Wall clock time and date at job start Wed Apr 1 2020 04:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35428 * 116.99937 * 2 1 4 4 N 1.32235 * 119.80116 * 0.24714 * 3 2 1 5 5 C 1.31881 * 121.79725 * 180.28798 * 4 3 2 6 6 C 1.50704 * 119.40344 * 179.72828 * 5 4 3 7 7 C 1.38349 * 121.18900 * 359.74729 * 5 4 3 8 8 C 1.38337 * 119.45937 * 359.97438 * 7 5 4 9 9 C 1.39987 * 118.34590 * 359.97438 * 8 7 5 10 10 C 1.47526 * 120.59475 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99898 * 217.72739 * 10 9 8 12 12 N 1.34768 * 120.00499 * 37.72525 * 10 9 8 13 13 C 1.46928 * 120.62713 * 5.60949 * 12 10 9 14 14 C 1.53191 * 108.77642 * 126.41606 * 13 12 10 15 15 C 1.53043 * 109.31416 * 54.63253 * 14 13 12 16 16 C 1.53038 * 109.53869 * 298.63783 * 15 14 13 17 17 C 1.46928 * 120.63310 * 185.63254 * 12 10 9 18 18 H 1.09001 * 109.58405 * 113.65859 * 17 12 10 19 19 C 1.52991 * 109.58546 * 353.37140 * 17 12 10 20 20 H 1.09002 * 109.47218 * 310.22862 * 19 17 12 21 21 C 1.53005 * 109.47173 * 190.22831 * 19 17 12 22 22 N 1.46504 * 109.47142 * 70.23271 * 19 17 12 23 23 C 1.36936 * 119.99770 * 197.44106 * 22 19 17 24 24 H 1.07994 * 120.00173 * 359.97438 * 23 22 19 25 25 C 1.38818 * 119.99713 * 180.02562 * 23 22 19 26 26 N 1.31622 * 119.99964 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99772 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47339 * 59.99546 * 27 25 23 29 29 H 1.48498 * 109.46879 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47188 * 299.99285 * 27 25 23 31 31 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46963 * 299.99573 * 1 2 3 33 33 H 1.09004 * 109.46972 * 60.00134 * 1 2 3 34 34 H 1.09001 * 109.47273 * 270.02309 * 6 5 4 35 35 H 1.09005 * 109.47190 * 30.02033 * 6 5 4 36 36 H 1.08999 * 109.47136 * 150.02219 * 6 5 4 37 37 H 1.08004 * 120.27159 * 179.97438 * 7 5 4 38 38 H 1.08002 * 120.82734 * 179.97438 * 8 7 5 39 39 H 1.09006 * 109.58546 * 246.19838 * 13 12 10 40 40 H 1.08995 * 109.58820 * 6.62355 * 13 12 10 41 41 H 1.09004 * 109.49931 * 174.58233 * 14 13 12 42 42 H 1.08998 * 109.49349 * 294.64650 * 14 13 12 43 43 H 1.09002 * 109.45945 * 58.65651 * 15 14 13 44 44 H 1.08995 * 109.45813 * 178.62740 * 15 14 13 45 45 H 1.09005 * 109.49638 * 301.41442 * 16 15 14 46 46 H 1.08994 * 109.49551 * 181.31716 * 16 15 14 47 47 H 1.08996 * 109.47199 * 179.97438 * 21 19 17 48 48 H 1.08994 * 109.47381 * 300.00220 * 21 19 17 49 49 H 1.09002 * 109.46787 * 60.00121 * 21 19 17 50 50 H 0.96994 * 119.99690 * 17.71475 * 22 19 17 51 51 H 0.97000 * 119.99640 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3132 0.0049 5 6 1.8772 3.5084 -0.0005 6 6 1.0000 4.7339 -0.0006 7 6 3.2526 3.6575 -0.0065 8 6 4.0588 2.5333 -0.0062 9 6 3.4450 1.2752 0.0007 10 6 4.2570 0.0436 0.0019 11 8 3.8938 -0.9247 -0.6376 12 7 5.4015 -0.0084 0.7116 13 6 5.7917 1.1064 1.5855 14 6 6.0638 0.5598 2.9905 15 6 7.0994 -0.5638 2.9046 16 6 6.5496 -1.7018 2.0416 17 6 6.2830 -1.1808 0.6259 18 1 7.2244 -0.8965 0.1556 19 6 5.6046 -2.2730 -0.2033 20 1 4.5907 -2.4312 0.1642 21 6 6.4002 -3.5742 -0.0813 22 7 5.5561 -1.8603 -1.6082 23 6 4.6989 -2.4833 -2.4755 24 1 4.0589 -3.2790 -2.1240 25 6 4.6533 -2.0926 -3.8068 26 7 5.4336 -1.1231 -4.2352 27 14 3.4834 -2.9419 -4.9898 28 1 2.0868 -2.7666 -4.5163 29 1 3.6261 -2.3441 -6.3416 30 1 3.8070 -4.3899 -5.0518 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7843 5.0262 -1.0283 35 1 0.0669 4.5128 0.5177 36 1 1.5143 5.5488 0.5087 37 1 3.6934 4.6435 -0.0113 38 1 5.1350 2.6240 -0.0112 39 1 6.6940 1.5777 1.1957 40 1 4.9842 1.8374 1.6278 41 1 6.4466 1.3597 3.6243 42 1 5.1383 0.1706 3.4149 43 1 8.0161 -0.1793 2.4575 44 1 7.3129 -0.9380 3.9058 45 1 5.6197 -2.0703 2.4748 46 1 7.2781 -2.5115 2.0002 47 1 5.9166 -4.3524 -0.6716 48 1 7.4140 -3.4161 -0.4487 49 1 6.4363 -3.8813 0.9640 50 1 6.1339 -1.1485 -1.9248 51 1 5.4014 -0.8499 -5.1654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731293398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:42 Heat of formation + Delta-G solvation = 25.395637 kcal Electronic energy + Delta-G solvation = -33337.080679 eV Core-core repulsion = 29239.335136 eV Total energy + Delta-G solvation = -4097.745543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88228 -39.64250 -37.85023 -36.69517 -35.30526 -33.24973 -32.14780 -31.99427 -31.61826 -29.79441 -28.37261 -27.73354 -26.84511 -24.88335 -24.22116 -23.16310 -22.58636 -22.37430 -20.74096 -19.91800 -19.21014 -17.94214 -16.90780 -16.66063 -16.38925 -15.89185 -15.29539 -14.90934 -14.80795 -14.44473 -14.33251 -14.10764 -14.02609 -13.70520 -13.65048 -13.32704 -13.17306 -12.98250 -12.70146 -12.48463 -12.40124 -12.20299 -12.11066 -11.99790 -11.90460 -11.54555 -11.28647 -11.10899 -10.97189 -10.79543 -10.77805 -10.58688 -10.53543 -10.34674 -10.09243 -9.71208 -9.65733 -9.54202 -9.33679 -8.61009 -8.31585 -8.03394 -7.88583 -6.44451 -5.42304 -2.62623 0.98050 1.37849 3.24291 3.44406 3.51301 3.62840 3.66069 3.68549 4.03869 4.20112 4.70487 4.81756 4.84884 4.91146 4.98410 5.10320 5.11875 5.24392 5.26849 5.38164 5.43909 5.45538 5.46991 5.48530 5.49918 5.56909 5.67555 5.77279 5.83103 5.85052 5.87214 5.93385 5.97301 6.00440 6.06674 6.14798 6.16312 6.18387 6.22670 6.44403 6.47978 6.53611 6.56770 6.87178 7.02760 7.15212 7.43352 7.49542 7.89955 8.03605 8.10303 8.75196 9.13399 9.86984 10.43330 10.78893 11.82346 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.005760 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.658852 B = 4859.556316 C = 7174.628393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.276 6.276 3 C 0.368 3.632 4 N -0.547 5.547 5 C 0.175 3.825 6 C -0.104 4.104 7 C -0.222 4.222 8 C -0.016 4.016 9 C -0.186 4.186 10 C 0.529 3.471 11 O -0.412 6.412 12 N -0.613 5.613 13 C 0.102 3.898 14 C -0.134 4.134 15 C -0.118 4.118 16 C -0.128 4.128 17 C 0.150 3.850 18 H 0.064 0.936 19 C 0.177 3.823 20 H 0.070 0.930 21 C -0.170 4.170 22 N -0.696 5.696 23 C -0.175 4.175 24 H 0.063 0.937 25 C -0.028 4.028 26 N -0.947 5.947 27 Si 0.897 3.103 28 H -0.291 1.291 29 H -0.296 1.296 30 H -0.291 1.291 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.053 0.947 48 H 0.042 0.958 49 H 0.036 0.964 50 H 0.376 0.624 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 11.145 17.381 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.180 6.180 3 C 0.188 3.812 4 N -0.272 5.272 5 C 0.037 3.963 6 C -0.161 4.161 7 C -0.242 4.242 8 C -0.041 4.041 9 C -0.192 4.192 10 C 0.313 3.687 11 O -0.278 6.278 12 N -0.351 5.351 13 C -0.022 4.022 14 C -0.172 4.172 15 C -0.156 4.156 16 C -0.167 4.167 17 C 0.047 3.953 18 H 0.082 0.918 19 C 0.067 3.933 20 H 0.087 0.913 21 C -0.230 4.230 22 N -0.336 5.336 23 C -0.307 4.307 24 H 0.081 0.919 25 C -0.221 4.221 26 N -0.600 5.600 27 Si 0.730 3.270 28 H -0.219 1.219 29 H -0.223 1.223 30 H -0.219 1.219 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.209 0.791 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.410 10.084 16.890 19.964 hybrid contribution 0.275 0.192 -0.942 1.000 sum -3.135 10.276 15.948 19.229 Atomic orbital electron populations 1.22862 0.77805 1.03024 1.01829 1.86460 1.22177 1.23323 1.86082 1.19719 0.88154 0.84654 0.88651 1.67171 1.40471 0.98242 1.21339 1.21001 0.92063 0.91853 0.91339 1.20752 0.99173 0.92905 1.03288 1.21653 0.93877 0.99662 1.09053 1.21734 1.00773 0.90467 0.91163 1.20213 0.91649 0.95906 1.11446 1.17755 0.81762 0.87732 0.81429 1.91233 1.66671 1.33353 1.36576 1.47683 1.22516 1.18742 1.46134 1.21934 1.00434 0.89869 0.89965 1.21919 0.99830 0.98609 0.96841 1.21514 0.98253 0.96067 0.99723 1.22019 1.01527 0.97774 0.95392 1.21493 0.92914 0.85991 0.94916 0.91784 1.20529 0.96940 0.89455 0.86333 0.91283 1.22604 1.00766 1.00924 0.98719 1.42299 1.45726 1.42711 1.02825 1.18969 1.12083 1.10878 0.88766 0.91933 1.24529 1.00678 0.99764 0.97148 1.69631 1.43044 1.32417 1.14866 0.86375 0.81307 0.78576 0.80731 1.21888 1.22271 1.21897 0.88614 0.92730 0.92390 0.90131 0.90555 0.90469 0.84463 0.83621 0.92001 0.89754 0.91407 0.91754 0.91969 0.92202 0.91652 0.90633 0.92758 0.93867 0.94464 0.79084 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 101.05 1.05 1.63 16 2 O -0.28 -5.32 9.20 -34.67 -0.32 -5.64 16 3 C 0.37 6.77 7.48 -16.61 -0.12 6.64 16 4 N -0.55 -8.73 9.11 -9.21 -0.08 -8.81 16 5 C 0.17 2.28 6.78 -82.53 -0.56 1.72 16 6 C -0.10 -0.91 10.16 36.01 0.37 -0.55 16 7 C -0.22 -2.68 9.71 -39.50 -0.38 -3.07 16 8 C -0.02 -0.23 7.48 -38.89 -0.29 -0.52 16 9 C -0.19 -3.36 5.23 -104.69 -0.55 -3.91 16 10 C 0.53 10.78 6.92 -12.48 -0.09 10.69 16 11 O -0.41 -10.30 8.89 -11.41 -0.10 -10.40 16 12 N -0.61 -10.23 2.97 -166.44 -0.49 -10.72 16 13 C 0.10 1.24 4.86 -3.71 -0.02 1.22 16 14 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 15 C -0.12 -1.25 5.88 -26.69 -0.16 -1.41 16 16 C -0.13 -1.71 4.52 -26.61 -0.12 -1.83 16 17 C 0.15 2.56 2.60 -67.60 -0.18 2.38 16 18 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 19 C 0.18 3.75 1.80 -67.93 -0.12 3.63 16 20 H 0.07 1.64 6.24 -51.93 -0.32 1.31 16 21 C -0.17 -3.23 8.77 37.16 0.33 -2.90 16 22 N -0.70 -18.28 3.33 -53.42 -0.18 -18.46 16 23 C -0.17 -5.18 8.18 -15.06 -0.12 -5.30 16 24 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.03 -0.87 5.50 -17.43 -0.10 -0.97 16 26 N -0.95 -30.46 13.06 55.49 0.72 -29.73 16 27 Si 0.90 24.54 29.55 -169.99 -5.02 19.51 16 28 H -0.29 -8.00 7.11 56.52 0.40 -7.60 16 29 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 30 H -0.29 -7.79 7.11 56.52 0.40 -7.38 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 37 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.15 1.80 6.39 -52.49 -0.34 1.46 16 39 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.08 0.98 4.58 -51.93 -0.24 0.74 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.94 6.69 -51.93 -0.35 0.60 16 47 H 0.05 1.13 8.09 -51.93 -0.42 0.71 16 48 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.04 0.58 6.45 -51.93 -0.33 0.25 16 50 H 0.38 10.63 7.73 -40.82 -0.32 10.31 16 51 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -36.45 393.92 -8.96 -45.41 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.19 Total: 6.98 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.23 Total: 5.92 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.03 Total: -67.72 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.42 Total: -16.04 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.02 Total: 19.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.45 -8.96 -45.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731293398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.806 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds