Wall clock time and date at job start Wed Apr 1 2020 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35419 * 117.00571 * 2 1 4 4 N 1.32241 * 119.80045 * 0.27209 * 3 2 1 5 5 C 1.31877 * 121.80314 * 180.26461 * 4 3 2 6 6 C 1.50700 * 119.40853 * 179.70147 * 5 4 3 7 7 C 1.38356 * 121.18510 * 359.72489 * 5 4 3 8 8 C 1.38336 * 119.45791 * 359.97438 * 7 5 4 9 9 C 1.39986 * 118.34881 * 0.02562 * 8 7 5 10 10 C 1.47529 * 120.59661 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99619 * 139.69880 * 10 9 8 12 12 N 1.34769 * 119.99941 * 319.42109 * 10 9 8 13 13 C 1.46921 * 120.63246 * 354.20094 * 12 10 9 14 14 C 1.53197 * 108.77766 * 233.58332 * 13 12 10 15 15 C 1.53039 * 109.30884 * 305.36423 * 14 13 12 16 16 C 1.53045 * 109.54058 * 61.36692 * 15 14 13 17 17 C 1.46931 * 120.62865 * 173.91371 * 12 10 9 18 18 H 1.08996 * 109.58781 * 246.19863 * 17 12 10 19 19 C 1.52999 * 109.58548 * 6.63500 * 17 12 10 20 20 H 1.09000 * 109.47542 * 50.58076 * 19 17 12 21 21 C 1.53005 * 109.47015 * 170.58150 * 19 17 12 22 22 N 1.46502 * 109.46681 * 290.57714 * 19 17 12 23 23 C 1.36938 * 119.99583 * 165.14608 * 22 19 17 24 24 H 1.07998 * 120.00192 * 359.97438 * 23 22 19 25 25 C 1.38810 * 119.99627 * 180.02562 * 23 22 19 26 26 N 1.31611 * 120.00279 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99869 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47248 * 59.99330 * 27 25 23 29 29 H 1.48495 * 109.47208 * 180.02562 * 27 25 23 30 30 H 1.48508 * 109.46917 * 300.00042 * 27 25 23 31 31 H 1.09005 * 109.46577 * 300.00071 * 1 2 3 32 32 H 1.09000 * 109.46401 * 59.99450 * 1 2 3 33 33 H 1.08999 * 109.47504 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47095 * 270.02184 * 6 5 4 35 35 H 1.08998 * 109.47312 * 30.02453 * 6 5 4 36 36 H 1.08998 * 109.46927 * 150.02491 * 6 5 4 37 37 H 1.08001 * 120.27381 * 180.02562 * 7 5 4 38 38 H 1.08003 * 120.82550 * 180.02562 * 8 7 5 39 39 H 1.09005 * 109.58559 * 353.36976 * 13 12 10 40 40 H 1.08998 * 109.58716 * 113.65254 * 13 12 10 41 41 H 1.09004 * 109.49475 * 65.31262 * 14 13 12 42 42 H 1.08994 * 109.50122 * 185.41296 * 14 13 12 43 43 H 1.09003 * 109.45774 * 181.38326 * 15 14 13 44 44 H 1.08993 * 109.46411 * 301.34083 * 15 14 13 45 45 H 1.08995 * 109.49939 * 58.57895 * 16 15 14 46 46 H 1.09000 * 109.50098 * 178.68273 * 16 15 14 47 47 H 1.09002 * 109.46870 * 299.99614 * 21 19 17 48 48 H 1.09000 * 109.47026 * 59.99610 * 21 19 17 49 49 H 1.08998 * 109.47353 * 179.97438 * 21 19 17 50 50 H 0.96997 * 120.00091 * 345.13955 * 22 19 17 51 51 H 0.97009 * 120.00414 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2065 0.0000 4 7 1.3200 2.3132 0.0054 5 6 1.8773 3.5083 0.0005 6 6 1.0003 4.7338 0.0003 7 6 3.2528 3.6573 -0.0050 8 6 4.0589 2.5331 -0.0048 9 6 3.4450 1.2750 0.0005 10 6 4.2570 0.0433 0.0004 11 8 3.9236 -0.9047 0.6851 12 7 5.3652 -0.0332 -0.7628 13 6 5.7087 1.0496 -1.6945 14 6 5.9126 0.4528 -3.0906 15 6 6.9543 -0.6659 -3.0155 16 6 6.4508 -1.7726 -2.0859 17 6 6.2560 -1.1983 -0.6743 18 1 7.2188 -0.8919 -0.2655 19 6 5.6252 -2.2587 0.2303 20 1 4.5998 -2.4453 -0.0888 21 6 6.4325 -3.5551 0.1362 22 7 5.6265 -1.7821 1.6157 23 6 4.8521 -2.4081 2.5557 24 1 4.2401 -3.2527 2.2758 25 6 4.8530 -1.9561 3.8682 26 7 5.5984 -0.9265 4.2092 27 14 3.7961 -2.8095 5.1505 28 1 4.2043 -4.2330 5.2608 29 1 3.9738 -2.1397 6.4639 30 1 2.3692 -2.7338 4.7459 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7851 5.0264 -1.0274 35 1 0.0670 4.5128 0.5182 36 1 1.5145 5.5487 0.5099 37 1 3.6937 4.6433 -0.0086 38 1 5.1351 2.6238 -0.0086 39 1 4.8981 1.7778 -1.7232 40 1 6.6264 1.5372 -1.3656 41 1 4.9685 0.0470 -3.4542 42 1 6.2614 1.2296 -3.7709 43 1 7.1193 -1.0759 -4.0119 44 1 7.8908 -0.2647 -2.6284 45 1 5.5017 -2.1573 -2.4590 46 1 7.1827 -2.5796 -2.0512 47 1 6.4316 -3.9096 -0.8945 48 1 7.4579 -3.3685 0.4553 49 1 5.9834 -4.3104 0.7811 50 1 6.1760 -1.0233 1.8670 51 1 5.5993 -0.6109 5.1266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731293397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:36 Heat of formation + Delta-G solvation = 23.279742 kcal Electronic energy + Delta-G solvation = -33319.198288 eV Core-core repulsion = 29221.360993 eV Total energy + Delta-G solvation = -4097.837295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.87037 -39.63595 -37.85437 -36.68995 -35.28872 -33.22873 -32.15021 -31.99241 -31.62187 -29.79230 -28.37723 -27.73160 -26.85238 -24.87736 -24.21277 -23.14350 -22.57964 -22.39913 -20.73937 -19.91185 -19.19778 -17.95417 -16.93016 -16.65597 -16.38971 -15.89486 -15.30247 -14.88851 -14.80772 -14.42886 -14.33551 -14.11695 -14.02693 -13.73785 -13.65189 -13.32517 -13.15637 -12.98182 -12.71841 -12.49805 -12.39240 -12.20732 -12.09653 -12.00179 -11.90045 -11.55618 -11.29186 -11.11609 -10.97399 -10.80337 -10.78463 -10.59421 -10.54443 -10.34615 -10.10344 -9.70843 -9.65166 -9.55557 -9.34772 -8.61630 -8.32769 -8.03547 -7.89611 -6.43986 -5.43314 -2.63353 0.99114 1.38320 3.23444 3.45199 3.50554 3.62413 3.65658 3.68052 4.02060 4.20469 4.71721 4.81860 4.84199 4.91124 4.98508 5.11253 5.12372 5.25147 5.26624 5.38125 5.43180 5.44920 5.46198 5.48478 5.49908 5.57369 5.67487 5.75954 5.83425 5.85621 5.87155 5.93254 5.96826 6.01117 6.06849 6.14896 6.16780 6.18303 6.22713 6.44412 6.48441 6.53316 6.56502 6.87042 7.02895 7.15049 7.42557 7.49699 7.90036 8.02110 8.10166 8.74241 9.12802 9.85941 10.42587 10.77938 11.81258 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007813 B = 0.005680 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3582.703583 B = 4928.364975 C = 7178.366340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.278 6.278 3 C 0.366 3.634 4 N -0.546 5.546 5 C 0.174 3.826 6 C -0.104 4.104 7 C -0.221 4.221 8 C -0.014 4.014 9 C -0.184 4.184 10 C 0.529 3.471 11 O -0.413 6.413 12 N -0.613 5.613 13 C 0.104 3.896 14 C -0.133 4.133 15 C -0.118 4.118 16 C -0.128 4.128 17 C 0.151 3.849 18 H 0.065 0.935 19 C 0.178 3.822 20 H 0.067 0.933 21 C -0.169 4.169 22 N -0.695 5.695 23 C -0.178 4.178 24 H 0.063 0.937 25 C -0.027 4.027 26 N -0.946 5.946 27 Si 0.897 3.103 28 H -0.291 1.291 29 H -0.296 1.296 30 H -0.291 1.291 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.036 0.964 48 H 0.042 0.958 49 H 0.054 0.946 50 H 0.376 0.624 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 10.466 -17.673 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.183 6.183 3 C 0.187 3.813 4 N -0.272 5.272 5 C 0.036 3.964 6 C -0.161 4.161 7 C -0.241 4.241 8 C -0.040 4.040 9 C -0.190 4.190 10 C 0.312 3.688 11 O -0.279 6.279 12 N -0.351 5.351 13 C -0.019 4.019 14 C -0.172 4.172 15 C -0.155 4.155 16 C -0.167 4.167 17 C 0.047 3.953 18 H 0.083 0.917 19 C 0.068 3.932 20 H 0.085 0.915 21 C -0.229 4.229 22 N -0.335 5.335 23 C -0.310 4.310 24 H 0.081 0.919 25 C -0.220 4.220 26 N -0.598 5.598 27 Si 0.730 3.270 28 H -0.219 1.219 29 H -0.222 1.222 30 H -0.219 1.219 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.209 0.791 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.113 9.413 -17.128 19.972 hybrid contribution 0.319 0.210 0.944 1.018 sum -3.794 9.624 -16.184 19.208 Atomic orbital electron populations 1.22859 0.77774 1.02998 1.01860 1.86437 1.22218 1.23428 1.86194 1.19707 0.88137 0.84637 0.88866 1.67162 1.40488 0.98244 1.21262 1.20994 0.92061 0.91840 0.91456 1.20745 0.99342 0.92991 1.03017 1.21655 0.93871 0.99667 1.08921 1.21687 1.00727 0.90421 0.91162 1.20195 0.91624 0.95938 1.11262 1.17738 0.81819 0.87561 0.81642 1.91228 1.65760 1.34711 1.36170 1.47691 1.25068 1.20641 1.41749 1.21848 1.00773 0.90249 0.89077 1.21912 0.99904 0.98533 0.96812 1.21512 0.98358 0.96228 0.99447 1.22089 1.01765 0.97810 0.95035 1.21574 0.92790 0.86002 0.94902 0.91723 1.20516 0.97136 0.89604 0.85924 0.91520 1.22584 1.00753 1.00744 0.98863 1.42299 1.51515 1.37033 1.02610 1.18975 1.15991 1.08050 0.88007 0.91928 1.24529 1.01259 0.99034 0.97204 1.69626 1.44784 1.28170 1.17250 0.86376 0.80591 0.78495 0.81523 1.21869 1.22241 1.21869 0.92361 0.92738 0.88631 0.90290 0.90485 0.90414 0.84459 0.83744 0.89978 0.92037 0.91752 0.91410 0.92202 0.91968 0.91629 0.90677 0.94459 0.93836 0.92729 0.79065 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 101.05 1.05 1.63 16 2 O -0.28 -5.32 9.29 -33.18 -0.31 -5.63 16 3 C 0.37 6.71 7.48 -16.61 -0.12 6.59 16 4 N -0.55 -8.71 9.11 -9.21 -0.08 -8.79 16 5 C 0.17 2.27 6.78 -82.53 -0.56 1.71 16 6 C -0.10 -0.92 10.16 36.01 0.37 -0.55 16 7 C -0.22 -2.69 9.71 -39.50 -0.38 -3.07 16 8 C -0.01 -0.21 7.51 -38.89 -0.29 -0.50 16 9 C -0.18 -3.33 5.13 -104.69 -0.54 -3.87 16 10 C 0.53 10.78 6.83 -12.48 -0.09 10.69 16 11 O -0.41 -10.34 9.14 -9.95 -0.09 -10.43 16 12 N -0.61 -10.24 2.97 -166.18 -0.49 -10.74 16 13 C 0.10 1.28 4.93 -3.71 -0.02 1.26 16 14 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 15 C -0.12 -1.25 5.88 -26.69 -0.16 -1.41 16 16 C -0.13 -1.70 4.58 -26.38 -0.12 -1.83 16 17 C 0.15 2.57 2.59 -67.37 -0.17 2.39 16 18 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 19 C 0.18 3.77 1.80 -67.93 -0.12 3.65 16 20 H 0.07 1.59 6.29 -51.93 -0.33 1.26 16 21 C -0.17 -3.22 8.77 37.16 0.33 -2.89 16 22 N -0.69 -18.26 3.22 -53.42 -0.17 -18.43 16 23 C -0.18 -5.28 8.24 -15.06 -0.12 -5.40 16 24 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.03 -0.84 5.50 -17.43 -0.10 -0.93 16 26 N -0.95 -30.38 13.06 55.49 0.72 -29.66 16 27 Si 0.90 24.49 29.55 -169.99 -5.02 19.47 16 28 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 30 H -0.29 -7.99 7.11 56.52 0.40 -7.58 16 31 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.14 1.82 6.70 -52.48 -0.35 1.46 16 39 H 0.08 0.96 4.76 -51.93 -0.25 0.72 16 40 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 0.94 6.70 -51.93 -0.35 0.59 16 47 H 0.04 0.58 6.46 -51.93 -0.34 0.25 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.05 1.14 8.02 -51.93 -0.42 0.72 16 50 H 0.38 10.63 7.72 -40.82 -0.32 10.32 16 51 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -36.44 394.70 -8.93 -45.37 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.22 Total: 6.97 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.22 Total: 5.92 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -0.02 Total: -67.62 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.40 Total: -16.06 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.02 Total: 19.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.44 -8.93 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731293397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.649 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds