * 23 22 21 44 44 H 1.08998 * 109.46681 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47236 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46927 * 59.99732 * 24 23 22 47 47 H 1.09002 * 109.46796 * 300.00647 * 25 24 23 48 48 H 1.08992 * 109.47602 * 179.97438 * 25 24 23 49 49 H 1.08999 * 109.47308 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.47409 * 60.00222 * 26 25 24 51 51 H 0.96700 * 114.00496 * 270.01937 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0052 5 6 4.2356 -0.0249 -0.0006 6 6 5.7097 -0.0815 -0.0010 7 8 6.2769 -1.1570 -0.0056 8 7 6.4278 1.0590 0.0038 9 6 7.8917 1.0028 0.0039 10 1 8.2227 0.1500 -0.5888 11 6 8.4517 2.2921 -0.6005 12 7 7.8751 2.4980 -1.9314 13 6 8.2314 3.5950 -2.6697 14 1 8.9371 4.3085 -2.2705 15 6 7.6848 3.7904 -3.9306 16 7 6.8244 2.9210 -4.4167 17 14 8.1703 5.2871 -4.9373 18 1 9.6350 5.2660 -5.1806 19 1 7.4526 5.2633 -6.2372 20 1 7.8095 6.5214 -4.1946 21 6 8.3961 0.8521 1.4405 22 6 9.9250 0.7928 1.4407 23 6 10.4294 0.6414 2.8772 24 6 9.8690 -0.6477 3.4813 25 6 8.3402 -0.5886 3.4812 26 6 7.8358 -0.4372 2.0446 27 6 3.4758 -1.2041 -0.0057 28 8 4.0991 -2.4064 -0.0119 29 7 2.1545 -1.1488 -0.0055 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8876 -0.5180 32 1 -0.3633 0.8924 -0.5096 33 1 1.6411 2.1375 0.0004 34 1 4.1223 2.1344 0.0093 35 1 5.9754 1.9171 0.0070 36 1 8.1954 3.1353 0.0409 37 1 9.5358 2.2141 -0.6822 38 1 7.2417 1.8570 -2.2900 39 1 6.4427 3.0574 -5.2980 40 1 8.0652 1.7049 2.0333 41 1 10.2556 -0.0602 0.8481 42 1 10.3242 1.7110 1.0099 43 1 10.0987 1.4942 3.4701 44 1 11.5186 0.5996 2.8773 45 1 10.2287 -0.7558 4.5045 46 1 10.1996 -1.5005 2.8883 47 1 8.0096 0.2643 4.0740 48 1 7.9409 -1.5071 3.9111 49 1 6.7467 -0.3946 2.0445 50 1 8.1664 -1.2899 1.4517 51 1 4.2799 -2.7512 -0.8970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568346245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:12 Heat of formation + Delta-G solvation = -50.923029 kcal Electronic energy + Delta-G solvation = -31744.475665 eV Core-core repulsion = 27643.420697 eV Total energy + Delta-G solvation = -4101.054968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.90065 -39.65759 -37.95299 -37.13888 -35.65782 -33.75377 -33.20208 -31.67285 -31.38974 -30.60200 -30.44930 -28.10895 -26.88106 -24.08424 -23.32442 -23.08895 -22.55326 -21.71169 -20.90943 -20.04585 -19.60059 -18.61166 -17.71101 -17.04497 -16.86356 -15.95734 -15.63314 -15.47017 -14.84482 -14.53670 -14.41384 -14.15969 -14.10319 -13.93407 -13.90709 -13.60964 -13.29713 -13.19044 -13.01943 -12.65498 -12.40830 -12.33716 -12.22416 -11.98773 -11.88745 -11.67308 -11.58368 -11.25434 -10.97318 -10.88378 -10.87047 -10.65656 -10.42144 -10.22364 -10.05859 -9.96755 -9.90742 -9.81035 -9.70100 -9.31427 -8.94785 -8.88852 -8.55059 -7.00532 -5.82703 -3.12529 0.56444 1.05266 2.97802 3.31397 3.39193 3.44289 3.44934 3.53875 3.82023 4.42367 4.51803 4.57784 4.74672 4.79480 4.84589 4.89113 4.95178 5.18130 5.25262 5.27535 5.35648 5.39285 5.43942 5.46401 5.49864 5.60216 5.64463 5.68640 5.73976 5.77465 5.80913 5.84277 5.93484 5.94945 6.00885 6.11962 6.17044 6.24959 6.32626 6.34469 6.35575 6.45559 6.47980 6.54942 6.64844 6.73636 6.94833 7.51882 7.63205 7.76931 7.85199 8.35086 8.50968 9.47020 10.02818 10.38275 11.39414 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006025 B = 0.004687 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4646.538656 B = 5973.127358 C = 9862.955230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.169 3.831 3 C -0.191 4.191 4 C -0.020 4.020 5 C -0.204 4.204 6 C 0.564 3.436 7 O -0.521 6.521 8 N -0.706 5.706 9 C 0.145 3.855 10 H 0.088 0.912 11 C 0.144 3.856 12 N -0.731 5.731 13 C -0.243 4.243 14 H 0.070 0.930 15 C -0.010 4.010 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.091 4.091 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.104 4.104 27 C 0.372 3.628 28 O -0.461 6.461 29 N -0.512 5.512 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.400 0.600 36 H 0.023 0.977 37 H 0.037 0.963 38 H 0.385 0.615 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.055 0.945 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 -5.046 14.282 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.211 4.211 4 C -0.046 4.046 5 C -0.211 4.211 6 C 0.350 3.650 7 O -0.399 6.399 8 N -0.356 5.356 9 C 0.040 3.960 10 H 0.106 0.894 11 C 0.016 3.984 12 N -0.376 5.376 13 C -0.375 4.375 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.111 4.111 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.141 4.141 27 C 0.192 3.808 28 O -0.268 6.268 29 N -0.233 5.233 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.236 0.764 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.219 0.781 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.309 -6.434 14.791 17.320 hybrid contribution 0.343 1.821 -1.293 2.259 sum -5.966 -4.614 13.498 15.462 Atomic orbital electron populations 1.20810 0.88326 1.03927 1.03389 1.21223 0.96959 0.87287 0.91407 1.21894 0.94570 0.99544 1.05053 1.21810 0.94591 0.97364 0.90859 1.21189 0.95414 0.94241 1.10239 1.17669 0.85683 0.84677 0.77020 1.90793 1.71478 1.28430 1.49162 1.45842 1.07309 1.08325 1.74169 1.21327 0.78589 1.00533 0.95562 0.89377 1.21022 0.96668 0.92680 0.88034 1.42351 1.53072 1.28326 1.13860 1.19167 1.20943 1.00146 0.97196 0.91208 1.24732 0.99597 0.98692 0.97638 1.69655 1.33276 1.36575 1.18416 0.86282 0.77882 0.82496 0.79585 1.21240 1.21705 1.21270 1.21525 0.95435 0.98425 0.95739 1.21605 0.94707 1.02472 0.96470 1.21507 0.99691 0.97687 0.96493 1.21531 0.95861 0.98128 1.00072 1.21561 0.95450 1.00988 0.97697 1.21607 1.00102 0.97619 0.94784 1.19102 0.86007 0.85132 0.90545 1.84682 1.76402 1.31957 1.33796 1.67105 1.09452 1.30408 1.16295 0.89993 0.90163 0.90135 0.83841 0.83698 0.76419 0.95928 0.94513 0.78053 0.93449 0.91393 0.91783 0.91219 0.92274 0.92294 0.92722 0.92107 0.92676 0.92587 0.92319 0.91129 0.73513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.16 36.01 0.37 -0.48 16 2 C 0.17 1.97 6.78 -82.53 -0.56 1.41 16 3 C -0.19 -2.07 9.71 -39.50 -0.38 -2.45 16 4 C -0.02 -0.25 9.64 -38.89 -0.37 -0.63 16 5 C -0.20 -3.05 5.90 -104.69 -0.62 -3.66 16 6 C 0.56 9.27 6.12 -12.48 -0.08 9.20 16 7 O -0.52 -9.61 12.31 -16.49 -0.20 -9.81 16 8 N -0.71 -11.04 4.36 -54.85 -0.24 -11.28 16 9 C 0.14 2.35 1.99 -67.93 -0.14 2.21 16 10 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 11 C 0.14 2.69 5.31 -4.04 -0.02 2.67 16 12 N -0.73 -17.48 5.43 -59.90 -0.33 -17.81 16 13 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 14 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 16 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 17 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.09 -1.25 1.96 -90.61 -0.18 -1.42 16 22 C -0.11 -1.45 4.85 -26.73 -0.13 -1.58 16 23 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 24 C -0.12 -1.29 5.92 -26.73 -0.16 -1.44 16 25 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 26 C -0.10 -1.46 3.73 -26.73 -0.10 -1.56 16 27 C 0.37 5.66 7.77 -16.61 -0.13 5.53 16 28 O -0.46 -6.90 11.66 -39.74 -0.46 -7.36 16 29 N -0.51 -7.31 10.28 -9.21 -0.09 -7.41 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.47 8.07 -51.93 -0.42 0.06 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.15 1.60 6.52 -52.49 -0.34 1.26 16 35 H 0.40 5.92 6.70 -40.82 -0.27 5.64 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.70 6.71 -51.93 -0.35 0.35 16 38 H 0.39 9.90 7.33 -40.82 -0.30 9.60 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.89 6.54 -51.93 -0.34 0.55 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.92 5.77 -51.93 -0.30 0.62 16 50 H 0.07 1.13 7.52 -51.93 -0.39 0.74 16 51 H 0.41 4.63 9.06 45.56 0.41 5.04 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -32.61 400.74 -9.96 -42.57 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -7.31 Total: 17.18 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.06 Total: -2.27 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.07 Total: -63.10 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.67 Total: -17.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.61 -9.96 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568346245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.354 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds