Wall clock time and date at job start Wed Apr 1 2020 04:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35423 * 117.00536 * 2 1 4 4 N 1.32236 * 119.79833 * 0.02562 * 3 2 1 5 5 C 1.31878 * 121.80237 * 179.97438 * 4 3 2 6 6 C 1.50705 * 119.40710 * 179.97438 * 5 4 3 7 7 C 1.38362 * 121.18762 * 0.02562 * 5 4 3 8 8 C 1.38331 * 119.45253 * 359.73970 * 7 5 4 9 9 C 1.39991 * 118.35329 * 0.50523 * 8 7 5 10 10 C 1.47523 * 120.59956 * 179.78128 * 9 8 7 11 11 O 1.21592 * 120.00412 * 129.45053 * 10 9 8 12 12 N 1.34779 * 119.99675 * 309.44932 * 10 9 8 13 13 C 1.46922 * 120.63003 * 4.17309 * 12 10 9 14 14 C 1.53195 * 108.77481 * 233.62613 * 13 12 10 15 15 C 1.53042 * 109.31207 * 305.36796 * 14 13 12 16 16 C 1.53041 * 109.53877 * 61.36393 * 15 14 13 17 17 H 1.08997 * 109.49528 * 58.58813 * 16 15 14 18 18 C 1.53000 * 109.49610 * 178.68082 * 16 15 14 19 19 C 1.46930 * 120.62768 * 184.19264 * 12 10 9 20 20 H 1.08997 * 109.58389 * 246.30038 * 19 12 10 21 21 C 1.52999 * 109.58655 * 6.58575 * 19 12 10 22 22 N 1.46504 * 109.46912 * 283.77632 * 21 19 12 23 23 C 1.36932 * 119.99917 * 185.38255 * 22 21 19 24 24 H 1.08008 * 120.00034 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00419 * 179.97438 * 23 22 21 26 26 N 1.31616 * 120.00351 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99630 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47386 * 90.00028 * 27 25 23 29 29 H 1.48501 * 109.47110 * 209.99930 * 27 25 23 30 30 H 1.48507 * 109.47185 * 329.99926 * 27 25 23 31 31 H 1.08991 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46743 * 300.00127 * 1 2 3 33 33 H 1.08998 * 109.46961 * 59.99812 * 1 2 3 34 34 H 1.08996 * 109.47023 * 90.00460 * 6 5 4 35 35 H 1.09005 * 109.47117 * 210.00120 * 6 5 4 36 36 H 1.09000 * 109.47046 * 330.00040 * 6 5 4 37 37 H 1.07995 * 120.27316 * 179.97438 * 7 5 4 38 38 H 1.08007 * 120.82758 * 180.25127 * 8 7 5 39 39 H 1.08998 * 109.58846 * 353.41580 * 13 12 10 40 40 H 1.09002 * 109.58784 * 113.84473 * 13 12 10 41 41 H 1.08999 * 109.49348 * 65.32195 * 14 13 12 42 42 H 1.09004 * 109.49548 * 185.41618 * 14 13 12 43 43 H 1.09000 * 109.45696 * 181.38698 * 15 14 13 44 44 H 1.08994 * 109.45942 * 301.35349 * 15 14 13 45 45 H 1.08996 * 109.47005 * 179.83627 * 18 16 15 46 46 H 1.09001 * 109.47312 * 299.84186 * 18 16 15 47 47 H 1.08997 * 109.46774 * 59.83913 * 18 16 15 48 48 H 1.09000 * 109.46693 * 163.78058 * 21 19 12 49 49 H 1.08992 * 109.47191 * 43.77853 * 21 19 12 50 50 H 0.97004 * 119.99728 * 5.38174 * 22 21 19 51 51 H 0.97001 * 119.99905 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3131 0.0005 5 6 1.8773 3.5083 0.0010 6 6 1.0002 4.7338 0.0010 7 6 3.2529 3.6574 0.0005 8 6 4.0589 2.5332 0.0049 9 6 3.4451 1.2751 -0.0011 10 6 4.2570 0.0434 -0.0016 11 8 4.0300 -0.8349 0.8081 12 7 5.2505 -0.1083 -0.8996 13 6 5.5966 0.9799 -1.8240 14 6 5.5638 0.4389 -3.2569 15 6 6.4770 -0.7852 -3.3568 16 6 5.9702 -1.8801 -2.4153 17 1 4.9464 -2.1433 -2.6812 18 6 6.8645 -3.1152 -2.5402 19 6 6.0077 -1.3654 -0.9730 20 1 7.0404 -1.1879 -0.6729 21 6 5.3738 -2.4010 -0.0421 22 7 5.7324 -2.0951 1.3450 23 6 5.3696 -2.9508 2.3506 24 1 4.8195 -3.8515 2.1211 25 6 5.7097 -2.6613 3.6649 26 7 5.3614 -3.4840 4.6314 27 14 6.6618 -1.1039 4.0618 28 1 5.7097 0.0048 4.3254 29 1 7.5026 -1.3308 5.2646 30 1 7.5301 -0.7476 2.9109 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 0.7884 5.0291 1.0286 35 1 1.5127 5.5474 -0.5125 36 1 0.0652 4.5114 -0.5132 37 1 3.6936 4.6434 0.0006 38 1 5.1351 2.6238 0.0087 39 1 4.8739 1.7894 -1.7224 40 1 6.5965 1.3491 -1.5958 41 1 4.5438 0.1539 -3.5148 42 1 5.9117 1.2095 -3.9448 43 1 6.4745 -1.1573 -4.3813 44 1 7.4918 -0.5050 -3.0747 45 1 6.5050 -3.8936 -1.8674 46 1 6.8376 -3.4810 -3.5666 47 1 7.8883 -2.8506 -2.2756 48 1 5.7397 -3.3946 -0.3013 49 1 4.2898 -2.3729 -0.1519 50 1 6.2268 -1.2864 1.5511 51 1 5.5995 -3.2819 5.5497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698945010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:26 Heat of formation + Delta-G solvation = -8.566630 kcal Electronic energy + Delta-G solvation = -33033.680716 eV Core-core repulsion = 28934.462459 eV Total energy + Delta-G solvation = -4099.218257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.23768 -41.09606 -39.13819 -38.47532 -36.68789 -35.12325 -33.84000 -33.63327 -32.78674 -32.34589 -29.60764 -28.84274 -27.69415 -27.18094 -25.63291 -24.20981 -24.05633 -23.43183 -22.39111 -21.46642 -20.60570 -19.63541 -19.21406 -18.00826 -17.91539 -17.24319 -16.71144 -16.68076 -16.22942 -16.02200 -15.87284 -15.45762 -15.36707 -15.15399 -15.02538 -14.77410 -14.68983 -14.21143 -14.14234 -13.91383 -13.83864 -13.51923 -13.45120 -13.32488 -13.13276 -13.01783 -12.93549 -12.84596 -12.71868 -12.53113 -12.15535 -12.08554 -11.94174 -11.83275 -11.69650 -11.58671 -11.16709 -10.97486 -10.91678 -10.82130 -10.00274 -9.55504 -9.40909 -8.97172 -7.96463 -5.19611 -0.22667 0.18958 1.25172 1.34159 1.39513 1.80265 2.03763 2.06012 2.50284 2.64446 3.09786 3.35287 3.52216 3.62137 3.70512 3.82726 3.90394 3.94090 4.06116 4.19161 4.21631 4.25472 4.29079 4.29869 4.31258 4.37793 4.51963 4.60059 4.60896 4.69333 4.75642 4.79150 4.80551 4.85558 4.92698 4.95222 4.97273 5.02294 5.09403 5.14250 5.22225 5.26848 5.27492 5.42527 5.47829 5.51981 5.77536 5.79039 6.16665 6.26914 6.50989 6.74968 7.15493 7.42477 7.95007 8.14638 9.27522 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008151 B = 0.005162 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.287236 B = 5422.615601 C = 7162.251538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.321 6.321 3 C 0.342 3.658 4 N -0.555 5.555 5 C 0.171 3.829 6 C -0.102 4.102 7 C -0.201 4.201 8 C -0.012 4.012 9 C -0.226 4.226 10 C 0.530 3.470 11 O -0.505 6.505 12 N -0.607 5.607 13 C 0.093 3.907 14 C -0.128 4.128 15 C -0.106 4.106 16 C -0.092 4.092 17 H 0.059 0.941 18 C -0.144 4.144 19 C 0.151 3.849 20 H 0.073 0.927 21 C 0.165 3.835 22 N -0.723 5.723 23 C -0.194 4.194 24 H 0.044 0.956 25 C -0.076 4.076 26 N -0.995 5.995 27 Si 0.957 3.043 28 H -0.296 1.296 29 H -0.290 1.290 30 H -0.254 1.254 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.187 0.813 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.025 0.975 49 H 0.018 0.982 50 H 0.356 0.644 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 21.670 -22.736 31.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.227 6.227 3 C 0.163 3.837 4 N -0.281 5.281 5 C 0.034 3.966 6 C -0.159 4.159 7 C -0.221 4.221 8 C -0.038 4.038 9 C -0.232 4.232 10 C 0.316 3.684 11 O -0.378 6.378 12 N -0.343 5.343 13 C -0.028 4.028 14 C -0.166 4.166 15 C -0.144 4.144 16 C -0.111 4.111 17 H 0.077 0.923 18 C -0.202 4.202 19 C 0.048 3.952 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.366 5.366 23 C -0.326 4.326 24 H 0.062 0.938 25 C -0.266 4.266 26 N -0.649 5.649 27 Si 0.786 3.214 28 H -0.223 1.223 29 H -0.217 1.217 30 H -0.179 1.179 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.204 0.796 38 H 0.185 0.815 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.082 0.918 48 H 0.043 0.957 49 H 0.036 0.964 50 H 0.189 0.811 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.982 20.627 -22.242 30.481 hybrid contribution 0.539 0.062 1.232 1.346 sum -2.443 20.689 -21.010 29.588 Atomic orbital electron populations 1.23026 0.75788 1.04122 1.02540 1.86358 1.24550 1.25108 1.86702 1.19908 0.88437 0.85066 0.90256 1.67264 1.40561 0.98665 1.21603 1.21941 0.93655 0.92014 0.89005 1.20920 0.98900 0.91691 1.04389 1.22165 0.93150 1.00918 1.05861 1.21928 1.02042 0.89256 0.90544 1.20099 0.91581 0.96156 1.15374 1.18455 0.81240 0.87024 0.81672 1.91244 1.67543 1.41400 1.37641 1.48025 1.34418 1.15954 1.35884 1.22281 1.02347 0.89094 0.89091 1.21907 1.00103 0.98882 0.95724 1.21565 0.99521 0.93888 0.99381 1.21416 1.00212 0.96894 0.92628 0.92297 1.21838 0.99547 0.96363 1.02457 1.21464 0.94571 0.83129 0.96027 0.90927 1.20951 0.97083 0.95117 0.82941 1.42414 1.66579 1.24707 1.02884 1.18956 1.25681 1.00437 0.87480 0.93832 1.25338 1.04105 1.01859 0.95269 1.69892 1.55211 1.40219 0.99547 0.85344 0.78477 0.80059 0.77480 1.22338 1.21698 1.17885 0.87486 0.92575 0.90976 0.89131 0.86924 0.90511 0.79591 0.81470 0.88699 0.89263 0.93016 0.87564 0.89716 0.90506 0.93997 0.90324 0.91763 0.95724 0.96409 0.81128 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.11 10.38 113.37 1.18 2.29 16 2 O -0.32 -12.23 9.58 -80.09 -0.77 -13.00 16 3 C 0.34 11.73 7.49 85.13 0.64 12.37 16 4 N -0.56 -15.58 9.11 -296.05 -2.70 -18.28 16 5 C 0.17 3.42 6.78 42.58 0.29 3.71 16 6 C -0.10 -1.11 10.16 71.24 0.72 -0.39 16 7 C -0.20 -3.33 9.71 22.32 0.22 -3.11 16 8 C -0.01 -0.28 7.49 22.72 0.17 -0.11 16 9 C -0.23 -7.39 5.04 -19.91 -0.10 -7.49 16 10 C 0.53 20.80 6.68 86.69 0.58 21.38 16 11 O -0.50 -26.24 10.59 3.08 0.03 -26.21 16 12 N -0.61 -18.69 2.97 -798.77 -2.37 -21.06 16 13 C 0.09 1.76 5.42 86.36 0.47 2.23 16 14 C -0.13 -1.94 6.08 30.67 0.19 -1.76 16 15 C -0.11 -1.72 5.17 30.62 0.16 -1.56 16 16 C -0.09 -2.25 2.34 -10.72 -0.03 -2.27 16 17 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 18 C -0.14 -3.30 9.00 71.98 0.65 -2.65 16 19 C 0.15 4.97 2.36 44.97 0.11 5.07 16 20 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 21 C 0.17 7.54 4.87 86.38 0.42 7.96 16 22 N -0.72 -39.55 3.14 -343.45 -1.08 -40.62 16 23 C -0.19 -12.70 10.30 84.03 0.87 -11.84 16 24 H 0.04 3.14 8.06 -2.91 -0.02 3.12 16 25 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 26 N -1.00 -70.56 13.97 21.65 0.30 -70.26 16 27 Si 0.96 52.10 27.74 68.60 1.90 54.00 16 28 H -0.30 -16.31 7.11 99.48 0.71 -15.61 16 29 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 30 H -0.25 -12.42 6.52 99.48 0.65 -11.78 16 31 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 33 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.49 8.07 -2.38 -0.02 0.48 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.17 2.81 7.10 -2.91 -0.02 2.79 16 39 H 0.09 1.63 4.51 -2.39 -0.01 1.62 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.04 1.17 6.33 -2.39 -0.02 1.15 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.03 1.14 6.07 -2.39 -0.01 1.13 16 49 H 0.02 0.95 6.07 -2.39 -0.01 0.93 16 50 H 0.36 18.96 5.34 -92.71 -0.50 18.46 16 51 H 0.25 17.02 8.31 -92.71 -0.77 16.25 16 Total: -1.00 -94.17 394.41 2.69 -91.48 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.38 Total: 24.72 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 6.99 Total: 19.23 kcal Atomic # 7 Polarization: -144.37 SS G_CDS: -5.85 Total: -150.22 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.73 Total: -39.21 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 1.90 Total: 54.00 kcal Total: -94.17 2.69 -91.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698945010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.916 kcal (2) G-P(sol) polarization free energy of solvation -94.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds