Wall clock time and date at job start Wed Apr 1 2020 04:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38610 * 119.54878 * 2 1 4 4 C 1.38580 * 119.34901 * 179.72904 * 3 2 1 5 5 C 1.38636 * 118.48840 * 0.53486 * 4 3 2 6 6 C 1.39264 * 119.06336 * 359.49262 * 5 4 3 7 7 C 1.48165 * 119.72493 * 180.27059 * 6 5 4 8 8 O 1.21512 * 119.99915 * 338.57576 * 7 6 5 9 9 N 1.34784 * 119.99868 * 158.56744 * 7 6 5 10 10 C 1.46921 * 120.62800 * 359.97438 * 9 7 6 11 11 C 1.52771 * 109.00513 * 233.57814 * 10 9 7 12 12 C 1.53037 * 109.38218 * 305.58983 * 11 10 9 13 13 O 1.42897 * 109.44680 * 181.25145 * 12 11 10 14 14 C 1.42905 * 114.00043 * 89.94051 * 13 12 11 15 15 C 1.52998 * 109.47370 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47243 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.46975 * 180.02562 * 16 15 14 18 18 C 1.36936 * 119.99935 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99965 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00230 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00174 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99965 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47531 * 89.99918 * 22 20 18 24 24 H 1.48500 * 109.47423 * 210.00286 * 22 20 18 25 25 H 1.48501 * 109.47366 * 329.99947 * 22 20 18 26 26 C 1.53043 * 109.53674 * 61.24204 * 12 11 10 27 27 C 1.46923 * 120.62816 * 180.27242 * 9 7 6 28 28 N 1.31495 * 119.54941 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47202 * 269.97464 * 1 2 3 30 30 H 1.09003 * 109.47206 * 29.97646 * 1 2 3 31 31 H 1.09001 * 109.47094 * 149.97816 * 1 2 3 32 32 H 1.07995 * 120.32352 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.75680 * 180.27650 * 4 3 2 34 34 H 1.08007 * 120.46617 * 179.75906 * 5 4 3 35 35 H 1.08999 * 109.59295 * 353.41198 * 10 9 7 36 36 H 1.09005 * 109.58848 * 113.84451 * 10 9 7 37 37 H 1.08994 * 109.56536 * 185.55495 * 11 10 9 38 38 H 1.08999 * 109.35409 * 65.49992 * 11 10 9 39 39 H 1.09000 * 109.45947 * 301.21894 * 12 11 10 40 40 H 1.08996 * 109.46808 * 299.99972 * 14 13 12 41 41 H 1.08997 * 109.46779 * 59.99938 * 14 13 12 42 42 H 1.09003 * 109.47015 * 300.00105 * 15 14 13 43 43 H 1.09009 * 109.46872 * 59.99653 * 15 14 13 44 44 H 1.08996 * 109.46866 * 300.00143 * 16 15 14 45 45 H 1.08997 * 109.46848 * 60.00187 * 16 15 14 46 46 H 0.96998 * 119.99993 * 359.97438 * 17 16 15 47 47 H 0.97006 * 120.00221 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.49298 * 178.68320 * 26 12 11 49 49 H 1.08992 * 109.52647 * 58.60053 * 26 12 11 50 50 H 1.09003 * 109.58858 * 246.16016 * 27 9 7 51 51 H 1.09000 * 109.58909 * 6.43841 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2010 0.0057 5 6 4.2333 -0.0198 -0.0001 6 6 3.4821 -1.1924 -0.0007 7 6 4.1692 -2.5051 -0.0008 8 8 5.3190 -2.5890 -0.3848 9 7 3.5189 -3.6061 0.4253 10 6 2.1289 -3.5204 0.8932 11 6 2.0341 -4.1387 2.2870 12 6 2.5992 -5.5605 2.2513 13 8 2.4845 -6.1507 3.5476 14 6 1.2571 -6.8508 3.7610 15 6 1.2442 -7.4387 5.1735 16 6 -0.0697 -8.1888 5.4017 17 7 -0.0822 -8.7512 6.7544 18 6 -1.1644 -9.4702 7.1870 19 1 -2.0088 -9.6223 6.5310 20 6 -1.1761 -10.0035 8.4684 21 7 -2.2165 -10.6942 8.8843 22 14 0.2846 -9.7411 9.6027 23 1 0.0849 -8.4961 10.3872 24 1 0.4060 -10.8956 10.5288 25 1 1.5244 -9.6230 8.7940 26 6 4.0726 -5.5155 1.8402 27 6 4.1889 -4.9137 0.4366 28 7 2.1554 -1.1439 -0.0005 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6485 2.1399 -0.0004 33 1 4.1318 2.1272 0.0103 34 1 5.3126 -0.0608 0.0002 35 1 1.8217 -2.4755 0.9369 36 1 1.4787 -4.0662 0.2094 37 1 0.9912 -4.1696 2.6024 38 1 2.6096 -3.5360 2.9895 39 1 2.0390 -6.1559 1.5303 40 1 0.4208 -6.1611 3.6465 41 1 1.1666 -7.6559 3.0319 42 1 2.0805 -8.1284 5.2876 43 1 1.3350 -6.6337 5.9029 44 1 -0.9061 -7.4994 5.2875 45 1 -0.1599 -8.9937 4.6723 46 1 0.6763 -8.6149 7.3434 47 1 -2.2249 -11.0666 9.7800 48 1 4.4807 -6.5263 1.8377 49 1 4.6294 -4.9001 2.5468 50 1 3.7105 -5.5757 -0.2853 51 1 5.2399 -4.7881 0.1766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717518341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:35 Heat of formation + Delta-G solvation = -46.208845 kcal Electronic energy + Delta-G solvation = -29744.463005 eV Core-core repulsion = 25643.612459 eV Total energy + Delta-G solvation = -4100.850546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.05101 -40.58002 -39.55386 -37.84707 -36.96514 -34.46196 -34.02903 -33.94931 -32.83226 -32.04362 -31.63313 -28.74414 -27.32001 -26.42359 -24.86950 -24.45876 -23.80495 -23.13440 -22.60353 -22.03006 -20.55097 -19.63675 -18.75351 -17.88521 -17.59584 -17.09597 -17.00191 -16.84140 -16.59659 -16.49411 -15.77225 -15.62693 -15.45832 -15.41411 -15.27898 -14.81222 -14.78272 -14.67800 -14.39465 -13.91923 -13.86781 -13.70544 -13.30488 -13.18618 -13.10909 -13.02497 -12.95023 -12.79104 -12.50773 -12.47668 -12.27960 -12.08196 -11.99460 -11.83753 -11.82051 -11.52812 -11.48677 -10.99471 -10.93602 -10.58285 -10.09615 -9.97194 -9.76861 -9.33013 -8.04750 -5.39053 -0.39612 0.16020 1.37886 1.40697 1.48267 1.55085 1.79772 2.47113 2.53512 2.68246 2.92794 3.26496 3.48284 3.64036 3.74889 3.82007 3.85407 3.98014 3.99996 4.05783 4.08261 4.08908 4.24827 4.25569 4.32368 4.33199 4.43647 4.55024 4.56291 4.65215 4.68969 4.72640 4.77295 4.80440 4.81377 4.84513 4.88907 5.05471 5.09224 5.12005 5.13038 5.19834 5.22930 5.28660 5.29659 5.46959 5.72676 5.73123 6.18278 6.18997 6.30016 6.62602 6.95270 7.05297 7.81334 8.00240 9.16411 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.001728 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.878946 B =16200.194765 C =17081.279191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.111 3.889 3 C -0.139 4.139 4 C -0.071 4.071 5 C -0.131 4.131 6 C 0.058 3.942 7 C 0.565 3.435 8 O -0.572 6.572 9 N -0.591 5.591 10 C 0.081 3.919 11 C -0.152 4.152 12 C 0.086 3.914 13 O -0.399 6.399 14 C 0.074 3.926 15 C -0.117 4.117 16 C 0.157 3.843 17 N -0.762 5.762 18 C -0.240 4.240 19 H 0.059 0.941 20 C -0.064 4.064 21 N -0.982 5.982 22 Si 0.957 3.043 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.254 1.254 26 C -0.124 4.124 27 C 0.113 3.887 28 N -0.466 5.466 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.031 0.969 45 H 0.029 0.971 46 H 0.366 0.634 47 H 0.259 0.741 48 H 0.092 0.908 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.608 29.313 -24.714 40.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.029 4.029 3 C -0.159 4.159 4 C -0.096 4.096 5 C -0.152 4.152 6 C -0.077 4.077 7 C 0.353 3.647 8 O -0.452 6.452 9 N -0.321 5.321 10 C -0.041 4.041 11 C -0.190 4.190 12 C 0.029 3.971 13 O -0.319 6.319 14 C -0.003 4.003 15 C -0.155 4.155 16 C 0.031 3.969 17 N -0.408 5.408 18 C -0.370 4.370 19 H 0.077 0.923 20 C -0.256 4.256 21 N -0.632 5.632 22 Si 0.783 3.217 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.179 1.179 26 C -0.162 4.162 27 C -0.009 4.009 28 N -0.180 5.180 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.194 0.806 33 H 0.192 0.808 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.199 0.801 47 H 0.068 0.932 48 H 0.111 0.889 49 H 0.077 0.923 50 H 0.109 0.891 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.703 28.367 -24.825 39.471 hybrid contribution 0.928 0.132 0.978 1.355 sum 12.631 28.500 -23.848 39.249 Atomic orbital electron populations 1.20871 0.86158 1.04886 1.04353 1.22058 0.98695 0.88141 0.93977 1.22638 0.94976 1.00361 0.97897 1.22040 0.94997 0.98420 0.94181 1.22205 1.02199 0.92376 0.98378 1.20925 0.90468 0.93600 1.02754 1.18319 0.85043 0.84011 0.77336 1.90747 1.18301 1.86074 1.50061 1.48127 1.14965 1.07336 1.61712 1.22871 0.80264 1.07476 0.93445 1.22358 1.02516 0.96301 0.97839 1.22205 0.96717 0.93449 0.84769 1.87892 1.38827 1.71247 1.33954 1.22366 0.86464 0.95374 0.96068 1.21527 0.97377 0.99758 0.96824 1.20647 0.95726 0.95123 0.85389 1.42736 1.19251 1.64885 1.13890 1.19064 0.95926 1.24432 0.97624 0.92294 1.25538 1.00636 1.00222 0.99174 1.69881 1.32124 1.41917 1.19275 0.85385 0.80155 0.77276 0.78838 1.20251 1.21975 1.17850 1.21903 0.95619 1.02583 0.96087 1.21703 0.99530 0.82930 0.96759 1.67266 1.07806 1.30028 1.12899 0.89166 0.88035 0.90630 0.80636 0.80751 0.83975 0.83576 0.90208 0.89433 0.92633 0.90490 0.91991 0.92016 0.91611 0.91520 0.95074 0.95249 0.80095 0.93227 0.88913 0.92260 0.89137 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.17 71.23 0.72 0.22 16 2 C 0.11 1.14 6.78 42.70 0.29 1.43 16 3 C -0.14 -0.89 9.75 22.44 0.22 -0.67 16 4 C -0.07 -0.56 10.17 22.45 0.23 -0.33 16 5 C -0.13 -1.94 9.63 22.61 0.22 -1.72 16 6 C 0.06 1.11 6.46 41.89 0.27 1.38 16 7 C 0.56 13.16 7.62 86.88 0.66 13.82 16 8 O -0.57 -16.46 15.94 -3.75 -0.06 -16.52 16 9 N -0.59 -11.70 2.98 -822.84 -2.45 -14.15 16 10 C 0.08 1.33 5.96 86.22 0.51 1.84 16 11 C -0.15 -2.69 5.68 30.53 0.17 -2.52 16 12 C 0.09 1.65 2.57 30.62 0.08 1.73 16 13 O -0.40 -9.93 9.99 -148.98 -1.49 -11.42 16 14 C 0.07 1.78 5.75 71.98 0.41 2.20 16 15 C -0.12 -3.53 5.70 30.59 0.17 -3.36 16 16 C 0.16 5.95 6.26 86.38 0.54 6.49 16 17 N -0.76 -36.64 5.41 -343.46 -1.86 -38.49 16 18 C -0.24 -13.98 10.47 84.03 0.88 -13.10 16 19 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 20 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 21 N -0.98 -63.53 13.97 21.65 0.30 -63.23 16 22 Si 0.96 46.24 27.73 68.60 1.90 48.14 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.25 -11.19 6.52 99.48 0.65 -10.54 16 26 C -0.12 -2.27 5.73 30.66 0.18 -2.10 16 27 C 0.11 2.00 6.43 86.35 0.56 2.55 16 28 N -0.47 -7.39 6.27 -173.08 -1.08 -8.48 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.03 8.08 -2.39 -0.02 0.01 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 34 H 0.14 2.12 7.79 -2.91 -0.02 2.10 16 35 H 0.15 2.43 3.97 -57.05 -0.23 2.20 16 36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.09 1.42 7.84 -2.39 -0.02 1.40 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.26 7.79 -2.39 -0.02 1.24 16 40 H 0.06 1.34 7.84 -2.39 -0.02 1.32 16 41 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.37 16.84 5.53 -92.71 -0.51 16.33 16 47 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 48 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 49 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.09 1.77 7.00 -2.39 -0.02 1.75 16 Total: -1.00 -78.05 409.60 1.98 -76.07 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.13 Total: 23.59 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 6.58 Total: 4.49 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.09 Total: -124.35 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.55 Total: -27.94 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Total: -78.05 1.98 -76.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717518341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.859 kcal (2) G-P(sol) polarization free energy of solvation -78.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds