Wall clock time and date at job start Wed Apr 1 2020 04:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35429 * 116.99725 * 2 1 4 4 N 1.32237 * 119.80357 * 0.28400 * 3 2 1 5 5 C 1.31878 * 121.80079 * 180.33705 * 4 3 2 6 6 C 1.50698 * 119.40717 * 179.67847 * 5 4 3 7 7 C 1.38359 * 121.18695 * 359.66289 * 5 4 3 8 8 C 1.38341 * 119.45710 * 0.02562 * 7 5 4 9 9 C 1.39992 * 118.34991 * 0.02562 * 8 7 5 10 10 C 1.47516 * 120.60077 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00407 * 234.06020 * 10 9 8 12 12 N 1.34780 * 120.00027 * 54.05478 * 10 9 8 13 13 C 1.46930 * 120.62666 * 355.79373 * 12 10 9 14 14 C 1.53195 * 108.77579 * 126.11243 * 13 12 10 15 15 C 1.53042 * 109.31172 * 54.63284 * 14 13 12 16 16 C 1.53040 * 109.53858 * 298.63455 * 15 14 13 17 17 H 1.09003 * 109.50047 * 301.41532 * 16 15 14 18 18 C 1.52998 * 109.50054 * 181.35039 * 16 15 14 19 19 C 1.52997 * 109.47650 * 175.00150 * 18 16 15 20 20 N 1.46503 * 109.47377 * 180.02562 * 19 18 16 21 21 C 1.36940 * 119.99725 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99934 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99595 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00283 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99879 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47035 * 89.99691 * 25 23 21 27 27 H 1.48498 * 109.47036 * 209.99551 * 25 23 21 28 28 H 1.48502 * 109.47200 * 330.00242 * 25 23 21 29 29 C 1.46926 * 120.63160 * 175.50613 * 12 10 9 30 30 H 1.08995 * 109.46996 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47667 * 300.00597 * 1 2 3 32 32 H 1.08999 * 109.46824 * 60.00521 * 1 2 3 33 33 H 1.09004 * 109.46896 * 269.97537 * 6 5 4 34 34 H 1.08995 * 109.47247 * 29.98299 * 6 5 4 35 35 H 1.09003 * 109.46732 * 149.98123 * 6 5 4 36 36 H 1.07992 * 120.27574 * 180.02562 * 7 5 4 37 37 H 1.07994 * 120.82682 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.58222 * 245.89988 * 13 12 10 39 39 H 1.08996 * 109.59118 * 6.32383 * 13 12 10 40 40 H 1.08998 * 109.49699 * 174.57849 * 14 13 12 41 41 H 1.08996 * 109.49883 * 294.68482 * 14 13 12 42 42 H 1.08999 * 109.46019 * 58.65254 * 15 14 13 43 43 H 1.08995 * 109.45992 * 178.62762 * 15 14 13 44 44 H 1.09003 * 109.46938 * 294.99898 * 18 16 15 45 45 H 1.09005 * 109.47263 * 54.99663 * 18 16 15 46 46 H 1.09003 * 109.46745 * 299.99867 * 19 18 16 47 47 H 1.09005 * 109.47185 * 59.99465 * 19 18 16 48 48 H 0.96992 * 119.99627 * 359.97438 * 20 19 18 49 49 H 0.97002 * 120.00455 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.58955 * 353.67553 * 29 12 10 51 51 H 1.08998 * 109.58494 * 114.09961 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0057 5 6 1.8771 3.5084 -0.0007 6 6 0.9999 4.7339 -0.0010 7 6 3.2526 3.6576 -0.0067 8 6 4.0588 2.5334 -0.0066 9 6 3.4450 1.2752 -0.0009 10 6 4.2569 0.0436 0.0001 11 8 4.0728 -0.8067 -0.8493 12 7 5.2030 -0.1392 0.9425 13 6 5.5006 0.9174 1.9192 14 6 5.3879 0.3308 3.3299 15 6 6.2913 -0.8996 3.4401 16 6 5.8342 -1.9616 2.4374 17 1 4.7967 -2.2290 2.6382 18 6 6.7168 -3.2041 2.5716 19 6 6.1833 -4.3099 1.6587 20 7 7.0281 -5.4998 1.7877 21 6 6.7426 -6.6242 1.0601 22 1 5.8945 -6.6339 0.3915 23 6 7.5434 -7.7515 1.1819 24 7 8.5773 -7.7394 1.9964 25 14 7.1537 -9.2856 0.1900 26 1 7.8642 -9.2264 -1.1128 27 1 7.5974 -10.4870 0.9416 28 1 5.6899 -9.3629 -0.0477 29 6 5.9520 -1.4010 1.0166 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.7845 5.0261 -1.0288 34 1 0.0669 4.5130 0.5172 35 1 1.5143 5.5489 0.5082 36 1 3.6933 4.6435 -0.0115 37 1 5.1349 2.6241 -0.0116 38 1 6.5123 1.2896 1.7579 39 1 4.7865 1.7328 1.8044 40 1 5.6995 1.0775 4.0603 41 1 4.3547 0.0419 3.5223 42 1 7.3208 -0.6147 3.2233 43 1 6.2316 -1.3046 4.4502 44 1 7.7386 -2.9568 2.2836 45 1 6.7042 -3.5489 3.6056 46 1 5.1615 -4.5572 1.9467 47 1 6.1959 -3.9651 0.6247 48 1 7.7899 -5.4908 2.3879 49 1 9.1371 -8.5270 2.0812 50 1 5.5357 -2.1153 0.3063 51 1 7.0005 -1.2179 0.7818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732281487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:01 Heat of formation + Delta-G solvation = -30.872581 kcal Electronic energy + Delta-G solvation = -30872.236781 eV Core-core repulsion = 26772.051266 eV Total energy + Delta-G solvation = -4100.185516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39093 -39.89458 -38.37594 -37.68969 -35.34040 -33.94671 -32.98592 -32.17526 -32.13312 -30.59390 -28.93450 -27.71018 -27.11266 -25.50271 -24.21506 -23.36993 -23.12635 -22.47330 -20.94492 -20.40855 -19.52215 -18.46791 -17.54761 -17.23880 -16.91671 -16.51134 -16.04092 -15.42143 -15.09300 -14.75001 -14.70911 -14.54769 -14.47372 -14.37229 -13.95206 -13.65946 -13.47867 -13.37789 -13.07657 -13.01198 -12.92720 -12.83348 -12.63870 -12.57695 -12.13601 -12.02967 -11.47078 -11.33869 -11.10959 -11.07451 -10.99810 -10.79271 -10.56100 -10.41640 -10.39566 -10.23374 -10.14836 -9.87675 -9.71060 -9.57194 -8.82792 -8.78089 -8.64104 -6.83076 -5.68911 -2.96808 0.43002 0.84064 2.52470 2.75263 2.85777 3.31438 3.49841 3.54575 3.56805 3.69936 4.22368 4.26542 4.53757 4.58030 4.67857 4.73951 4.76923 4.79056 4.92757 4.99406 5.01102 5.05777 5.06240 5.09752 5.15185 5.26135 5.37314 5.43353 5.48178 5.49389 5.58512 5.61546 5.63907 5.66142 5.73590 5.82734 5.93231 5.96165 6.03486 6.08243 6.26177 6.31147 6.39140 6.49531 6.56315 6.88385 6.96230 6.99278 7.27549 7.42141 7.79157 8.10536 8.50633 9.61450 10.20323 10.55186 11.54229 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.002270 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.036854 B =12331.488104 C =13418.547629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.287 6.287 3 C 0.370 3.630 4 N -0.542 5.542 5 C 0.186 3.814 6 C -0.108 4.108 7 C -0.217 4.217 8 C -0.010 4.010 9 C -0.204 4.204 10 C 0.570 3.430 11 O -0.517 6.517 12 N -0.605 5.605 13 C 0.100 3.900 14 C -0.134 4.134 15 C -0.115 4.115 16 C -0.096 4.096 17 H 0.074 0.926 18 C -0.118 4.118 19 C 0.150 3.850 20 N -0.734 5.734 21 C -0.235 4.235 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.936 5.936 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.116 3.884 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.017 0.983 47 H 0.021 0.979 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.100 0.900 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 31.811 1.109 34.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.192 6.192 3 C 0.190 3.810 4 N -0.267 5.267 5 C 0.048 3.952 6 C -0.165 4.165 7 C -0.237 4.237 8 C -0.035 4.035 9 C -0.210 4.210 10 C 0.357 3.643 11 O -0.392 6.392 12 N -0.338 5.338 13 C -0.023 4.023 14 C -0.172 4.172 15 C -0.152 4.152 16 C -0.116 4.116 17 H 0.092 0.908 18 C -0.156 4.156 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.366 4.366 22 H 0.088 0.912 23 C -0.213 4.213 24 N -0.585 5.585 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.005 4.005 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.119 0.881 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.818 30.839 0.532 33.797 hybrid contribution 0.763 -0.714 -0.254 1.075 sum -13.055 30.125 0.279 32.833 Atomic orbital electron populations 1.22949 0.76801 1.03543 1.02332 1.86384 1.23128 1.23517 1.86159 1.19670 0.87815 0.84936 0.88541 1.67239 1.40246 0.98186 1.20999 1.21146 0.92164 0.91917 0.89981 1.20814 0.99387 0.92721 1.03582 1.21716 0.93820 0.99846 1.08367 1.21587 1.00813 0.90022 0.91090 1.19850 0.91699 0.95369 1.14044 1.17794 0.79302 0.85681 0.81543 1.90842 1.67448 1.44097 1.36799 1.48047 1.37811 1.17046 1.30942 1.21951 1.01409 0.90276 0.88649 1.21918 1.01054 0.98357 0.95915 1.21593 0.99162 0.94796 0.99690 1.21468 1.00899 0.95118 0.94095 0.90785 1.21724 0.98922 0.93933 1.01026 1.20719 0.93993 0.86938 0.96089 1.42373 1.33105 1.10058 1.52264 1.19270 1.09251 0.90569 1.17546 0.91185 1.24738 0.97990 0.98319 1.00230 1.69663 1.18683 1.29442 1.40713 0.86181 0.77631 0.82980 0.79401 1.21740 1.21827 1.20763 1.21849 0.95884 0.84575 0.98207 0.88173 0.92176 0.92102 0.89805 0.90190 0.90082 0.83852 0.83490 0.91017 0.89848 0.90798 0.91578 0.91607 0.91401 0.91759 0.91541 0.96509 0.96117 0.78380 0.93630 0.88129 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.29 -3.97 9.68 -21.04 -0.20 -4.17 16 3 C 0.37 4.71 7.50 -16.61 -0.12 4.58 16 4 N -0.54 -5.80 9.11 -9.21 -0.08 -5.88 16 5 C 0.19 1.46 6.78 -82.53 -0.56 0.90 16 6 C -0.11 -0.47 10.16 36.00 0.37 -0.11 16 7 C -0.22 -1.43 9.71 -39.50 -0.38 -1.82 16 8 C -0.01 -0.08 7.55 -38.89 -0.29 -0.37 16 9 C -0.20 -2.46 4.91 -104.69 -0.51 -2.97 16 10 C 0.57 8.43 6.88 -12.48 -0.09 8.35 16 11 O -0.52 -9.91 16.19 2.23 0.04 -9.87 16 12 N -0.61 -7.58 2.97 -174.00 -0.52 -8.10 16 13 C 0.10 0.87 5.58 -3.71 -0.02 0.85 16 14 C -0.13 -1.16 6.08 -26.61 -0.16 -1.32 16 15 C -0.11 -1.19 5.17 -26.69 -0.14 -1.33 16 16 C -0.10 -1.29 2.34 -90.50 -0.21 -1.50 16 17 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 18 C -0.12 -1.93 4.80 -26.73 -0.13 -2.06 16 19 C 0.15 3.21 6.02 -4.04 -0.02 3.19 16 20 N -0.73 -19.62 5.60 -59.91 -0.34 -19.95 16 21 C -0.23 -6.94 9.99 -15.06 -0.15 -7.09 16 22 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 23 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 24 N -0.94 -29.21 13.06 55.49 0.72 -28.48 16 25 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.12 1.64 5.32 -3.71 -0.02 1.62 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.18 8.07 -51.93 -0.42 -0.23 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.15 0.87 7.42 -52.49 -0.39 0.48 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.63 4.71 -51.93 -0.24 0.38 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.46 6.70 -51.93 -0.35 0.11 16 48 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 49 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.10 1.73 5.75 -51.93 -0.30 1.43 16 51 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -36.89 408.72 -9.06 -45.95 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.32 Total: 4.31 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.50 Total: 1.72 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.21 Total: -62.42 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.17 Total: -14.04 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.89 -9.06 -45.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732281487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.077 kcal (2) G-P(sol) polarization free energy of solvation -36.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds