Wall clock time and date at job start Wed Apr 1 2020 04:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35423 * 117.00536 * 2 1 4 4 N 1.32236 * 119.79833 * 0.02562 * 3 2 1 5 5 C 1.31878 * 121.80237 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.40710 * 179.97438 * 5 4 3 7 7 C 1.38362 * 121.18762 * 0.02562 * 5 4 3 8 8 C 1.38331 * 119.45253 * 359.73970 * 7 5 4 9 9 C 1.39991 * 118.35329 * 0.50523 * 8 7 5 10 10 C 1.47523 * 120.59956 * 179.78128 * 9 8 7 11 11 O 1.21592 * 120.00412 * 129.45053 * 10 9 8 12 12 N 1.34779 * 119.99675 * 309.44932 * 10 9 8 13 13 C 1.46922 * 120.63003 * 4.17309 * 12 10 9 14 14 C 1.53195 * 108.77481 * 233.62613 * 13 12 10 15 15 C 1.53042 * 109.31207 * 305.36796 * 14 13 12 16 16 C 1.53041 * 109.53877 * 61.36393 * 15 14 13 17 17 H 1.08997 * 109.49528 * 58.58813 * 16 15 14 18 18 C 1.53000 * 109.49610 * 178.68082 * 16 15 14 19 19 C 1.46930 * 120.62768 * 184.19264 * 12 10 9 20 20 H 1.08997 * 109.58389 * 246.30038 * 19 12 10 21 21 C 1.52999 * 109.58655 * 6.58575 * 19 12 10 22 22 N 1.46504 * 109.46912 * 283.77632 * 21 19 12 23 23 C 1.36932 * 119.99917 * 185.38255 * 22 21 19 24 24 H 1.08008 * 120.00034 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00419 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00351 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99630 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47386 * 90.00028 * 27 25 23 29 29 H 1.48501 * 109.47110 * 209.99930 * 27 25 23 30 30 H 1.48507 * 109.47185 * 329.99926 * 27 25 23 31 31 H 1.08991 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46743 * 300.00127 * 1 2 3 33 33 H 1.08998 * 109.46961 * 59.99812 * 1 2 3 34 34 H 1.08996 * 109.47023 * 90.00460 * 6 5 4 35 35 H 1.09005 * 109.47117 * 210.00120 * 6 5 4 36 36 H 1.09000 * 109.47046 * 330.00040 * 6 5 4 37 37 H 1.07995 * 120.27316 * 179.97438 * 7 5 4 38 38 H 1.08007 * 120.82758 * 180.25127 * 8 7 5 39 39 H 1.08998 * 109.58846 * 353.41580 * 13 12 10 40 40 H 1.09002 * 109.58784 * 113.84473 * 13 12 10 41 41 H 1.08999 * 109.49348 * 65.32195 * 14 13 12 42 42 H 1.09004 * 109.49548 * 185.41618 * 14 13 12 43 43 H 1.09000 * 109.45696 * 181.38698 * 15 14 13 44 44 H 1.08994 * 109.45942 * 301.35349 * 15 14 13 45 45 H 1.08996 * 109.47005 * 179.83627 * 18 16 15 46 46 H 1.09001 * 109.47312 * 299.84186 * 18 16 15 47 47 H 1.08997 * 109.46774 * 59.83913 * 18 16 15 48 48 H 1.09000 * 109.46693 * 163.78058 * 21 19 12 49 49 H 1.08992 * 109.47191 * 43.77853 * 21 19 12 50 50 H 0.97004 * 119.99728 * 5.38174 * 22 21 19 51 51 H 0.97001 * 119.99905 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3131 0.0005 5 6 1.8773 3.5083 0.0010 6 6 1.0002 4.7338 0.0010 7 6 3.2529 3.6574 0.0005 8 6 4.0589 2.5332 0.0049 9 6 3.4451 1.2751 -0.0011 10 6 4.2570 0.0434 -0.0016 11 8 4.0300 -0.8349 0.8081 12 7 5.2505 -0.1083 -0.8996 13 6 5.5966 0.9799 -1.8240 14 6 5.5638 0.4389 -3.2569 15 6 6.4770 -0.7852 -3.3568 16 6 5.9702 -1.8801 -2.4153 17 1 4.9464 -2.1433 -2.6812 18 6 6.8645 -3.1152 -2.5402 19 6 6.0077 -1.3654 -0.9730 20 1 7.0404 -1.1879 -0.6729 21 6 5.3738 -2.4010 -0.0421 22 7 5.7324 -2.0951 1.3450 23 6 5.3696 -2.9508 2.3506 24 1 4.8195 -3.8515 2.1211 25 6 5.7097 -2.6613 3.6649 26 7 5.3614 -3.4840 4.6314 27 14 6.6618 -1.1039 4.0618 28 1 5.7097 0.0048 4.3254 29 1 7.5026 -1.3308 5.2646 30 1 7.5301 -0.7476 2.9109 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 0.7884 5.0291 1.0286 35 1 1.5127 5.5474 -0.5125 36 1 0.0652 4.5114 -0.5132 37 1 3.6936 4.6434 0.0006 38 1 5.1351 2.6238 0.0087 39 1 4.8739 1.7894 -1.7224 40 1 6.5965 1.3491 -1.5958 41 1 4.5438 0.1539 -3.5148 42 1 5.9117 1.2095 -3.9448 43 1 6.4745 -1.1573 -4.3813 44 1 7.4918 -0.5050 -3.0747 45 1 6.5050 -3.8936 -1.8674 46 1 6.8376 -3.4810 -3.5666 47 1 7.8883 -2.8506 -2.2756 48 1 5.7397 -3.3946 -0.3013 49 1 4.2898 -2.3729 -0.1519 50 1 6.2268 -1.2864 1.5511 51 1 5.5995 -3.2819 5.5497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698945010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:27 Heat of formation + Delta-G solvation = 20.086843 kcal Electronic energy + Delta-G solvation = -33032.438209 eV Core-core repulsion = 28934.462459 eV Total energy + Delta-G solvation = -4097.975749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.10508 -39.90157 -38.04492 -37.22285 -34.98140 -33.65507 -32.74186 -32.08743 -31.85197 -30.52219 -28.62067 -27.53486 -26.56461 -26.06353 -24.11172 -23.13473 -22.79383 -22.03520 -21.04956 -20.32711 -19.35532 -18.14463 -17.52440 -16.86370 -16.68141 -16.10242 -15.46854 -15.16059 -14.99818 -14.65182 -14.41891 -14.33799 -14.18892 -14.10209 -13.94268 -13.46466 -13.18826 -12.98326 -12.76578 -12.69744 -12.60191 -12.48571 -12.38657 -12.20453 -12.01639 -11.76668 -11.67685 -11.59863 -11.19046 -11.03873 -11.02804 -10.70735 -10.67034 -10.58536 -10.13672 -9.90962 -9.88866 -9.76464 -9.33128 -8.70559 -8.62261 -8.30290 -8.11399 -6.77066 -5.49307 -2.75528 0.78804 1.16675 3.01856 3.18462 3.21728 3.51383 3.57184 3.59351 3.71051 4.01621 4.52452 4.60772 4.72955 4.79115 4.84093 4.88475 4.91923 4.97192 5.05795 5.21422 5.26297 5.29481 5.31333 5.33709 5.34713 5.38636 5.52318 5.64430 5.66251 5.68049 5.71101 5.72267 5.79620 5.82453 5.84326 5.87101 5.90540 5.93269 6.05883 6.11644 6.24399 6.27986 6.33750 6.48955 6.61899 6.91588 7.22600 7.26962 7.69019 7.82526 8.27045 8.68976 8.78404 9.51081 10.24722 10.46282 11.71023 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008151 B = 0.005162 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.287236 B = 5422.615601 C = 7162.251538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.282 6.282 3 C 0.368 3.632 4 N -0.543 5.543 5 C 0.178 3.822 6 C -0.105 4.105 7 C -0.219 4.219 8 C -0.016 4.016 9 C -0.193 4.193 10 C 0.530 3.470 11 O -0.429 6.429 12 N -0.612 5.612 13 C 0.101 3.899 14 C -0.133 4.133 15 C -0.113 4.113 16 C -0.098 4.098 17 H 0.074 0.926 18 C -0.147 4.147 19 C 0.145 3.855 20 H 0.069 0.931 21 C 0.162 3.838 22 N -0.727 5.727 23 C -0.204 4.204 24 H 0.086 0.914 25 C -0.005 4.005 26 N -0.946 5.946 27 Si 0.883 3.117 28 H -0.290 1.290 29 H -0.296 1.296 30 H -0.283 1.283 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.029 0.971 49 H 0.049 0.951 50 H 0.355 0.645 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 16.719 -19.818 26.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.187 6.187 3 C 0.188 3.812 4 N -0.268 5.268 5 C 0.040 3.960 6 C -0.162 4.162 7 C -0.240 4.240 8 C -0.042 4.042 9 C -0.199 4.199 10 C 0.314 3.686 11 O -0.297 6.297 12 N -0.349 5.349 13 C -0.022 4.022 14 C -0.172 4.172 15 C -0.150 4.150 16 C -0.118 4.118 17 H 0.093 0.907 18 C -0.205 4.205 19 C 0.042 3.958 20 H 0.087 0.913 21 C 0.035 3.965 22 N -0.371 5.371 23 C -0.335 4.335 24 H 0.104 0.896 25 C -0.199 4.199 26 N -0.596 5.596 27 Si 0.715 3.285 28 H -0.217 1.217 29 H -0.223 1.223 30 H -0.210 1.210 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.046 0.954 49 H 0.066 0.934 50 H 0.187 0.813 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.037 15.631 -19.214 25.276 hybrid contribution 1.329 1.538 0.438 2.079 sum -3.708 17.169 -18.777 25.712 Atomic orbital electron populations 1.22898 0.77273 1.03302 1.02020 1.86413 1.22691 1.23410 1.86147 1.19683 0.87966 0.84782 0.88745 1.67194 1.40374 0.98209 1.21072 1.21055 0.92068 0.91899 0.90934 1.20772 0.99248 0.92804 1.03410 1.21668 0.93881 0.99672 1.08733 1.21612 1.00679 0.90335 0.91570 1.20139 0.91809 0.95834 1.12117 1.17918 0.81308 0.86941 0.82421 1.91288 1.65230 1.38695 1.34483 1.47877 1.35697 1.15208 1.36112 1.21892 1.00879 0.90274 0.89189 1.21911 1.00747 0.98168 0.96350 1.21576 0.99061 0.95044 0.99335 1.21454 1.00505 0.95305 0.94525 0.90746 1.21858 0.99572 0.97474 1.01551 1.21593 0.95307 0.83827 0.95048 0.91322 1.20965 0.98439 0.93166 0.83928 1.42515 1.66843 1.25603 1.02090 1.19007 1.27321 1.01275 0.85897 0.89642 1.24527 1.01946 0.97832 0.95571 1.69697 1.53007 1.37730 0.99215 0.86537 0.79924 0.85171 0.76842 1.21675 1.22273 1.20979 0.88356 0.92221 0.92545 0.90007 0.90339 0.90390 0.84233 0.83772 0.89750 0.91732 0.91637 0.91153 0.91863 0.91849 0.91324 0.92825 0.92604 0.95377 0.93370 0.81301 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 101.05 1.05 1.57 16 2 O -0.28 -4.98 9.58 -25.37 -0.24 -5.22 16 3 C 0.37 6.14 7.49 -16.61 -0.12 6.02 16 4 N -0.54 -7.79 9.11 -9.21 -0.08 -7.88 16 5 C 0.18 2.04 6.78 -82.52 -0.56 1.48 16 6 C -0.11 -0.78 10.16 36.01 0.37 -0.42 16 7 C -0.22 -2.29 9.71 -39.50 -0.38 -2.67 16 8 C -0.02 -0.21 7.49 -38.89 -0.29 -0.50 16 9 C -0.19 -3.16 5.04 -104.69 -0.53 -3.69 16 10 C 0.53 10.12 6.68 -12.47 -0.08 10.04 16 11 O -0.43 -10.46 10.59 -2.13 -0.02 -10.49 16 12 N -0.61 -9.64 2.97 -166.45 -0.49 -10.13 16 13 C 0.10 1.13 5.42 -3.71 -0.02 1.11 16 14 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 15 C -0.11 -1.13 5.17 -26.69 -0.14 -1.27 16 16 C -0.10 -1.26 2.34 -90.50 -0.21 -1.47 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.15 -1.76 9.00 37.16 0.33 -1.43 16 19 C 0.15 2.40 2.36 -67.60 -0.16 2.24 16 20 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 21 C 0.16 3.48 4.87 -4.04 -0.02 3.46 16 22 N -0.73 -19.08 3.14 -59.91 -0.19 -19.26 16 23 C -0.20 -6.32 10.30 -15.06 -0.16 -6.48 16 24 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 26 N -0.95 -32.00 13.97 55.49 0.78 -31.23 16 27 Si 0.88 24.52 27.74 -169.99 -4.71 19.80 16 28 H -0.29 -8.17 7.11 56.52 0.40 -7.77 16 29 H -0.30 -8.18 7.11 56.52 0.40 -7.78 16 30 H -0.28 -7.39 6.52 56.52 0.37 -7.02 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.14 1.52 7.10 -52.48 -0.37 1.14 16 39 H 0.08 0.87 4.51 -51.93 -0.23 0.64 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.03 0.60 6.07 -51.93 -0.31 0.29 16 49 H 0.05 1.16 6.07 -51.93 -0.32 0.84 16 50 H 0.35 9.34 5.34 -40.82 -0.22 9.12 16 51 H 0.25 8.20 8.31 -40.82 -0.34 7.87 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -38.82 394.41 -8.34 -47.16 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.13 Total: 5.00 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.18 Total: 6.30 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: 0.01 Total: -68.50 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.27 Total: -15.71 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.71 Total: 19.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.82 -8.34 -47.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698945010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.249 kcal (2) G-P(sol) polarization free energy of solvation -38.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds