Wall clock time and date at job start Wed Apr 1 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38218 * 120.41998 * 2 1 4 4 N 1.31856 * 120.76562 * 179.97438 * 3 2 1 5 5 C 1.31890 * 121.72285 * 359.70820 * 4 3 2 6 6 C 1.38180 * 120.76425 * 0.58094 * 5 4 3 7 7 C 1.50704 * 120.41960 * 179.70592 * 6 5 4 8 8 C 1.53004 * 109.46825 * 269.72680 * 7 6 5 9 9 C 1.50704 * 109.46825 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99922 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99803 * 180.02562 * 9 8 7 12 12 C 1.47150 * 120.98437 * 359.97260 * 11 9 8 13 13 C 1.53296 * 108.38528 * 129.48936 * 12 11 9 14 14 O 1.42964 * 109.22135 * 52.30224 * 13 12 11 15 15 C 1.42960 * 114.16740 * 297.41748 * 14 13 12 16 16 H 1.09002 * 109.51546 * 302.65996 * 15 14 13 17 17 C 1.53000 * 109.55157 * 182.52892 * 15 14 13 18 18 H 1.09008 * 109.46824 * 185.12602 * 17 15 14 19 19 C 1.52999 * 109.47380 * 305.13058 * 17 15 14 20 20 N 1.46499 * 109.46935 * 65.13322 * 17 15 14 21 21 C 1.36947 * 119.99936 * 154.99942 * 20 17 15 22 22 H 1.07991 * 119.99978 * 359.97438 * 21 20 17 23 23 C 1.38810 * 119.99654 * 179.97438 * 21 20 17 24 24 N 1.31616 * 120.00483 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47091 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47064 * 119.99755 * 25 23 21 28 28 H 1.48498 * 109.47161 * 239.99783 * 25 23 21 29 29 C 1.47152 * 120.98150 * 180.02562 * 11 9 8 30 30 C 1.38628 * 120.41805 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46919 * 270.02126 * 1 2 3 32 32 H 1.08998 * 109.47393 * 30.01950 * 1 2 3 33 33 H 1.09004 * 109.47765 * 150.02036 * 1 2 3 34 34 H 1.08003 * 119.62044 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.61749 * 180.30953 * 5 4 3 36 36 H 1.08995 * 109.47358 * 149.72220 * 7 6 5 37 37 H 1.09002 * 109.47039 * 29.72083 * 7 6 5 38 38 H 1.09001 * 109.47165 * 59.99858 * 8 7 6 39 39 H 1.09002 * 109.46824 * 299.99534 * 8 7 6 40 40 H 1.08996 * 109.68517 * 249.21362 * 12 11 9 41 41 H 1.08998 * 109.68081 * 9.73435 * 12 11 9 42 42 H 1.08997 * 109.51548 * 172.22770 * 13 12 11 43 43 H 1.09000 * 109.51318 * 292.32957 * 13 12 11 44 44 H 1.08996 * 109.47058 * 299.99569 * 19 17 15 45 45 H 1.08997 * 109.47139 * 60.00294 * 19 17 15 46 46 H 1.08998 * 109.46871 * 180.02562 * 19 17 15 47 47 H 0.96996 * 120.00378 * 334.99523 * 20 17 15 48 48 H 0.97001 * 120.00290 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.68438 * 110.78717 * 29 11 9 50 50 H 1.09001 * 109.71355 * 350.24576 * 29 11 9 51 51 H 1.07999 * 120.79106 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5253 1.1999 0.0005 5 6 4.2256 0.0822 0.0067 6 6 3.5947 -1.1472 0.0010 7 6 4.4026 -2.4194 0.0015 8 6 4.6765 -2.8501 -1.4409 9 6 5.4849 -4.1220 -1.4404 10 8 5.8103 -4.6332 -0.3898 11 7 5.8471 -4.6906 -2.6073 12 6 5.4646 -4.0885 -3.8943 13 6 6.7206 -3.9707 -4.7653 14 8 7.3711 -5.2422 -4.8276 15 6 7.8353 -5.7247 -3.5645 16 1 8.5167 -4.9965 -3.1246 17 6 8.5659 -7.0545 -3.7614 18 1 8.8394 -7.4661 -2.7898 19 6 7.6484 -8.0372 -4.4917 20 7 9.7764 -6.8335 -4.5564 21 6 10.8337 -7.6972 -4.4484 22 1 10.7752 -8.5409 -3.7769 23 6 11.9804 -7.4881 -5.2021 24 7 12.0515 -6.4601 -6.0208 25 14 13.4229 -8.6658 -5.0542 26 1 13.0939 -9.7307 -4.0728 27 1 13.6982 -9.2799 -6.3780 28 1 14.6234 -7.9228 -4.5939 29 6 6.6359 -5.9326 -2.6320 30 6 2.2088 -1.1955 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3635 -0.8902 -0.5135 34 1 1.6674 2.1276 0.0004 35 1 5.3046 0.1284 0.0120 36 1 3.8459 -3.2031 0.5153 37 1 5.3485 -2.2489 0.5156 38 1 5.2332 -2.0663 -1.9546 39 1 3.7306 -3.0205 -1.9550 40 1 4.7306 -4.7220 -4.3923 41 1 5.0406 -3.0988 -3.7250 42 1 6.4386 -3.6563 -5.7702 43 1 7.3976 -3.2355 -4.3304 44 1 6.7478 -8.2017 -3.9001 45 1 7.3750 -7.6257 -5.4632 46 1 8.1688 -8.9847 -4.6315 47 1 9.8291 -6.0755 -5.1593 48 1 12.8527 -6.3141 -6.5478 49 1 6.0197 -6.7516 -3.0031 50 1 6.9881 -6.1646 -1.6269 51 1 1.6887 -2.1419 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734182198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:13 Heat of formation + Delta-G solvation = -39.565815 kcal Electronic energy + Delta-G solvation = -30178.029161 eV Core-core repulsion = 26077.466679 eV Total energy + Delta-G solvation = -4100.562482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81697 -40.33759 -38.52760 -35.54806 -35.01628 -34.56542 -33.99812 -32.53435 -30.93747 -30.13889 -28.48876 -27.75015 -27.36113 -25.49382 -24.44893 -23.47668 -23.38890 -22.22942 -21.13341 -19.69092 -19.17121 -17.59604 -17.32504 -17.12233 -17.08804 -16.42565 -15.87320 -15.81478 -15.19386 -14.87583 -14.75196 -14.56812 -14.39741 -14.05087 -13.90768 -13.53651 -13.44987 -13.33457 -13.27164 -12.98968 -12.94296 -12.76491 -12.70263 -12.45256 -12.12493 -11.99125 -11.86039 -11.43318 -11.31557 -11.14167 -10.85941 -10.73474 -10.55604 -10.29015 -10.10845 -9.98615 -9.84472 -9.82278 -9.76148 -9.64753 -9.18024 -8.89867 -8.52563 -6.93048 -5.73400 -3.02149 0.68510 0.87616 2.46055 2.75030 3.38266 3.45015 3.50727 3.52890 3.94736 3.98735 4.19095 4.32154 4.46695 4.55361 4.56945 4.58146 4.67328 4.70741 4.72868 4.83261 4.93890 5.06268 5.08646 5.10688 5.16491 5.18764 5.31125 5.33007 5.43875 5.45378 5.57053 5.59634 5.65591 5.69448 5.75318 5.79839 5.81270 5.92666 5.97821 5.97948 6.19442 6.32427 6.34082 6.45796 6.64731 6.81914 7.15193 7.22284 7.45761 7.60359 7.72758 7.99707 8.44781 9.56789 10.14279 10.50837 11.49085 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.001812 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.007690 B =15444.930916 C =15620.999823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C 0.091 3.909 4 N -0.479 5.479 5 C 0.096 3.904 6 C -0.127 4.127 7 C -0.061 4.061 8 C -0.133 4.133 9 C 0.515 3.485 10 O -0.540 6.540 11 N -0.613 5.613 12 C 0.072 3.928 13 C 0.045 3.955 14 O -0.358 6.358 15 C 0.076 3.924 16 H 0.063 0.937 17 C 0.185 3.815 18 H 0.059 0.941 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.082 3.918 30 C -0.075 4.075 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.053 0.947 44 H 0.034 0.966 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.389 0.611 48 H 0.254 0.746 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.590 13.407 9.702 30.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.066 4.066 4 N -0.187 5.187 5 C -0.061 4.061 6 C -0.129 4.129 7 C -0.100 4.100 8 C -0.173 4.173 9 C 0.303 3.697 10 O -0.417 6.417 11 N -0.348 5.348 12 C -0.052 4.052 13 C -0.033 4.033 14 O -0.275 6.275 15 C 0.017 3.983 16 H 0.081 0.919 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.041 4.041 30 C -0.101 4.101 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.223 0.777 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.118 0.882 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.804 13.707 10.137 30.098 hybrid contribution 0.312 -0.976 -0.147 1.035 sum -24.492 12.730 9.991 29.355 Atomic orbital electron populations 1.20733 0.90158 1.03226 1.02689 1.20953 0.97630 0.94148 1.01094 1.22680 0.90005 0.97486 0.96464 1.67703 1.08343 1.31258 1.11351 1.22732 1.00443 0.87097 0.95849 1.20930 0.94512 0.96708 1.00728 1.20284 1.00539 0.93501 0.95655 1.21675 1.00950 0.95805 0.98902 1.20615 0.80021 0.85889 0.83180 1.90712 1.55768 1.64521 1.30708 1.48213 1.54270 1.26480 1.05797 1.22518 0.98748 0.99333 0.84559 1.22899 0.92490 0.87464 1.00429 1.88108 1.75712 1.34052 1.29678 1.22985 0.93109 0.98512 0.83724 0.91871 1.20199 0.87353 0.89650 0.95415 0.92296 1.22411 0.98099 1.00606 1.01093 1.42361 1.11735 1.32542 1.49430 1.19300 0.92860 1.05087 1.19724 0.91095 1.24740 0.98342 0.98388 0.99488 1.69686 1.28500 1.29942 1.29766 0.86135 0.82831 0.80164 0.77169 1.20552 1.21912 1.21938 1.22503 0.93496 0.85637 1.02434 1.21436 0.93432 0.98300 0.96897 0.90840 0.91093 0.91239 0.82960 0.82711 0.89817 0.89528 0.88622 0.88828 0.90370 0.89201 0.87850 0.92826 0.94700 0.92447 0.92893 0.77690 0.93625 0.90164 0.88210 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.04 36.00 0.36 -0.07 16 2 C -0.14 -0.89 5.90 -104.49 -0.62 -1.51 16 3 C 0.09 0.70 10.86 -17.55 -0.19 0.51 16 4 N -0.48 -4.68 10.36 -13.25 -0.14 -4.82 16 5 C 0.10 0.83 10.86 -17.55 -0.19 0.64 16 6 C -0.13 -0.98 5.15 -104.48 -0.54 -1.52 16 7 C -0.06 -0.49 4.66 -27.88 -0.13 -0.62 16 8 C -0.13 -1.05 4.06 -27.88 -0.11 -1.16 16 9 C 0.51 6.17 7.71 -10.99 -0.08 6.08 16 10 O -0.54 -8.43 15.45 5.55 0.09 -8.34 16 11 N -0.61 -7.37 3.02 -172.25 -0.52 -7.89 16 12 C 0.07 0.67 6.54 -3.53 -0.02 0.64 16 13 C 0.05 0.53 6.99 37.31 0.26 0.79 16 14 O -0.36 -5.90 9.25 -35.23 -0.33 -6.23 16 15 C 0.08 1.28 2.61 -26.56 -0.07 1.21 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.18 3.68 2.77 -67.93 -0.19 3.49 16 18 H 0.06 1.18 8.08 -51.92 -0.42 0.76 16 19 C -0.16 -2.96 9.06 37.16 0.34 -2.63 16 20 N -0.72 -18.22 5.10 -53.42 -0.27 -18.50 16 21 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 C 0.08 1.16 5.82 -3.51 -0.02 1.14 16 30 C -0.07 -0.51 9.55 -39.28 -0.37 -0.89 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 34 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.08 0.70 8.05 -51.93 -0.42 0.29 16 37 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.10 0.65 7.66 -51.93 -0.40 0.25 16 39 H 0.09 0.58 8.02 -51.93 -0.42 0.16 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.57 6.05 -51.93 -0.31 0.26 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.53 6.42 -51.93 -0.33 0.19 16 45 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.39 10.64 7.59 -40.82 -0.31 10.33 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.08 1.09 6.27 -51.93 -0.33 0.77 16 50 H 0.10 1.52 7.08 -51.93 -0.37 1.15 16 51 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 411.29 15.07 6.20 6.20 Total: -1.00 -34.61 411.29 -9.40 -44.01 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.30 Total: 6.86 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.83 Total: -1.17 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.21 Total: -58.85 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.24 Total: -14.57 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.61 -9.40 -44.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734182198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.445 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds