Wall clock time and date at job start Wed Apr 1 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38353 * 119.40797 * 2 1 4 4 C 1.38336 * 119.45933 * 179.75322 * 3 2 1 5 5 C 1.39990 * 118.34753 * 0.50617 * 4 3 2 6 6 C 1.47518 * 120.59866 * 179.75103 * 5 4 3 7 7 O 1.21594 * 120.00332 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00069 * 359.97438 * 6 5 4 9 9 C 1.46494 * 120.00211 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47333 * 34.99743 * 9 8 6 11 11 C 1.53007 * 109.47241 * 154.99917 * 9 8 6 12 12 N 1.46503 * 109.46721 * 304.99950 * 11 9 8 13 13 C 1.36941 * 119.99661 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99704 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99982 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99688 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46889 * 60.00133 * 17 15 13 19 19 H 1.48503 * 109.46803 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47008 * 300.00121 * 17 15 13 21 21 C 1.53002 * 109.47227 * 274.99439 * 9 8 6 22 22 C 1.53005 * 109.47275 * 179.97438 * 21 9 8 23 23 C 1.53000 * 109.47130 * 180.02562 * 22 21 9 24 24 C 1.52998 * 109.47179 * 60.00278 * 23 22 21 25 25 C 1.53001 * 109.47340 * 300.00064 * 24 23 22 26 26 C 1.53000 * 109.47037 * 59.99848 * 25 24 23 27 27 C 1.40281 * 118.80458 * 359.73783 * 5 4 3 28 28 O 1.35425 * 119.79840 * 179.97438 * 27 5 4 29 29 N 1.31876 * 119.40618 * 180.27214 * 2 1 3 30 30 H 1.09002 * 109.47152 * 269.72855 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72956 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72937 * 1 2 3 33 33 H 1.08000 * 120.26943 * 0.02562 * 3 2 1 34 34 H 1.07997 * 120.82473 * 180.24712 * 4 3 2 35 35 H 0.97005 * 120.00102 * 359.97438 * 8 6 5 36 36 H 1.08993 * 109.47128 * 64.99848 * 11 9 8 37 37 H 1.09004 * 109.47160 * 185.00105 * 11 9 8 38 38 H 0.96993 * 119.99951 * 359.97438 * 12 11 9 39 39 H 0.97002 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.47628 * 300.00168 * 21 9 8 41 41 H 1.08997 * 109.47224 * 300.00776 * 22 21 9 42 42 H 1.08999 * 109.46701 * 60.00267 * 22 21 9 43 43 H 1.09002 * 109.46993 * 300.00516 * 23 22 21 44 44 H 1.08998 * 109.46681 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47236 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46927 * 59.99732 * 24 23 22 47 47 H 1.09002 * 109.46796 * 300.00647 * 25 24 23 48 48 H 1.08992 * 109.47602 * 179.97438 * 25 24 23 49 49 H 1.08999 * 109.47308 * 180.02562 * 26 25 24 50 50 H 1.08997 * 109.47409 * 60.00222 * 26 25 24 51 51 H 0.96700 * 114.00496 * 270.01937 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0052 5 6 4.2356 -0.0249 -0.0006 6 6 5.7097 -0.0815 -0.0010 7 8 6.2769 -1.1570 -0.0056 8 7 6.4278 1.0590 0.0038 9 6 7.8917 1.0028 0.0039 10 1 8.2227 0.1500 -0.5888 11 6 8.4517 2.2921 -0.6005 12 7 7.8751 2.4980 -1.9314 13 6 8.2314 3.5950 -2.6697 14 1 8.9371 4.3085 -2.2705 15 6 7.6848 3.7904 -3.9306 16 7 6.8244 2.9210 -4.4167 17 14 8.1703 5.2871 -4.9373 18 1 9.6350 5.2660 -5.1806 19 1 7.4526 5.2633 -6.2372 20 1 7.8095 6.5214 -4.1946 21 6 8.3961 0.8521 1.4405 22 6 9.9250 0.7928 1.4407 23 6 10.4294 0.6414 2.8772 24 6 9.8690 -0.6477 3.4813 25 6 8.3402 -0.5886 3.4812 26 6 7.8358 -0.4372 2.0446 27 6 3.4758 -1.2041 -0.0057 28 8 4.0991 -2.4064 -0.0119 29 7 2.1545 -1.1488 -0.0055 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8876 -0.5180 32 1 -0.3633 0.8924 -0.5096 33 1 1.6411 2.1375 0.0004 34 1 4.1223 2.1344 0.0093 35 1 5.9754 1.9171 0.0070 36 1 8.1954 3.1353 0.0409 37 1 9.5358 2.2141 -0.6822 38 1 7.2417 1.8570 -2.2900 39 1 6.4427 3.0574 -5.2980 40 1 8.0652 1.7049 2.0333 41 1 10.2556 -0.0602 0.8481 42 1 10.3242 1.7110 1.0099 43 1 10.0987 1.4942 3.4701 44 1 11.5186 0.5996 2.8773 45 1 10.2287 -0.7558 4.5045 46 1 10.1996 -1.5005 2.8883 47 1 8.0096 0.2643 4.0740 48 1 7.9409 -1.5071 3.9111 49 1 6.7467 -0.3946 2.0445 50 1 8.1664 -1.2899 1.4517 51 1 4.2799 -2.7512 -0.8970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568346245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:11 Heat of formation + Delta-G solvation = -73.764179 kcal Electronic energy + Delta-G solvation = -31745.466131 eV Core-core repulsion = 27643.420697 eV Total energy + Delta-G solvation = -4102.045435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.00723 -40.82818 -39.08621 -38.22517 -37.15281 -35.36034 -34.36963 -32.88465 -32.60316 -32.04115 -31.51219 -29.11319 -28.32153 -25.70187 -24.54442 -24.07347 -23.71627 -22.97475 -22.10322 -21.34923 -20.63992 -19.72315 -19.30595 -18.53941 -18.01080 -17.14923 -16.91051 -16.59408 -16.44692 -15.79723 -15.50737 -15.36794 -15.21985 -15.14950 -14.93829 -14.83807 -14.80617 -14.50402 -14.16362 -13.78337 -13.56217 -13.27870 -13.18544 -13.05869 -13.05535 -12.86855 -12.82102 -12.66455 -12.62005 -12.42941 -12.11403 -11.98835 -11.85243 -11.77457 -11.42040 -11.18788 -11.07213 -10.99660 -10.95005 -10.79726 -10.44330 -9.98369 -9.75629 -8.99647 -7.93036 -5.22499 -0.47324 0.06039 1.49311 1.51547 1.57470 1.83460 2.10842 2.46212 2.56927 2.76202 3.41086 3.47912 3.58284 3.66839 3.70478 3.84336 3.86657 3.95674 4.09169 4.16729 4.28482 4.29967 4.41444 4.46914 4.50255 4.58742 4.64480 4.67626 4.68069 4.72564 4.79107 4.80234 4.91161 4.92187 5.01337 5.04888 5.12090 5.15866 5.20459 5.28767 5.30803 5.34553 5.42458 5.45997 5.49746 5.52891 5.57026 5.67875 6.27062 6.47308 6.56474 6.80493 7.23501 7.34945 8.07957 8.32280 9.29583 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006025 B = 0.004687 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4646.538656 B = 5973.127358 C = 9862.955230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.165 3.835 3 C -0.182 4.182 4 C -0.024 4.024 5 C -0.227 4.227 6 C 0.562 3.438 7 O -0.550 6.550 8 N -0.702 5.702 9 C 0.155 3.845 10 H 0.058 0.942 11 C 0.148 3.852 12 N -0.742 5.742 13 C -0.244 4.244 14 H 0.079 0.921 15 C -0.070 4.070 16 N -0.967 5.967 17 Si 0.970 3.030 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.274 1.274 21 C -0.081 4.081 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.094 4.094 27 C 0.355 3.645 28 O -0.476 6.476 29 N -0.532 5.532 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.182 0.818 34 H 0.158 0.842 35 H 0.405 0.595 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.373 0.627 39 H 0.249 0.751 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.039 0.961 50 H 0.044 0.956 51 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -2.926 15.886 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.027 3.973 3 C -0.201 4.201 4 C -0.050 4.050 5 C -0.234 4.234 6 C 0.349 3.651 7 O -0.429 6.429 8 N -0.352 5.352 9 C 0.050 3.950 10 H 0.076 0.924 11 C 0.021 3.979 12 N -0.385 5.385 13 C -0.375 4.375 14 H 0.097 0.903 15 C -0.262 4.262 16 N -0.618 5.618 17 Si 0.800 3.200 18 H -0.208 1.208 19 H -0.226 1.226 20 H -0.200 1.200 21 C -0.101 4.101 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.132 4.132 27 C 0.175 3.825 28 O -0.286 6.286 29 N -0.253 5.253 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.199 0.801 34 H 0.175 0.825 35 H 0.242 0.758 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.205 0.795 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -6.696 -4.294 16.435 18.259 hybrid contribution 0.414 1.137 -1.760 2.136 sum -6.282 -3.157 14.675 16.272 Atomic orbital electron populations 1.20955 0.85369 1.05101 1.04763 1.21999 0.98860 0.86852 0.89584 1.22316 0.93850 1.00857 1.03064 1.22051 0.95680 0.96809 0.90437 1.21116 0.94340 0.95385 1.12524 1.17957 0.86546 0.84306 0.76292 1.90768 1.72232 1.29374 1.50562 1.45766 1.07009 1.08462 1.74011 1.21140 0.79046 0.98055 0.96741 0.92386 1.21136 0.96594 0.94165 0.86011 1.42515 1.53029 1.27438 1.15513 1.19582 1.20040 1.00544 0.97363 0.90337 1.25495 1.00240 1.01505 0.98998 1.69820 1.34966 1.38547 1.18453 0.85263 0.77398 0.79712 0.77666 1.20798 1.22577 1.20028 1.21442 0.96284 0.98585 0.93748 1.21605 0.93625 1.01992 0.97994 1.21490 1.00515 0.97978 0.94909 1.21524 0.94756 0.97931 1.01165 1.21539 0.96445 1.01491 0.95879 1.21449 0.98849 0.96752 0.96129 1.19272 0.86642 0.85099 0.91467 1.84631 1.76711 1.32382 1.34841 1.67178 1.08912 1.31980 1.17225 0.88285 0.90491 0.87480 0.80057 0.82454 0.75831 0.94329 0.94134 0.79459 0.94188 0.90144 0.92968 0.91145 0.91224 0.90904 0.90708 0.92872 0.91560 0.92587 0.94224 0.93728 0.72518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.16 71.24 0.72 -0.64 16 2 C 0.17 3.58 6.78 42.58 0.29 3.87 16 3 C -0.18 -3.55 9.71 22.32 0.22 -3.33 16 4 C -0.02 -0.59 9.64 22.72 0.22 -0.37 16 5 C -0.23 -6.99 5.90 -19.91 -0.12 -7.11 16 6 C 0.56 19.44 6.12 86.69 0.53 19.97 16 7 O -0.55 -21.71 12.31 16.81 0.21 -21.51 16 8 N -0.70 -22.58 4.36 -445.71 -1.94 -24.52 16 9 C 0.16 5.16 1.99 45.00 0.09 5.25 16 10 H 0.06 2.29 7.58 -2.39 -0.02 2.28 16 11 C 0.15 5.46 5.31 86.38 0.46 5.92 16 12 N -0.74 -35.67 5.43 -343.43 -1.87 -37.54 16 13 C -0.24 -12.93 9.99 84.03 0.84 -12.09 16 14 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 15 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 16 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 17 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C -0.08 -2.18 1.96 -10.79 -0.02 -2.20 16 22 C -0.11 -2.78 4.85 30.60 0.15 -2.63 16 23 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 24 C -0.12 -2.32 5.92 30.59 0.18 -2.13 16 25 C -0.12 -2.66 5.92 30.59 0.18 -2.47 16 26 C -0.09 -2.71 3.73 30.60 0.11 -2.59 16 27 C 0.35 11.23 7.77 85.13 0.66 11.89 16 28 O -0.48 -15.29 11.66 -66.39 -0.77 -16.07 16 29 N -0.53 -15.23 10.28 -296.06 -3.04 -18.27 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 0.85 8.07 -2.38 -0.02 0.83 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.16 3.32 6.52 -2.91 -0.02 3.30 16 35 H 0.41 12.04 6.70 -92.70 -0.62 11.42 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.50 6.71 -2.39 -0.02 1.49 16 38 H 0.37 19.66 7.33 -92.71 -0.68 18.98 16 39 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.70 6.54 -2.39 -0.02 1.69 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.04 1.28 5.77 -2.39 -0.01 1.27 16 50 H 0.04 1.50 7.52 -2.39 -0.02 1.48 16 51 H 0.41 10.54 9.06 -74.06 -0.67 9.87 16 Total: -1.00 -71.70 400.74 -0.95 -72.65 By element: Atomic # 1 Polarization: 51.02 SS G_CDS: -1.00 Total: 50.02 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 5.16 Total: 5.94 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -6.57 Total: -137.65 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.57 Total: -37.57 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.70 -0.95 -72.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568346245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.116 kcal (2) G-P(sol) polarization free energy of solvation -71.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds