Wall clock time and date at job start Wed Apr 1 2020 04:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38610 * 119.54878 * 2 1 4 4 C 1.38580 * 119.34901 * 179.72904 * 3 2 1 5 5 C 1.38636 * 118.48840 * 0.53486 * 4 3 2 6 6 C 1.39264 * 119.06336 * 359.49262 * 5 4 3 7 7 C 1.48165 * 119.72493 * 180.27059 * 6 5 4 8 8 O 1.21512 * 119.99915 * 338.57576 * 7 6 5 9 9 N 1.34784 * 119.99868 * 158.56744 * 7 6 5 10 10 C 1.46921 * 120.62800 * 359.97438 * 9 7 6 11 11 C 1.52771 * 109.00513 * 233.57814 * 10 9 7 12 12 C 1.53037 * 109.38218 * 305.58983 * 11 10 9 13 13 O 1.42897 * 109.44680 * 181.25145 * 12 11 10 14 14 C 1.42905 * 114.00043 * 89.94051 * 13 12 11 15 15 C 1.52998 * 109.47370 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47243 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.46975 * 180.02562 * 16 15 14 18 18 C 1.36936 * 119.99935 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99965 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00230 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00174 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99965 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47531 * 89.99918 * 22 20 18 24 24 H 1.48500 * 109.47423 * 210.00286 * 22 20 18 25 25 H 1.48501 * 109.47366 * 329.99947 * 22 20 18 26 26 C 1.53043 * 109.53674 * 61.24204 * 12 11 10 27 27 C 1.46923 * 120.62816 * 180.27242 * 9 7 6 28 28 N 1.31495 * 119.54941 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47202 * 269.97464 * 1 2 3 30 30 H 1.09003 * 109.47206 * 29.97646 * 1 2 3 31 31 H 1.09001 * 109.47094 * 149.97816 * 1 2 3 32 32 H 1.07995 * 120.32352 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.75680 * 180.27650 * 4 3 2 34 34 H 1.08007 * 120.46617 * 179.75906 * 5 4 3 35 35 H 1.08999 * 109.59295 * 353.41198 * 10 9 7 36 36 H 1.09005 * 109.58848 * 113.84451 * 10 9 7 37 37 H 1.08994 * 109.56536 * 185.55495 * 11 10 9 38 38 H 1.08999 * 109.35409 * 65.49992 * 11 10 9 39 39 H 1.09000 * 109.45947 * 301.21894 * 12 11 10 40 40 H 1.08996 * 109.46808 * 299.99972 * 14 13 12 41 41 H 1.08997 * 109.46779 * 59.99938 * 14 13 12 42 42 H 1.09003 * 109.47015 * 300.00105 * 15 14 13 43 43 H 1.09009 * 109.46872 * 59.99653 * 15 14 13 44 44 H 1.08996 * 109.46866 * 300.00143 * 16 15 14 45 45 H 1.08997 * 109.46848 * 60.00187 * 16 15 14 46 46 H 0.96998 * 119.99993 * 359.97438 * 17 16 15 47 47 H 0.97006 * 120.00221 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.49298 * 178.68320 * 26 12 11 49 49 H 1.08992 * 109.52647 * 58.60053 * 26 12 11 50 50 H 1.09003 * 109.58858 * 246.16016 * 27 9 7 51 51 H 1.09000 * 109.58909 * 6.43841 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 0.0057 5 6 4.2333 -0.0198 -0.0001 6 6 3.4821 -1.1924 -0.0007 7 6 4.1692 -2.5051 -0.0008 8 8 5.3190 -2.5890 -0.3848 9 7 3.5189 -3.6061 0.4253 10 6 2.1289 -3.5204 0.8932 11 6 2.0341 -4.1387 2.2870 12 6 2.5992 -5.5605 2.2513 13 8 2.4845 -6.1507 3.5476 14 6 1.2571 -6.8508 3.7610 15 6 1.2442 -7.4387 5.1735 16 6 -0.0697 -8.1888 5.4017 17 7 -0.0822 -8.7512 6.7544 18 6 -1.1644 -9.4702 7.1870 19 1 -2.0088 -9.6223 6.5310 20 6 -1.1761 -10.0035 8.4684 21 7 -2.2165 -10.6942 8.8843 22 14 0.2846 -9.7411 9.6027 23 1 0.0849 -8.4961 10.3872 24 1 0.4060 -10.8956 10.5288 25 1 1.5244 -9.6230 8.7940 26 6 4.0726 -5.5155 1.8402 27 6 4.1889 -4.9137 0.4366 28 7 2.1554 -1.1439 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6485 2.1399 -0.0004 33 1 4.1318 2.1272 0.0103 34 1 5.3126 -0.0608 0.0002 35 1 1.8217 -2.4755 0.9369 36 1 1.4787 -4.0662 0.2094 37 1 0.9912 -4.1696 2.6024 38 1 2.6096 -3.5360 2.9895 39 1 2.0390 -6.1559 1.5303 40 1 0.4208 -6.1611 3.6465 41 1 1.1666 -7.6559 3.0319 42 1 2.0805 -8.1284 5.2876 43 1 1.3350 -6.6337 5.9029 44 1 -0.9061 -7.4994 5.2875 45 1 -0.1599 -8.9937 4.6723 46 1 0.6763 -8.6149 7.3434 47 1 -2.2249 -11.0666 9.7800 48 1 4.4807 -6.5263 1.8377 49 1 4.6294 -4.9001 2.5468 50 1 3.7105 -5.5757 -0.2853 51 1 5.2399 -4.7881 0.1766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717518341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:36 Heat of formation + Delta-G solvation = -23.518727 kcal Electronic energy + Delta-G solvation = -29743.479088 eV Core-core repulsion = 25643.612459 eV Total energy + Delta-G solvation = -4099.866629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44114 -39.91230 -38.65608 -36.83243 -35.31515 -33.62557 -33.55141 -32.56098 -31.63747 -31.33080 -30.02275 -28.34741 -26.25306 -25.21084 -24.12367 -23.68938 -22.67649 -22.10479 -21.44436 -20.95667 -19.80964 -18.08084 -17.50646 -17.20941 -16.75613 -16.52622 -16.28087 -15.88202 -15.72257 -15.04764 -14.86093 -14.78428 -14.41835 -14.34860 -14.12837 -14.05160 -13.73360 -13.62562 -13.13661 -12.97197 -12.84780 -12.80315 -12.74064 -12.48279 -12.44998 -12.23785 -11.59658 -11.58039 -11.49461 -11.03994 -10.95881 -10.75099 -10.70075 -10.64503 -10.60537 -10.47232 -10.11789 -9.75619 -9.58508 -9.57042 -9.28041 -9.03342 -8.88620 -7.22728 -5.75969 -3.11687 0.13231 0.59257 2.24923 2.49534 3.19595 3.39700 3.42858 3.43422 3.47039 3.58799 4.01106 4.14726 4.40130 4.45407 4.48829 4.60788 4.61261 4.68875 4.79664 4.86207 4.96428 4.98423 5.03057 5.07073 5.09357 5.20759 5.22040 5.27110 5.41216 5.43909 5.48043 5.50739 5.53885 5.54333 5.57074 5.65817 5.74442 5.80455 5.84144 5.96951 5.99697 6.01034 6.04236 6.24670 6.30077 6.72214 6.76523 6.93121 7.15640 7.24178 7.70566 8.00069 8.43067 9.22146 9.94666 10.14719 11.42311 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.001728 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.878946 B =16200.194765 C =17081.279191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.123 3.877 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.119 4.119 6 C 0.087 3.913 7 C 0.572 3.428 8 O -0.536 6.536 9 N -0.590 5.590 10 C 0.077 3.923 11 C -0.159 4.159 12 C 0.090 3.910 13 O -0.382 6.382 14 C 0.068 3.932 15 C -0.128 4.128 16 C 0.161 3.839 17 N -0.756 5.756 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.130 4.130 27 C 0.112 3.888 28 N -0.452 5.452 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.027 0.973 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.250 27.021 -23.990 37.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.016 4.016 3 C -0.169 4.169 4 C -0.100 4.100 5 C -0.139 4.139 6 C -0.050 4.050 7 C 0.359 3.641 8 O -0.412 6.412 9 N -0.321 5.321 10 C -0.045 4.045 11 C -0.197 4.197 12 C 0.031 3.969 13 O -0.301 6.301 14 C -0.009 4.009 15 C -0.166 4.166 16 C 0.033 3.967 17 N -0.402 5.402 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.169 4.169 27 C -0.010 4.010 28 N -0.165 5.165 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.335 26.057 -24.064 37.236 hybrid contribution 1.136 0.765 0.852 1.613 sum 12.471 26.822 -23.212 37.600 Atomic orbital electron populations 1.20793 0.87924 1.04052 1.03734 1.21518 0.97462 0.88109 0.94496 1.22213 0.95024 0.99530 1.00160 1.21664 0.94478 0.98368 0.95513 1.22079 1.02234 0.91695 0.97923 1.21090 0.89686 0.94118 1.00131 1.17906 0.85281 0.83005 0.77898 1.90788 1.16792 1.85388 1.48254 1.47993 1.14532 1.07314 1.62289 1.22815 0.80828 1.07044 0.93805 1.22424 1.02465 0.97060 0.97761 1.22036 0.96161 0.93015 0.85640 1.87927 1.38883 1.70994 1.32325 1.22496 0.85905 0.94686 0.97792 1.21715 0.99814 1.00307 0.94796 1.20488 0.93476 0.94868 0.87841 1.42689 1.20429 1.65190 1.11899 1.19064 0.95635 1.24781 0.98039 0.89192 1.24680 0.97378 0.99933 0.97243 1.69704 1.29585 1.40192 1.18738 0.86524 0.83226 0.77481 0.81191 1.21029 1.21679 1.20268 1.21969 0.96093 1.02481 0.96325 1.21680 0.99789 0.82874 0.96673 1.67378 1.08363 1.28618 1.12144 0.89800 0.90284 0.90007 0.84074 0.83817 0.83475 0.83862 0.91332 0.90221 0.91043 0.92012 0.93264 0.93216 0.91266 0.91282 0.95455 0.95495 0.80569 0.93053 0.89671 0.90639 0.90887 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.17 36.00 0.37 -0.02 16 2 C 0.12 0.75 6.78 -82.60 -0.56 0.19 16 3 C -0.15 -0.69 9.75 -39.32 -0.38 -1.08 16 4 C -0.07 -0.37 10.17 -39.31 -0.40 -0.77 16 5 C -0.12 -0.89 9.63 -39.05 -0.38 -1.26 16 6 C 0.09 0.81 6.46 -83.01 -0.54 0.28 16 7 C 0.57 6.40 7.62 -12.18 -0.09 6.31 16 8 O -0.54 -7.27 15.94 5.36 0.09 -7.18 16 9 N -0.59 -5.82 2.98 -174.04 -0.52 -6.34 16 10 C 0.08 0.67 5.96 -3.93 -0.02 0.64 16 11 C -0.16 -1.50 5.68 -26.83 -0.15 -1.65 16 12 C 0.09 0.93 2.57 -26.69 -0.07 0.86 16 13 O -0.38 -5.09 9.99 -35.23 -0.35 -5.45 16 14 C 0.07 0.90 5.75 37.16 0.21 1.11 16 15 C -0.13 -2.07 5.70 -26.73 -0.15 -2.22 16 16 C 0.16 3.16 6.26 -4.04 -0.03 3.13 16 17 N -0.76 -18.62 5.41 -59.91 -0.32 -18.94 16 18 C -0.25 -7.13 10.47 -15.06 -0.16 -7.28 16 19 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.72 13.97 55.49 0.78 -28.94 16 22 Si 0.89 22.55 27.73 -169.99 -4.71 17.84 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 26 C -0.13 -1.24 5.73 -26.63 -0.15 -1.39 16 27 C 0.11 1.00 6.43 -3.73 -0.02 0.98 16 28 N -0.45 -3.74 6.27 -6.06 -0.04 -3.77 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.14 8.08 -51.93 -0.42 -0.27 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 33 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 34 H 0.15 1.03 7.79 -52.48 -0.41 0.62 16 35 H 0.15 1.24 3.97 -79.61 -0.32 0.92 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 40 H 0.05 0.60 7.84 -51.93 -0.41 0.19 16 41 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.36 8.70 5.53 -40.82 -0.23 8.47 16 47 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.10 0.95 7.00 -51.93 -0.36 0.58 16 LS Contribution 409.60 15.07 6.17 6.17 Total: -1.00 -35.42 409.60 -9.99 -45.41 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.46 Total: 3.38 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.62 Total: -2.17 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.11 Total: -58.00 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.27 Total: -12.63 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.42 -9.99 -45.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.895 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds