Wall clock time and date at job start Wed Apr 1 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34589 * 119.47794 * 2 1 4 4 C 1.38004 * 120.46081 * 180.02562 * 3 2 1 5 5 C 1.47452 * 120.25996 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99738 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00260 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00081 * 179.97438 * 7 5 4 9 9 H 1.08987 * 109.49325 * 325.04733 * 8 7 5 10 10 C 1.50761 * 109.55471 * 85.17739 * 8 7 5 11 11 C 1.53947 * 110.13067 * 211.96136 * 10 8 7 12 12 N 1.47604 * 112.07105 * 319.27664 * 11 10 8 13 13 C 1.36942 * 118.63895 * 137.91974 * 12 11 10 14 14 H 1.07995 * 119.99643 * 205.53515 * 13 12 11 15 15 C 1.38803 * 120.00135 * 25.53300 * 13 12 11 16 16 N 1.31621 * 120.00330 * 17.90722 * 15 13 12 17 17 Si 1.86802 * 120.00233 * 197.90186 * 15 13 12 18 18 H 1.48507 * 109.46603 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47443 * 119.99963 * 17 15 13 20 20 H 1.48491 * 109.47344 * 240.00573 * 17 15 13 21 21 C 1.44575 * 122.71444 * 317.93790 * 12 11 10 22 22 C 1.54865 * 109.59795 * 90.70914 * 21 12 11 23 23 C 1.52995 * 109.32643 * 48.98531 * 22 21 12 24 24 C 1.52991 * 109.32819 * 168.64162 * 22 21 12 25 25 C 1.47101 * 110.31834 * 288.72963 * 22 21 12 26 26 C 1.41599 * 119.48205 * 0.22946 * 4 3 2 27 27 C 1.35977 * 119.01019 * 359.47203 * 26 4 3 28 28 C 1.34540 * 119.47548 * 180.02562 * 2 1 3 29 29 O 1.21957 * 119.75046 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.46749 * 89.99808 * 1 2 3 31 31 H 1.09002 * 109.47077 * 209.99815 * 1 2 3 32 32 H 1.08991 * 109.47095 * 330.00216 * 1 2 3 33 33 H 1.08001 * 119.77048 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99552 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.43858 * 91.69539 * 10 8 7 36 36 H 1.09006 * 109.25641 * 332.10809 * 10 8 7 37 37 H 1.09000 * 108.94091 * 198.63620 * 11 10 8 38 38 H 1.08993 * 108.94921 * 79.92119 * 11 10 8 39 39 H 0.96997 * 120.00292 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.44567 * 210.74646 * 21 12 11 41 41 H 1.09003 * 109.44915 * 330.66772 * 21 12 11 42 42 H 1.09004 * 109.47125 * 60.00859 * 23 22 21 43 43 H 1.09007 * 109.46818 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47692 * 300.00166 * 23 22 21 45 45 H 1.08996 * 109.47512 * 59.99688 * 24 22 21 46 46 H 1.09004 * 109.46982 * 179.97438 * 24 22 21 47 47 H 1.08998 * 109.47400 * 299.99741 * 24 22 21 48 48 H 1.08997 * 108.50933 * 184.05613 * 25 22 21 49 49 H 1.09003 * 108.50830 * 301.70059 * 25 22 21 50 50 H 1.08002 * 120.49242 * 179.74758 * 26 4 3 51 51 H 1.07997 * 120.25059 * 180.28485 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5072 1.1953 -0.0005 5 6 4.2283 2.4815 -0.0011 6 8 3.6069 3.5269 -0.0016 7 7 5.5759 2.4986 -0.0011 8 6 6.2923 3.7764 -0.0022 9 1 5.7356 4.5049 -0.5915 10 6 6.4348 4.2763 1.4130 11 6 6.4151 5.8154 1.4358 12 7 7.1861 6.3966 0.3193 13 6 6.6652 7.4733 -0.3476 14 1 6.9523 7.6651 -1.3709 15 6 5.7684 8.3181 0.2916 16 7 5.6813 8.3134 1.6049 17 14 4.6850 9.4620 -0.7121 18 1 4.9733 9.2756 -2.1569 19 1 3.2574 9.1497 -0.4484 20 1 4.9627 10.8695 -0.3290 21 6 8.4681 5.8759 -0.0995 22 6 8.2595 4.8007 -1.1944 23 6 7.3160 5.3473 -2.2676 24 6 9.6077 4.4589 -1.8318 25 6 7.6782 3.5824 -0.6098 26 6 4.2251 -0.0252 -0.0060 27 6 3.5345 -1.1965 0.0003 28 6 2.1270 -1.1713 -0.0005 29 8 1.5030 -2.2191 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.5751 2.0998 0.0004 34 1 6.0714 1.6647 -0.0011 35 1 7.3770 3.9205 1.8302 36 1 5.6090 3.8952 2.0137 37 1 6.8411 6.1608 2.3777 38 1 5.3823 6.1572 1.3684 39 1 5.0543 8.9035 2.0515 40 1 9.0765 6.6874 -0.4989 41 1 8.9754 5.4293 0.7558 42 1 7.7517 6.2416 -2.7132 43 1 7.1679 4.5924 -3.0399 44 1 6.3566 5.5975 -1.8148 45 1 10.2838 4.0750 -1.0679 46 1 9.4636 3.7018 -2.6027 47 1 10.0362 5.3559 -2.2787 48 1 7.6114 2.8228 -1.3887 49 1 8.3479 3.2192 0.1698 50 1 5.3051 -0.0257 -0.0106 51 1 4.0618 -2.1390 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089426310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:08 Heat of formation + Delta-G solvation = -9.728160 kcal Electronic energy + Delta-G solvation = -32055.795320 eV Core-core repulsion = 27956.526695 eV Total energy + Delta-G solvation = -4099.268625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.75689 -39.92755 -38.51473 -37.02712 -35.10081 -34.69152 -34.36943 -31.55196 -30.65927 -30.03930 -28.15282 -27.40267 -26.69084 -25.48242 -24.79577 -23.66051 -23.40878 -22.13119 -20.60635 -19.60620 -18.55831 -17.86390 -17.62023 -16.87705 -16.63851 -16.47397 -16.02208 -15.69058 -14.96766 -14.63508 -14.53600 -14.46107 -14.00030 -13.86235 -13.61879 -13.61290 -13.41040 -13.20330 -12.88052 -12.83313 -12.35862 -12.30836 -12.03947 -11.86753 -11.56794 -11.34209 -11.25026 -11.03973 -10.97079 -10.74874 -10.57391 -10.50671 -10.35577 -10.27247 -10.11909 -9.86677 -9.70682 -9.66449 -9.57021 -9.44979 -8.76599 -8.31384 -8.26572 -6.60893 -5.71658 -3.12900 0.47965 1.11929 2.18583 2.94077 3.35079 3.43059 3.51721 3.52357 3.59348 4.27506 4.34146 4.48573 4.57000 4.70279 4.74801 4.84236 4.97138 5.10646 5.20513 5.22963 5.45146 5.50595 5.55988 5.60619 5.65977 5.71776 5.79020 5.95945 6.00110 6.05443 6.13580 6.18125 6.24467 6.26537 6.35680 6.40245 6.49890 6.59015 6.63140 6.65323 6.77982 6.83342 6.87507 6.95285 7.10181 7.34031 7.47826 7.60726 7.73045 7.77187 7.92139 8.43773 8.53599 9.30421 9.98144 10.42047 11.36032 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003166 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.778322 B = 8840.571106 C =10259.780081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.492 5.492 3 C 0.205 3.795 4 C -0.247 4.247 5 C 0.569 3.431 6 O -0.531 6.531 7 N -0.721 5.721 8 C 0.150 3.850 9 H 0.112 0.888 10 C -0.147 4.147 11 C 0.182 3.818 12 N -0.587 5.587 13 C -0.256 4.256 14 H 0.070 0.930 15 C 0.006 3.994 16 N -0.901 5.901 17 Si 0.894 3.106 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.293 1.293 21 C 0.168 3.832 22 C -0.092 4.092 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.097 4.097 26 C 0.006 3.994 27 C -0.247 4.247 28 C 0.514 3.486 29 O -0.548 6.548 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.181 0.819 34 H 0.389 0.611 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.026 0.974 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.043 0.957 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.053 0.947 50 H 0.138 0.862 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 -16.720 -3.341 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.200 5.200 3 C 0.072 3.928 4 C -0.255 4.255 5 C 0.355 3.645 6 O -0.409 6.409 7 N -0.372 5.372 8 C 0.048 3.952 9 H 0.129 0.871 10 C -0.187 4.187 11 C 0.057 3.943 12 N -0.308 5.308 13 C -0.386 4.386 14 H 0.088 0.912 15 C -0.192 4.192 16 N -0.545 5.545 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.220 1.220 21 C 0.039 3.961 22 C -0.096 4.096 23 C -0.188 4.188 24 C -0.191 4.191 25 C -0.135 4.135 26 C -0.016 4.016 27 C -0.269 4.269 28 C 0.316 3.684 29 O -0.430 6.430 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.198 0.802 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.156 0.844 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.970 -16.559 -3.201 17.125 hybrid contribution -0.254 0.179 -0.415 0.518 sum -3.224 -16.380 -3.616 17.081 Atomic orbital electron populations 1.22312 0.76402 1.05552 1.04506 1.45219 1.09935 1.06854 1.57947 1.22370 0.93181 0.89923 0.87313 1.19595 0.92505 0.94758 1.18661 1.17561 0.82499 0.87562 0.76880 1.90879 1.67154 1.33059 1.49788 1.46158 1.05733 1.10150 1.75129 1.20643 0.92697 0.83739 0.98163 0.87064 1.22433 0.99991 1.01049 0.95271 1.20940 0.98085 0.85565 0.89722 1.43660 1.16662 1.32946 1.37498 1.19292 1.22681 1.02102 0.94487 0.91203 1.24972 1.01640 0.97567 0.95068 1.70086 1.37698 1.40196 1.06551 0.86357 0.81021 0.80341 0.79871 1.20283 1.21609 1.21988 1.20718 0.88276 0.93743 0.93314 1.20451 0.94387 0.96663 0.98076 1.21929 1.01522 0.98835 0.96518 1.21805 0.96989 1.00699 0.99652 1.20618 0.95196 0.98312 0.99393 1.21513 1.00587 0.91031 0.88446 1.21971 0.92287 1.00086 1.12552 1.17283 0.89556 0.82576 0.78965 1.90934 1.69627 1.29996 1.52423 0.90044 0.88389 0.88994 0.80202 0.77669 0.93615 0.92617 0.95716 0.90389 0.93871 0.93544 0.95069 0.93494 0.95501 0.89835 0.93413 0.93771 0.92834 0.93250 0.92828 0.84402 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 10.33 59.85 0.62 0.97 16 2 N -0.49 -4.72 2.95 -126.73 -0.37 -5.10 16 3 C 0.20 2.01 9.85 -16.43 -0.16 1.85 16 4 C -0.25 -2.71 5.88 -104.95 -0.62 -3.32 16 5 C 0.57 8.21 7.58 -12.51 -0.09 8.12 16 6 O -0.53 -10.05 15.98 5.27 0.08 -9.97 16 7 N -0.72 -9.50 4.88 -56.20 -0.27 -9.78 16 8 C 0.15 2.48 1.98 -69.28 -0.14 2.34 16 9 H 0.11 2.30 4.75 -51.94 -0.25 2.06 16 10 C -0.15 -2.69 5.37 -27.36 -0.15 -2.84 16 11 C 0.18 4.23 4.68 -2.94 -0.01 4.22 16 12 N -0.59 -13.62 1.86 -172.09 -0.32 -13.94 16 13 C -0.26 -6.64 7.62 -15.06 -0.11 -6.76 16 14 H 0.07 1.79 6.47 -52.49 -0.34 1.45 16 15 C 0.01 0.17 4.81 -17.43 -0.08 0.08 16 16 N -0.90 -25.83 11.10 55.49 0.62 -25.21 16 17 Si 0.89 21.78 29.59 -169.99 -5.03 16.75 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.17 3.26 4.70 -4.09 -0.02 3.24 16 22 C -0.09 -1.47 0.72 -156.36 -0.11 -1.58 16 23 C -0.13 -2.30 6.76 37.15 0.25 -2.05 16 24 C -0.13 -1.77 8.37 37.15 0.31 -1.45 16 25 C -0.10 -1.40 3.39 -29.78 -0.10 -1.50 16 26 C 0.01 0.05 9.57 -39.11 -0.37 -0.32 16 27 C -0.25 -2.42 9.97 -39.44 -0.39 -2.81 16 28 C 0.51 6.07 7.40 -15.41 -0.11 5.96 16 29 O -0.55 -8.13 16.58 4.96 0.08 -8.05 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.71 7.36 -51.93 -0.38 0.33 16 32 H 0.09 0.39 8.00 -51.93 -0.42 -0.03 16 33 H 0.18 1.56 7.57 -52.49 -0.40 1.17 16 34 H 0.39 3.76 6.66 -40.82 -0.27 3.49 16 35 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 36 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 37 H 0.02 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.08 2.10 6.33 -51.93 -0.33 1.77 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.05 0.94 7.96 -51.93 -0.41 0.52 16 41 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 42 H 0.05 0.84 7.55 -51.93 -0.39 0.45 16 43 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 1.74 4.45 -51.93 -0.23 1.51 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.63 8.00 -51.93 -0.42 0.21 16 49 H 0.05 0.72 7.34 -51.93 -0.38 0.34 16 50 H 0.14 0.84 6.48 -52.49 -0.34 0.50 16 51 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -33.29 390.50 -8.48 -41.78 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.85 Total: 3.49 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.30 Total: 4.14 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.35 Total: -54.02 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.29 -8.48 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089426310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.048 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds