Wall clock time and date at job start Wed Apr 1 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35428 * 116.99937 * 2 1 4 4 N 1.32235 * 119.80116 * 0.24714 * 3 2 1 5 5 C 1.31881 * 121.79725 * 180.28798 * 4 3 2 6 6 C 1.50704 * 119.40344 * 179.72828 * 5 4 3 7 7 C 1.38349 * 121.18900 * 359.74729 * 5 4 3 8 8 C 1.38337 * 119.45937 * 359.97438 * 7 5 4 9 9 C 1.39987 * 118.34590 * 359.97438 * 8 7 5 10 10 C 1.47526 * 120.59475 * 180.02562 * 9 8 7 11 11 O 1.21595 * 119.99898 * 217.72739 * 10 9 8 12 12 N 1.34768 * 120.00499 * 37.72525 * 10 9 8 13 13 C 1.46928 * 120.62713 * 5.60949 * 12 10 9 14 14 C 1.53191 * 108.77642 * 126.41606 * 13 12 10 15 15 C 1.53043 * 109.31416 * 54.63253 * 14 13 12 16 16 C 1.53038 * 109.53869 * 298.63783 * 15 14 13 17 17 C 1.46928 * 120.63310 * 185.63254 * 12 10 9 18 18 H 1.09001 * 109.58405 * 113.65859 * 17 12 10 19 19 C 1.52991 * 109.58546 * 353.37140 * 17 12 10 20 20 H 1.09002 * 109.47218 * 310.22862 * 19 17 12 21 21 C 1.53005 * 109.47173 * 190.22831 * 19 17 12 22 22 N 1.46504 * 109.47142 * 70.23271 * 19 17 12 23 23 C 1.36936 * 119.99770 * 197.44106 * 22 19 17 24 24 H 1.07994 * 120.00173 * 359.97438 * 23 22 19 25 25 C 1.38818 * 119.99713 * 180.02562 * 23 22 19 26 26 N 1.31622 * 119.99964 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99772 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47339 * 59.99546 * 27 25 23 29 29 H 1.48498 * 109.46879 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47188 * 299.99285 * 27 25 23 31 31 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46963 * 299.99573 * 1 2 3 33 33 H 1.09004 * 109.46972 * 60.00134 * 1 2 3 34 34 H 1.09001 * 109.47273 * 270.02309 * 6 5 4 35 35 H 1.09005 * 109.47190 * 30.02033 * 6 5 4 36 36 H 1.08999 * 109.47136 * 150.02219 * 6 5 4 37 37 H 1.08004 * 120.27159 * 179.97438 * 7 5 4 38 38 H 1.08002 * 120.82734 * 179.97438 * 8 7 5 39 39 H 1.09006 * 109.58546 * 246.19838 * 13 12 10 40 40 H 1.08995 * 109.58820 * 6.62355 * 13 12 10 41 41 H 1.09004 * 109.49931 * 174.58233 * 14 13 12 42 42 H 1.08998 * 109.49349 * 294.64650 * 14 13 12 43 43 H 1.09002 * 109.45945 * 58.65651 * 15 14 13 44 44 H 1.08995 * 109.45813 * 178.62740 * 15 14 13 45 45 H 1.09005 * 109.49638 * 301.41442 * 16 15 14 46 46 H 1.08994 * 109.49551 * 181.31716 * 16 15 14 47 47 H 1.08996 * 109.47199 * 179.97438 * 21 19 17 48 48 H 1.08994 * 109.47381 * 300.00220 * 21 19 17 49 49 H 1.09002 * 109.46787 * 60.00121 * 21 19 17 50 50 H 0.96994 * 119.99690 * 17.71475 * 22 19 17 51 51 H 0.97000 * 119.99640 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2067 0.0000 4 7 1.3198 2.3132 0.0049 5 6 1.8772 3.5084 -0.0005 6 6 1.0000 4.7339 -0.0006 7 6 3.2526 3.6575 -0.0065 8 6 4.0588 2.5333 -0.0062 9 6 3.4450 1.2752 0.0007 10 6 4.2570 0.0436 0.0019 11 8 3.8938 -0.9247 -0.6376 12 7 5.4015 -0.0084 0.7116 13 6 5.7917 1.1064 1.5855 14 6 6.0638 0.5598 2.9905 15 6 7.0994 -0.5638 2.9046 16 6 6.5496 -1.7018 2.0416 17 6 6.2830 -1.1808 0.6259 18 1 7.2244 -0.8965 0.1556 19 6 5.6046 -2.2730 -0.2033 20 1 4.5907 -2.4312 0.1642 21 6 6.4002 -3.5742 -0.0813 22 7 5.5561 -1.8603 -1.6082 23 6 4.6989 -2.4833 -2.4755 24 1 4.0589 -3.2790 -2.1240 25 6 4.6533 -2.0926 -3.8068 26 7 5.4336 -1.1231 -4.2352 27 14 3.4834 -2.9419 -4.9898 28 1 2.0868 -2.7666 -4.5163 29 1 3.6261 -2.3441 -6.3416 30 1 3.8070 -4.3899 -5.0518 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.7843 5.0262 -1.0283 35 1 0.0669 4.5128 0.5177 36 1 1.5143 5.5488 0.5087 37 1 3.6934 4.6435 -0.0113 38 1 5.1350 2.6240 -0.0112 39 1 6.6940 1.5777 1.1957 40 1 4.9842 1.8374 1.6278 41 1 6.4466 1.3597 3.6243 42 1 5.1383 0.1706 3.4149 43 1 8.0161 -0.1793 2.4575 44 1 7.3129 -0.9380 3.9058 45 1 5.6197 -2.0703 2.4748 46 1 7.2781 -2.5115 2.0002 47 1 5.9166 -4.3524 -0.6716 48 1 7.4140 -3.4161 -0.4487 49 1 6.4363 -3.8813 0.9640 50 1 6.1339 -1.1485 -1.9248 51 1 5.4014 -0.8499 -5.1654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731293398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:41 Heat of formation + Delta-G solvation = -0.274341 kcal Electronic energy + Delta-G solvation = -33338.193813 eV Core-core repulsion = 29239.335136 eV Total energy + Delta-G solvation = -4098.858676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.11985 -40.94772 -39.07613 -38.02595 -36.98138 -34.68600 -33.86037 -33.15557 -32.71959 -31.47131 -29.44390 -29.35801 -28.01229 -26.28494 -25.82469 -24.52592 -23.84598 -23.58142 -21.97538 -21.36663 -20.57602 -19.19274 -18.86726 -17.87938 -17.74622 -17.14923 -16.72435 -16.61685 -15.96629 -15.82624 -15.58164 -15.44574 -15.24758 -15.01235 -14.94534 -14.73831 -14.42222 -14.29358 -14.08737 -13.74820 -13.56829 -13.43152 -13.38912 -13.27530 -12.97781 -12.97530 -12.78892 -12.69968 -12.54012 -12.40614 -12.17043 -12.08318 -11.88751 -11.68886 -11.60914 -11.38451 -11.20320 -10.83287 -10.82562 -10.67590 -9.73475 -9.41918 -9.28263 -8.55862 -7.76960 -4.94000 -0.17771 0.24787 1.38710 1.43639 1.48149 2.04118 2.16963 2.21830 2.64806 2.77924 3.15912 3.56501 3.66296 3.74410 3.87891 3.94405 4.00956 4.05029 4.15094 4.26983 4.32047 4.33192 4.33620 4.38741 4.40024 4.46459 4.61540 4.63688 4.70878 4.75086 4.79333 4.81721 4.91323 4.95063 4.97552 5.05224 5.07819 5.10182 5.15162 5.16775 5.20639 5.28970 5.45676 5.49814 5.52278 5.59775 5.64641 5.98880 6.23951 6.45280 6.68028 6.82527 7.50591 7.69103 8.29376 8.52777 9.48294 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.005760 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.658852 B = 4859.556316 C = 7174.628393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.314 6.314 3 C 0.342 3.658 4 N -0.558 5.558 5 C 0.169 3.831 6 C -0.100 4.100 7 C -0.207 4.207 8 C -0.013 4.013 9 C -0.223 4.223 10 C 0.525 3.475 11 O -0.480 6.480 12 N -0.610 5.610 13 C 0.094 3.906 14 C -0.128 4.128 15 C -0.113 4.113 16 C -0.121 4.121 17 C 0.153 3.847 18 H 0.062 0.938 19 C 0.176 3.824 20 H 0.039 0.961 21 C -0.159 4.159 22 N -0.699 5.699 23 C -0.156 4.156 24 H 0.050 0.950 25 C -0.093 4.093 26 N -0.980 5.980 27 Si 0.951 3.049 28 H -0.297 1.297 29 H -0.297 1.297 30 H -0.280 1.280 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.027 0.973 48 H 0.046 0.954 49 H 0.074 0.926 50 H 0.363 0.637 51 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 13.766 19.910 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.163 3.837 4 N -0.284 5.284 5 C 0.031 3.969 6 C -0.157 4.157 7 C -0.227 4.227 8 C -0.038 4.038 9 C -0.229 4.229 10 C 0.311 3.689 11 O -0.352 6.352 12 N -0.346 5.346 13 C -0.028 4.028 14 C -0.166 4.166 15 C -0.150 4.150 16 C -0.160 4.160 17 C 0.050 3.950 18 H 0.080 0.920 19 C 0.068 3.932 20 H 0.057 0.943 21 C -0.219 4.219 22 N -0.337 5.337 23 C -0.290 4.290 24 H 0.068 0.932 25 C -0.282 4.282 26 N -0.635 5.635 27 Si 0.784 3.216 28 H -0.225 1.225 29 H -0.223 1.223 30 H -0.207 1.207 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.201 0.799 38 H 0.182 0.818 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.046 0.954 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.194 0.806 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.336 12.707 19.509 23.399 hybrid contribution -0.119 -0.484 -1.563 1.641 sum -2.454 12.223 17.945 21.851 Atomic orbital electron populations 1.23006 0.76213 1.04012 1.02296 1.86404 1.24119 1.24841 1.86579 1.19959 0.88625 0.85031 0.90075 1.67249 1.40614 0.98677 1.21845 1.21918 0.93579 0.92095 0.89268 1.20902 0.98861 0.91678 1.04294 1.22153 0.93286 1.00860 1.06366 1.22005 1.01930 0.89629 0.90273 1.20250 0.91645 0.96459 1.14579 1.18278 0.82252 0.87865 0.80534 1.91179 1.68752 1.35616 1.39628 1.47804 1.21301 1.19752 1.45758 1.22269 1.01363 0.88727 0.90401 1.21906 0.99454 0.99538 0.95698 1.21511 0.98354 0.94879 1.00275 1.21968 1.01587 0.99368 0.93053 1.21404 0.91941 0.85113 0.96592 0.92042 1.20589 0.96317 0.91982 0.84349 0.94297 1.22438 0.99954 0.98781 1.00689 1.42335 1.44719 1.42071 1.04552 1.19097 1.11031 1.09559 0.89277 0.93234 1.25136 1.03006 1.01357 0.98739 1.69773 1.44993 1.34281 1.14477 0.85481 0.79156 0.78232 0.78741 1.22537 1.22315 1.20684 0.87444 0.91062 0.92956 0.89261 0.90463 0.86965 0.79852 0.81817 0.90047 0.89092 0.87994 0.92972 0.90893 0.89849 0.92690 0.89393 0.95366 0.93517 0.90696 0.80578 0.95179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.21 10.38 113.37 1.18 2.39 16 2 O -0.31 -12.98 9.20 -71.27 -0.66 -13.63 16 3 C 0.34 13.07 7.48 85.13 0.64 13.71 16 4 N -0.56 -17.74 9.11 -296.06 -2.70 -20.44 16 5 C 0.17 4.01 6.78 42.58 0.29 4.30 16 6 C -0.10 -1.41 10.16 71.24 0.72 -0.68 16 7 C -0.21 -4.33 9.71 22.32 0.22 -4.11 16 8 C -0.01 -0.35 7.48 22.72 0.17 -0.18 16 9 C -0.22 -8.27 5.23 -19.91 -0.10 -8.37 16 10 C 0.52 22.37 6.92 86.69 0.60 22.97 16 11 O -0.48 -25.70 8.89 11.95 0.11 -25.59 16 12 N -0.61 -20.40 2.97 -798.77 -2.37 -22.77 16 13 C 0.09 2.09 4.86 86.36 0.42 2.51 16 14 C -0.13 -2.23 6.08 30.67 0.19 -2.04 16 15 C -0.11 -1.98 5.88 30.62 0.18 -1.80 16 16 C -0.12 -3.00 4.52 30.67 0.14 -2.86 16 17 C 0.15 5.20 2.60 44.97 0.12 5.31 16 18 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 19 C 0.18 7.74 1.80 44.99 0.08 7.82 16 20 H 0.04 1.98 6.24 -2.39 -0.01 1.97 16 21 C -0.16 -6.10 8.77 71.98 0.63 -5.47 16 22 N -0.70 -38.53 3.33 -322.94 -1.08 -39.60 16 23 C -0.16 -9.73 8.18 84.04 0.69 -9.04 16 24 H 0.05 3.15 7.83 -2.91 -0.02 3.12 16 25 C -0.09 -5.96 5.50 84.86 0.47 -5.50 16 26 N -0.98 -65.45 13.06 21.65 0.28 -65.17 16 27 Si 0.95 52.57 29.55 68.60 2.03 54.60 16 28 H -0.30 -16.51 7.11 99.48 0.71 -15.81 16 29 H -0.30 -16.26 7.11 99.48 0.71 -15.56 16 30 H -0.28 -14.75 7.11 99.48 0.71 -14.05 16 31 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.05 1.60 8.11 -2.38 -0.02 1.58 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.11 0.82 8.07 -2.39 -0.02 0.80 16 37 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.16 3.66 6.39 -2.91 -0.02 3.65 16 39 H 0.08 1.53 8.10 -2.38 -0.02 1.51 16 40 H 0.09 1.92 4.58 -2.39 -0.01 1.91 16 41 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.09 1.96 6.69 -2.39 -0.02 1.94 16 47 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.07 2.28 6.45 -2.39 -0.02 2.27 16 50 H 0.36 21.49 7.73 -92.71 -0.72 20.78 16 51 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -87.07 393.92 2.45 -84.62 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.22 Total: 29.04 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 6.62 Total: 18.95 kcal Atomic # 7 Polarization: -142.12 SS G_CDS: -5.87 Total: -147.98 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.55 Total: -39.22 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 2.03 Total: 54.60 kcal Total: -87.07 2.45 -84.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731293398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.346 kcal (2) G-P(sol) polarization free energy of solvation -87.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds