Wall clock time and date at job start Wed Apr 1 2020 04:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00044 * 2 1 4 4 C 1.52994 * 109.47295 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47278 * 64.99914 * 4 3 2 6 6 C 1.36943 * 119.99838 * 270.00157 * 5 4 3 7 7 H 1.08007 * 119.99788 * 133.85501 * 6 5 4 8 8 C 1.38804 * 119.99967 * 313.85440 * 6 5 4 9 9 N 1.31622 * 120.00203 * 359.37102 * 8 6 5 10 10 Si 1.86803 * 119.99626 * 179.37170 * 8 6 5 11 11 H 1.48498 * 109.47278 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46894 * 120.00213 * 10 8 6 13 13 H 1.48502 * 109.47001 * 239.99353 * 10 8 6 14 14 C 1.46503 * 120.00039 * 89.99688 * 5 4 3 15 15 C 1.53043 * 109.45584 * 124.35529 * 14 5 4 16 16 C 1.53192 * 109.30909 * 181.38429 * 15 14 5 17 17 N 1.46923 * 108.78075 * 305.36981 * 16 15 14 18 18 C 1.34782 * 120.62901 * 233.58821 * 17 16 15 19 19 O 1.21517 * 119.99436 * 179.58516 * 18 17 16 20 20 C 1.48169 * 120.00030 * 359.58644 * 18 17 16 21 21 C 1.39309 * 119.72208 * 156.30979 * 20 18 17 22 22 C 1.38586 * 119.05904 * 180.25107 * 21 20 18 23 23 C 1.38629 * 118.48546 * 359.50678 * 22 21 20 24 24 C 1.38561 * 119.35164 * 0.51559 * 23 22 21 25 25 C 1.50704 * 119.54312 * 179.75114 * 24 23 22 26 26 N 1.31515 * 120.90513 * 359.72135 * 24 23 22 27 27 C 1.46928 * 118.73955 * 53.85684 * 17 16 15 28 28 C 1.53042 * 109.46009 * 244.42503 * 14 5 4 29 29 H 1.08992 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47006 * 300.00570 * 1 2 3 31 31 H 1.09006 * 109.46576 * 60.00056 * 1 2 3 32 32 H 1.09005 * 109.46807 * 59.99765 * 3 2 1 33 33 H 1.08996 * 109.46883 * 300.00163 * 3 2 1 34 34 H 1.09000 * 109.47260 * 304.99887 * 4 3 2 35 35 H 1.09005 * 109.47378 * 185.00135 * 4 3 2 36 36 H 0.96997 * 119.99754 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.46001 * 4.38643 * 14 5 4 38 38 H 1.09005 * 109.49538 * 61.44196 * 15 14 5 39 39 H 1.08989 * 109.52677 * 301.35779 * 15 14 5 40 40 H 1.09008 * 109.58626 * 185.57894 * 16 15 14 41 41 H 1.09006 * 109.70275 * 65.22618 * 16 15 14 42 42 H 1.08002 * 120.46806 * 359.97438 * 21 20 18 43 43 H 1.07997 * 120.75846 * 179.72527 * 22 21 20 44 44 H 1.07996 * 120.32186 * 180.23743 * 23 22 21 45 45 H 1.09001 * 109.46912 * 269.96984 * 25 24 23 46 46 H 1.08994 * 109.47498 * 29.97654 * 25 24 23 47 47 H 1.09003 * 109.46653 * 149.97865 * 25 24 23 48 48 H 1.08998 * 109.58393 * 65.92740 * 27 17 16 49 49 H 1.09001 * 109.58688 * 186.35748 * 27 17 16 50 50 H 1.09003 * 109.49705 * 298.56370 * 28 14 5 51 51 H 1.08995 * 109.49601 * 58.66598 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.0979 -0.7975 -1.3344 7 1 3.6966 -1.3240 -2.1878 8 6 4.7364 -1.5008 -0.3223 9 7 5.2363 -0.8579 0.7117 10 14 4.8861 -3.3598 -0.4278 11 1 4.2475 -3.8376 -1.6804 12 1 6.3213 -3.7416 -0.4275 13 1 4.2094 -3.9780 0.7406 14 6 4.2883 1.3998 -2.4130 15 6 5.7127 1.1028 -2.8874 16 6 6.0473 2.0030 -4.0809 17 7 5.0174 1.8221 -5.1131 18 6 5.3605 1.5041 -6.3771 19 8 4.4988 1.3498 -7.2199 20 6 6.7882 1.3426 -6.7389 21 6 7.1380 0.5628 -7.8391 22 6 8.4778 0.4169 -8.1620 23 6 9.4210 1.0646 -7.3792 24 6 9.0011 1.8241 -6.2990 25 6 10.0231 2.5254 -5.4418 26 7 7.7231 1.9418 -6.0120 27 6 3.6068 2.0004 -4.7425 28 6 3.2993 1.0947 -3.5403 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9785 2.1766 0.0902 36 1 5.6828 -1.3494 1.4188 37 1 4.2097 2.4511 -2.1358 38 1 5.7854 0.0577 -3.1884 39 1 6.4147 1.2976 -2.0767 40 1 7.0216 1.7275 -4.4846 41 1 6.0654 3.0451 -3.7615 42 1 6.3761 0.0754 -8.4292 43 1 8.7800 -0.1848 -9.0063 44 1 10.4729 0.9743 -7.6064 45 1 10.3293 1.8667 -4.6291 46 1 10.8915 2.7822 -6.0483 47 1 9.5874 3.4348 -5.0277 48 1 3.4284 3.0417 -4.4742 49 1 2.9704 1.7231 -5.5829 50 1 3.3948 0.0497 -3.8352 51 1 2.2833 1.2842 -3.1941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733279280.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:19 Heat of formation + Delta-G solvation = -24.234565 kcal Electronic energy + Delta-G solvation = -31959.322393 eV Core-core repulsion = 27859.424723 eV Total energy + Delta-G solvation = -4099.897670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94854 -40.40124 -39.12829 -38.28787 -36.55389 -34.14051 -33.98304 -33.36885 -32.17924 -31.77724 -29.76486 -28.67902 -27.16094 -26.79635 -25.67224 -24.36075 -24.15491 -23.06786 -22.30673 -21.62681 -20.45586 -18.78949 -18.02580 -17.65522 -17.33075 -16.98858 -16.83947 -16.70897 -16.51405 -16.38122 -15.69037 -15.50361 -15.38567 -15.25594 -15.15981 -14.75094 -14.59641 -14.36574 -14.14182 -13.69858 -13.38123 -13.35532 -13.16175 -13.13764 -13.06815 -12.91472 -12.78849 -12.69537 -12.57264 -12.34724 -12.20701 -12.06466 -11.79714 -11.51802 -11.49729 -11.39799 -11.19767 -10.87534 -10.42234 -10.31306 -10.02967 -10.01684 -9.62141 -8.29492 -7.63177 -5.42164 -0.33416 0.21590 1.41663 1.45169 1.52809 1.61742 1.92729 2.54681 2.73697 2.99586 3.24422 3.43550 3.56614 3.64502 3.85310 4.01355 4.03304 4.09142 4.21471 4.23849 4.37212 4.43243 4.44251 4.46291 4.55475 4.60375 4.64553 4.68566 4.74139 4.79592 4.81258 4.83636 4.86860 4.92922 4.96322 5.03495 5.08749 5.12862 5.13996 5.18276 5.23118 5.26386 5.45503 5.61393 5.64370 5.75345 5.77987 6.01713 6.32614 6.57909 6.70960 6.76027 7.03846 7.35860 7.98894 8.52079 9.26708 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003348 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.237601 B = 8361.465806 C = 9264.772528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.055 3.945 4 C 0.135 3.865 5 N -0.586 5.586 6 C -0.217 4.217 7 H 0.031 0.969 8 C -0.022 4.022 9 N -0.918 5.918 10 Si 0.939 3.061 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.293 1.293 14 C 0.174 3.826 15 C -0.118 4.118 16 C 0.095 3.905 17 N -0.584 5.584 18 C 0.561 3.439 19 O -0.578 6.578 20 C 0.061 3.939 21 C -0.133 4.133 22 C -0.071 4.071 23 C -0.139 4.139 24 C 0.107 3.893 25 C -0.104 4.104 26 N -0.468 5.468 27 C 0.117 3.883 28 C -0.123 4.123 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.247 0.753 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.141 0.859 43 H 0.178 0.822 44 H 0.180 0.820 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.033 0.967 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 8.776 -13.102 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.024 4.024 4 C 0.009 3.991 5 N -0.305 5.305 6 C -0.348 4.348 7 H 0.049 0.951 8 C -0.218 4.218 9 N -0.563 5.563 10 Si 0.769 3.231 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.220 1.220 14 C 0.068 3.932 15 C -0.158 4.158 16 C -0.028 4.028 17 N -0.314 5.314 18 C 0.349 3.651 19 O -0.458 6.458 20 C -0.076 4.076 21 C -0.154 4.154 22 C -0.096 4.096 23 C -0.158 4.158 24 C -0.032 4.032 25 C -0.161 4.161 26 N -0.182 5.182 27 C -0.005 4.005 28 C -0.163 4.163 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.152 0.848 41 H 0.096 0.904 42 H 0.159 0.841 43 H 0.195 0.805 44 H 0.197 0.803 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.107 0.893 49 H 0.097 0.903 50 H 0.052 0.948 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.204 8.977 -12.652 17.104 hybrid contribution -0.490 -1.665 -0.221 1.750 sum 6.714 7.312 -12.873 16.256 Atomic orbital electron populations 1.22795 0.81845 1.02467 0.99879 1.88148 1.19344 1.28923 1.95142 1.23291 0.97363 0.83751 0.97997 1.21161 0.89089 0.96380 0.92489 1.43805 1.76246 1.02007 1.08479 1.18638 1.27661 0.83637 1.04857 0.95107 1.25810 0.97604 1.00261 0.98157 1.69821 1.41456 1.34613 1.10453 0.85648 0.76835 0.83544 0.77077 1.20509 1.21640 1.21987 1.20522 0.91899 0.93688 0.87113 1.22077 0.98497 0.98554 0.96691 1.22776 0.93370 0.99807 0.86800 1.48109 1.08569 1.65947 1.08763 1.18389 0.87879 0.76458 0.82368 1.90707 1.51180 1.53943 1.49994 1.20921 0.92426 0.99002 0.95202 1.22198 0.99073 0.97990 0.96152 1.22030 0.90882 0.96986 0.99743 1.22631 1.03009 0.95759 0.94441 1.22096 0.90878 0.95193 0.95081 1.20856 0.95801 1.00300 0.99103 1.67374 1.02356 1.21310 1.27143 1.21789 0.81101 1.00281 0.97359 1.22261 1.00175 0.98379 0.95535 0.90115 0.93558 0.94143 0.93840 0.94649 0.90199 0.93226 0.94336 0.91739 0.94923 0.92480 0.84849 0.90373 0.84108 0.80478 0.80298 0.89630 0.87567 0.90765 0.89253 0.90256 0.94836 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.57 10.18 -148.98 -1.52 -19.08 16 3 C 0.05 2.18 6.28 71.98 0.45 2.63 16 4 C 0.13 6.22 5.69 86.38 0.49 6.71 16 5 N -0.59 -28.25 2.33 -677.87 -1.58 -29.83 16 6 C -0.22 -11.89 7.57 84.03 0.64 -11.25 16 7 H 0.03 1.82 7.10 -2.91 -0.02 1.80 16 8 C -0.02 -1.24 5.33 84.86 0.45 -0.79 16 9 N -0.92 -53.06 10.95 21.65 0.24 -52.83 16 10 Si 0.94 46.61 29.55 68.60 2.03 48.63 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 14 C 0.17 7.03 2.59 45.02 0.12 7.15 16 15 C -0.12 -4.68 5.23 30.67 0.16 -4.52 16 16 C 0.09 3.04 5.96 86.36 0.51 3.56 16 17 N -0.58 -19.82 2.97 -821.07 -2.44 -22.26 16 18 C 0.56 19.78 7.60 86.88 0.66 20.44 16 19 O -0.58 -22.95 15.98 -3.77 -0.06 -23.01 16 20 C 0.06 1.79 6.40 41.91 0.27 2.06 16 21 C -0.13 -3.19 9.63 22.61 0.22 -2.97 16 22 C -0.07 -1.11 10.17 22.45 0.23 -0.89 16 23 C -0.14 -1.94 9.75 22.44 0.22 -1.72 16 24 C 0.11 2.05 6.78 42.68 0.29 2.34 16 25 C -0.10 -1.33 10.17 71.24 0.72 -0.60 16 26 N -0.47 -12.33 6.38 -173.08 -1.10 -13.43 16 27 C 0.12 3.83 6.46 86.51 0.56 4.38 16 28 C -0.12 -4.68 5.39 30.82 0.17 -4.51 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 4.36 5.37 -2.39 -0.01 4.35 16 35 H 0.05 2.08 7.89 -2.38 -0.02 2.06 16 36 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.06 2.37 7.77 -2.39 -0.02 2.35 16 38 H 0.03 1.49 7.62 -2.38 -0.02 1.47 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.13 4.20 4.10 -41.71 -0.17 4.03 16 41 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.14 3.36 7.82 -2.91 -0.02 3.34 16 43 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.11 0.70 8.08 -2.39 -0.02 0.68 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 50 H 0.03 1.48 7.30 -2.39 -0.02 1.46 16 51 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -72.73 405.69 3.73 -69.00 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.75 Total: 18.68 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 7.40 Total: 24.13 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.88 Total: -118.35 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.58 Total: -42.09 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -72.73 3.73 -69.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733279280.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.763 kcal (2) G-P(sol) polarization free energy of solvation -72.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds