Wall clock time and date at job start Wed Apr 1 2020 04:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00044 * 2 1 4 4 C 1.52994 * 109.47295 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47278 * 64.99914 * 4 3 2 6 6 C 1.36943 * 119.99838 * 270.00157 * 5 4 3 7 7 H 1.08007 * 119.99788 * 133.85501 * 6 5 4 8 8 C 1.38804 * 119.99967 * 313.85440 * 6 5 4 9 9 N 1.31622 * 120.00203 * 359.37102 * 8 6 5 10 10 Si 1.86803 * 119.99626 * 179.37170 * 8 6 5 11 11 H 1.48498 * 109.47278 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46894 * 120.00213 * 10 8 6 13 13 H 1.48502 * 109.47001 * 239.99353 * 10 8 6 14 14 C 1.46503 * 120.00039 * 89.99688 * 5 4 3 15 15 C 1.53043 * 109.45584 * 124.35529 * 14 5 4 16 16 C 1.53192 * 109.30909 * 181.38429 * 15 14 5 17 17 N 1.46923 * 108.78075 * 305.36981 * 16 15 14 18 18 C 1.34782 * 120.62901 * 233.58821 * 17 16 15 19 19 O 1.21517 * 119.99436 * 179.58516 * 18 17 16 20 20 C 1.48169 * 120.00030 * 359.58644 * 18 17 16 21 21 C 1.39309 * 119.72208 * 156.30979 * 20 18 17 22 22 C 1.38586 * 119.05904 * 180.25107 * 21 20 18 23 23 C 1.38629 * 118.48546 * 359.50678 * 22 21 20 24 24 C 1.38561 * 119.35164 * 0.51559 * 23 22 21 25 25 C 1.50704 * 119.54312 * 179.75114 * 24 23 22 26 26 N 1.31515 * 120.90513 * 359.72135 * 24 23 22 27 27 C 1.46928 * 118.73955 * 53.85684 * 17 16 15 28 28 C 1.53042 * 109.46009 * 244.42503 * 14 5 4 29 29 H 1.08992 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47006 * 300.00570 * 1 2 3 31 31 H 1.09006 * 109.46576 * 60.00056 * 1 2 3 32 32 H 1.09005 * 109.46807 * 59.99765 * 3 2 1 33 33 H 1.08996 * 109.46883 * 300.00163 * 3 2 1 34 34 H 1.09000 * 109.47260 * 304.99887 * 4 3 2 35 35 H 1.09005 * 109.47378 * 185.00135 * 4 3 2 36 36 H 0.96997 * 119.99754 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.46001 * 4.38643 * 14 5 4 38 38 H 1.09005 * 109.49538 * 61.44196 * 15 14 5 39 39 H 1.08989 * 109.52677 * 301.35779 * 15 14 5 40 40 H 1.09008 * 109.58626 * 185.57894 * 16 15 14 41 41 H 1.09006 * 109.70275 * 65.22618 * 16 15 14 42 42 H 1.08002 * 120.46806 * 359.97438 * 21 20 18 43 43 H 1.07997 * 120.75846 * 179.72527 * 22 21 20 44 44 H 1.07996 * 120.32186 * 180.23743 * 23 22 21 45 45 H 1.09001 * 109.46912 * 269.96984 * 25 24 23 46 46 H 1.08994 * 109.47498 * 29.97654 * 25 24 23 47 47 H 1.09003 * 109.46653 * 149.97865 * 25 24 23 48 48 H 1.08998 * 109.58393 * 65.92740 * 27 17 16 49 49 H 1.09001 * 109.58688 * 186.35748 * 27 17 16 50 50 H 1.09003 * 109.49705 * 298.56370 * 28 14 5 51 51 H 1.08995 * 109.49601 * 58.66598 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0979 -0.7975 -1.3344 7 1 3.6966 -1.3240 -2.1878 8 6 4.7364 -1.5008 -0.3223 9 7 5.2363 -0.8579 0.7117 10 14 4.8861 -3.3598 -0.4278 11 1 4.2475 -3.8376 -1.6804 12 1 6.3213 -3.7416 -0.4275 13 1 4.2094 -3.9780 0.7406 14 6 4.2883 1.3998 -2.4130 15 6 5.7127 1.1028 -2.8874 16 6 6.0473 2.0030 -4.0809 17 7 5.0174 1.8221 -5.1131 18 6 5.3605 1.5041 -6.3771 19 8 4.4988 1.3498 -7.2199 20 6 6.7882 1.3426 -6.7389 21 6 7.1380 0.5628 -7.8391 22 6 8.4778 0.4169 -8.1620 23 6 9.4210 1.0646 -7.3792 24 6 9.0011 1.8241 -6.2990 25 6 10.0231 2.5254 -5.4418 26 7 7.7231 1.9418 -6.0120 27 6 3.6068 2.0004 -4.7425 28 6 3.2993 1.0947 -3.5403 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9785 2.1766 0.0902 36 1 5.6828 -1.3494 1.4188 37 1 4.2097 2.4511 -2.1358 38 1 5.7854 0.0577 -3.1884 39 1 6.4147 1.2976 -2.0767 40 1 7.0216 1.7275 -4.4846 41 1 6.0654 3.0451 -3.7615 42 1 6.3761 0.0754 -8.4292 43 1 8.7800 -0.1848 -9.0063 44 1 10.4729 0.9743 -7.6064 45 1 10.3293 1.8667 -4.6291 46 1 10.8915 2.7822 -6.0483 47 1 9.5874 3.4348 -5.0277 48 1 3.4284 3.0417 -4.4742 49 1 2.9704 1.7231 -5.5829 50 1 3.3948 0.0497 -3.8352 51 1 2.2833 1.2842 -3.1941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733279280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:20 Heat of formation + Delta-G solvation = -5.483922 kcal Electronic energy + Delta-G solvation = -31958.509304 eV Core-core repulsion = 27859.424723 eV Total energy + Delta-G solvation = -4099.084581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.90448 -39.20646 -37.54252 -36.75120 -34.88913 -33.18413 -32.96529 -31.74675 -30.48504 -30.37087 -28.12549 -27.84708 -25.61163 -25.43835 -24.15779 -22.95404 -22.84851 -22.06347 -20.76859 -19.99751 -19.05019 -17.47515 -16.68923 -16.30094 -16.05547 -15.74647 -15.53631 -15.20812 -14.98403 -14.77655 -14.40215 -14.27379 -13.97154 -13.81284 -13.57168 -13.45741 -13.38715 -13.00001 -12.92594 -12.50575 -12.45231 -12.24720 -12.07573 -11.73901 -11.65286 -11.45832 -11.26734 -10.80743 -10.76360 -10.67455 -10.64210 -10.40232 -10.16470 -10.05000 -9.91228 -9.88683 -9.68533 -9.52690 -9.13642 -8.91109 -8.72764 -8.34349 -8.26547 -6.32225 -5.59602 -3.34181 0.58726 1.02075 2.77834 3.15391 3.42879 3.50640 3.53453 3.67106 3.99942 4.47005 4.57085 4.58770 4.75764 4.79464 4.89869 5.12280 5.32282 5.34736 5.39849 5.43683 5.47936 5.53861 5.67916 5.71159 5.79906 5.81638 5.84340 5.87683 5.91357 5.92890 5.98148 6.11220 6.14261 6.19320 6.23537 6.31318 6.38897 6.48794 6.58226 6.63697 6.74911 6.80198 6.84050 6.97528 7.21546 7.30575 7.56715 7.71584 7.81262 8.02409 8.16531 8.31098 8.77264 9.36553 9.93134 10.53410 11.36950 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003348 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.237601 B = 8361.465806 C = 9264.772528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.047 3.953 4 C 0.138 3.862 5 N -0.574 5.574 6 C -0.227 4.227 7 H 0.052 0.948 8 C 0.022 3.978 9 N -0.898 5.898 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.290 1.290 14 C 0.177 3.823 15 C -0.132 4.132 16 C 0.082 3.918 17 N -0.579 5.579 18 C 0.567 3.433 19 O -0.547 6.547 20 C 0.095 3.905 21 C -0.122 4.122 22 C -0.078 4.078 23 C -0.155 4.155 24 C 0.120 3.880 25 C -0.106 4.106 26 N -0.446 5.446 27 C 0.111 3.889 28 C -0.139 4.139 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.021 0.979 33 H 0.024 0.976 34 H 0.116 0.884 35 H 0.035 0.965 36 H 0.251 0.749 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.060 0.940 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.067 0.933 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 7.650 -11.769 15.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C -0.033 4.033 4 C 0.011 3.989 5 N -0.293 5.293 6 C -0.357 4.357 7 H 0.070 0.930 8 C -0.177 4.177 9 N -0.542 5.542 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.217 1.217 14 C 0.070 3.930 15 C -0.171 4.171 16 C -0.041 4.041 17 N -0.309 5.309 18 C 0.353 3.647 19 O -0.426 6.426 20 C -0.043 4.043 21 C -0.143 4.143 22 C -0.103 4.103 23 C -0.174 4.174 24 C -0.019 4.019 25 C -0.163 4.163 26 N -0.160 5.160 27 C -0.011 4.011 28 C -0.179 4.179 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.133 0.867 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.086 0.914 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.743 7.838 -11.313 14.913 hybrid contribution -0.068 -1.330 -0.581 1.453 sum 5.676 6.508 -11.894 14.698 Atomic orbital electron populations 1.22619 0.84495 1.01353 0.98273 1.88227 1.16292 1.27772 1.94776 1.23478 0.99388 0.83935 0.96455 1.21259 0.86927 0.96610 0.94071 1.43662 1.75762 1.02576 1.07299 1.18757 1.28882 0.82057 1.06009 0.93022 1.25352 0.96888 0.97536 0.97930 1.69676 1.40398 1.34009 1.10115 0.86362 0.77047 0.86616 0.77607 1.20327 1.21876 1.21674 1.20365 0.91353 0.93344 0.87960 1.22262 0.99139 0.99914 0.95823 1.22844 0.93058 0.99804 0.88390 1.48024 1.08475 1.65859 1.08515 1.17893 0.86595 0.77455 0.82745 1.90748 1.49882 1.52654 1.49286 1.21196 0.93554 0.96318 0.93233 1.22060 0.97352 0.98098 0.96758 1.21594 0.92403 0.97360 0.98985 1.22142 1.01039 0.98081 0.96188 1.21483 0.91511 0.94853 0.94007 1.20759 0.95685 1.00907 0.98930 1.67581 1.01189 1.20658 1.26542 1.21850 0.80971 0.99566 0.98759 1.22478 1.00456 0.99898 0.95061 0.90829 0.95654 0.95448 0.96082 0.95821 0.86654 0.94702 0.93825 0.93665 0.91436 0.91065 0.85699 0.92191 0.83682 0.84139 0.84417 0.89878 0.90624 0.90108 0.91865 0.89786 0.91430 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.87 10.18 -35.23 -0.36 -8.23 16 3 C 0.05 0.95 6.28 37.15 0.23 1.19 16 4 C 0.14 3.16 5.69 -4.04 -0.02 3.14 16 5 N -0.57 -13.61 2.33 -165.61 -0.39 -13.99 16 6 C -0.23 -6.03 7.57 -15.06 -0.11 -6.14 16 7 H 0.05 1.45 7.10 -52.48 -0.37 1.07 16 8 C 0.02 0.59 5.33 -17.43 -0.09 0.50 16 9 N -0.90 -25.29 10.95 55.49 0.61 -24.69 16 10 Si 0.89 22.11 29.55 -169.99 -5.02 17.08 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.18 3.56 2.59 -67.88 -0.18 3.38 16 15 C -0.13 -2.55 5.23 -26.61 -0.14 -2.69 16 16 C 0.08 1.32 5.96 -3.71 -0.02 1.30 16 17 N -0.58 -9.75 2.97 -173.48 -0.51 -10.27 16 18 C 0.57 9.79 7.60 -12.18 -0.09 9.70 16 19 O -0.55 -10.56 15.98 5.35 0.09 -10.47 16 20 C 0.09 1.40 6.40 -83.01 -0.53 0.87 16 21 C -0.12 -1.51 9.63 -39.05 -0.38 -1.88 16 22 C -0.08 -0.73 10.17 -39.31 -0.40 -1.13 16 23 C -0.15 -1.38 9.75 -39.32 -0.38 -1.76 16 24 C 0.12 1.30 6.78 -82.61 -0.56 0.74 16 25 C -0.11 -0.83 10.17 36.01 0.37 -0.46 16 26 N -0.45 -6.08 6.38 -6.06 -0.04 -6.12 16 27 C 0.11 1.83 6.46 -3.48 -0.02 1.80 16 28 C -0.14 -2.59 5.39 -26.38 -0.14 -2.74 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.12 3.08 5.37 -51.93 -0.28 2.80 16 35 H 0.03 0.74 7.89 -51.93 -0.41 0.33 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.05 0.86 7.77 -51.93 -0.40 0.46 16 38 H 0.07 1.49 7.62 -51.93 -0.40 1.09 16 39 H 0.07 1.46 8.14 -51.94 -0.42 1.04 16 40 H 0.13 1.97 4.10 -71.84 -0.29 1.68 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.15 1.71 7.82 -52.49 -0.41 1.30 16 43 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 50 H 0.07 1.43 7.30 -51.93 -0.38 1.05 16 51 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 405.69 15.07 6.11 6.11 Total: -1.00 -31.87 405.69 -9.24 -41.10 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.36 Total: 2.02 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.36 Total: 7.45 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.33 Total: -55.06 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.27 Total: -18.70 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.87 -9.24 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733279280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.618 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds