Wall clock time and date at job start Wed Apr 1 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34589 * 119.47794 * 2 1 4 4 C 1.38004 * 120.46081 * 180.02562 * 3 2 1 5 5 C 1.47452 * 120.25996 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99738 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00260 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00081 * 179.97438 * 7 5 4 9 9 H 1.08987 * 109.49325 * 325.04733 * 8 7 5 10 10 C 1.50761 * 109.55471 * 85.17739 * 8 7 5 11 11 C 1.53947 * 110.13067 * 211.96136 * 10 8 7 12 12 N 1.47604 * 112.07105 * 319.27664 * 11 10 8 13 13 C 1.36942 * 118.63895 * 137.91974 * 12 11 10 14 14 H 1.07995 * 119.99643 * 205.53515 * 13 12 11 15 15 C 1.38803 * 120.00135 * 25.53300 * 13 12 11 16 16 N 1.31621 * 120.00330 * 17.90722 * 15 13 12 17 17 Si 1.86802 * 120.00233 * 197.90186 * 15 13 12 18 18 H 1.48507 * 109.46603 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47443 * 119.99963 * 17 15 13 20 20 H 1.48491 * 109.47344 * 240.00573 * 17 15 13 21 21 C 1.44575 * 122.71444 * 317.93790 * 12 11 10 22 22 C 1.54865 * 109.59795 * 90.70914 * 21 12 11 23 23 C 1.52995 * 109.32643 * 48.98531 * 22 21 12 24 24 C 1.52991 * 109.32819 * 168.64162 * 22 21 12 25 25 C 1.47101 * 110.31834 * 288.72963 * 22 21 12 26 26 C 1.41599 * 119.48205 * 0.22946 * 4 3 2 27 27 C 1.35977 * 119.01019 * 359.47203 * 26 4 3 28 28 C 1.34540 * 119.47548 * 180.02562 * 2 1 3 29 29 O 1.21957 * 119.75046 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.46749 * 89.99808 * 1 2 3 31 31 H 1.09002 * 109.47077 * 209.99815 * 1 2 3 32 32 H 1.08991 * 109.47095 * 330.00216 * 1 2 3 33 33 H 1.08001 * 119.77048 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99552 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.43858 * 91.69539 * 10 8 7 36 36 H 1.09006 * 109.25641 * 332.10809 * 10 8 7 37 37 H 1.09000 * 108.94091 * 198.63620 * 11 10 8 38 38 H 1.08993 * 108.94921 * 79.92119 * 11 10 8 39 39 H 0.96997 * 120.00292 * 180.02562 * 16 15 13 40 40 H 1.09006 * 109.44567 * 210.74646 * 21 12 11 41 41 H 1.09003 * 109.44915 * 330.66772 * 21 12 11 42 42 H 1.09004 * 109.47125 * 60.00859 * 23 22 21 43 43 H 1.09007 * 109.46818 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.47692 * 300.00166 * 23 22 21 45 45 H 1.08996 * 109.47512 * 59.99688 * 24 22 21 46 46 H 1.09004 * 109.46982 * 179.97438 * 24 22 21 47 47 H 1.08998 * 109.47400 * 299.99741 * 24 22 21 48 48 H 1.08997 * 108.50933 * 184.05613 * 25 22 21 49 49 H 1.09003 * 108.50830 * 301.70059 * 25 22 21 50 50 H 1.08002 * 120.49242 * 179.74758 * 26 4 3 51 51 H 1.07997 * 120.25059 * 180.28485 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5072 1.1953 -0.0005 5 6 4.2283 2.4815 -0.0011 6 8 3.6069 3.5269 -0.0016 7 7 5.5759 2.4986 -0.0011 8 6 6.2923 3.7764 -0.0022 9 1 5.7356 4.5049 -0.5915 10 6 6.4348 4.2763 1.4130 11 6 6.4151 5.8154 1.4358 12 7 7.1861 6.3966 0.3193 13 6 6.6652 7.4733 -0.3476 14 1 6.9523 7.6651 -1.3709 15 6 5.7684 8.3181 0.2916 16 7 5.6813 8.3134 1.6049 17 14 4.6850 9.4620 -0.7121 18 1 4.9733 9.2756 -2.1569 19 1 3.2574 9.1497 -0.4484 20 1 4.9627 10.8695 -0.3290 21 6 8.4681 5.8759 -0.0995 22 6 8.2595 4.8007 -1.1944 23 6 7.3160 5.3473 -2.2676 24 6 9.6077 4.4589 -1.8318 25 6 7.6782 3.5824 -0.6098 26 6 4.2251 -0.0252 -0.0060 27 6 3.5345 -1.1965 0.0003 28 6 2.1270 -1.1713 -0.0005 29 8 1.5030 -2.2191 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.5751 2.0998 0.0004 34 1 6.0714 1.6647 -0.0011 35 1 7.3770 3.9205 1.8302 36 1 5.6090 3.8952 2.0137 37 1 6.8411 6.1608 2.3777 38 1 5.3823 6.1572 1.3684 39 1 5.0543 8.9035 2.0515 40 1 9.0765 6.6874 -0.4989 41 1 8.9754 5.4293 0.7558 42 1 7.7517 6.2416 -2.7132 43 1 7.1679 4.5924 -3.0399 44 1 6.3566 5.5975 -1.8148 45 1 10.2838 4.0750 -1.0679 46 1 9.4636 3.7018 -2.6027 47 1 10.0362 5.3559 -2.2787 48 1 7.6114 2.8228 -1.3887 49 1 8.3479 3.2192 0.1698 50 1 5.3051 -0.0257 -0.0106 51 1 4.0618 -2.1390 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089426310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:06 Heat of formation + Delta-G solvation = -30.898304 kcal Electronic energy + Delta-G solvation = -32056.713326 eV Core-core repulsion = 27956.526695 eV Total energy + Delta-G solvation = -4100.186631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.59331 -41.19627 -39.82926 -37.98949 -36.31675 -35.97660 -35.70217 -33.22049 -32.21106 -31.03176 -29.04708 -28.51215 -28.14306 -27.16015 -25.82734 -25.17055 -24.22065 -23.55966 -21.82427 -21.10750 -19.77589 -18.95951 -18.59214 -18.48233 -17.79606 -17.27375 -17.15896 -16.77246 -16.54461 -16.13213 -15.76390 -15.50550 -15.31316 -15.28292 -15.12643 -14.64517 -14.46243 -14.33285 -14.20319 -13.76613 -13.48218 -13.40700 -13.16536 -13.09564 -12.98673 -12.75842 -12.70282 -12.65913 -12.53170 -12.37438 -12.18516 -11.95150 -11.73782 -11.40697 -11.33479 -11.26140 -11.21065 -11.20223 -10.98182 -10.90446 -10.35232 -10.01079 -9.14627 -8.55587 -7.78550 -5.19769 -0.28086 0.23853 1.42484 1.43598 1.48035 1.55214 1.95182 2.27785 2.55844 2.67264 3.35550 3.52414 3.60518 3.73477 3.79280 3.79769 3.89014 4.05371 4.07854 4.22559 4.33744 4.35620 4.42017 4.52398 4.66869 4.68937 4.78154 4.86238 4.92089 4.92860 4.94989 4.98004 5.03216 5.03635 5.06184 5.16941 5.17191 5.29305 5.29946 5.36941 5.43909 5.53486 5.60987 5.66262 5.74285 5.79172 5.81712 5.86742 5.91881 6.48896 6.67392 6.75696 7.26620 7.36940 8.04918 8.42628 9.26821 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003166 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.778322 B = 8840.571106 C =10259.780081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.487 5.487 3 C 0.214 3.786 4 C -0.255 4.255 5 C 0.569 3.431 6 O -0.585 6.585 7 N -0.705 5.705 8 C 0.159 3.841 9 H 0.068 0.932 10 C -0.132 4.132 11 C 0.196 3.804 12 N -0.596 5.596 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.053 4.053 16 N -0.935 5.935 17 Si 0.946 3.054 18 H -0.266 1.266 19 H -0.300 1.300 20 H -0.294 1.294 21 C 0.161 3.839 22 C -0.082 4.082 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.095 4.095 26 C 0.023 3.977 27 C -0.254 4.254 28 C 0.501 3.499 29 O -0.587 6.587 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.189 0.811 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.049 0.951 37 H -0.008 1.008 38 H 0.030 0.970 39 H 0.243 0.757 40 H 0.034 0.966 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.172 0.828 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -19.397 -4.768 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.193 5.193 3 C 0.080 3.920 4 C -0.264 4.264 5 C 0.357 3.643 6 O -0.466 6.466 7 N -0.357 5.357 8 C 0.055 3.945 9 H 0.086 0.914 10 C -0.172 4.172 11 C 0.070 3.930 12 N -0.317 5.317 13 C -0.371 4.371 14 H 0.089 0.911 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.776 3.224 18 H -0.190 1.190 19 H -0.228 1.228 20 H -0.221 1.221 21 C 0.034 3.966 22 C -0.085 4.085 23 C -0.183 4.183 24 C -0.185 4.185 25 C -0.133 4.133 26 C 0.002 3.998 27 C -0.275 4.275 28 C 0.306 3.694 29 O -0.472 6.472 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.206 0.794 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.010 0.990 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.190 0.810 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.074 -19.283 -4.664 19.868 hybrid contribution -0.832 1.031 0.011 1.325 sum -1.906 -18.252 -4.653 18.932 Atomic orbital electron populations 1.22563 0.74754 1.06451 1.05644 1.45300 1.11108 1.06263 1.56647 1.22514 0.93247 0.90185 0.86103 1.19377 0.92848 0.93894 1.20259 1.17998 0.82723 0.87965 0.75595 1.90870 1.68227 1.35265 1.52235 1.45860 1.05433 1.10003 1.74404 1.20265 0.93876 0.84346 0.96030 0.91389 1.22223 1.01040 0.96927 0.97043 1.20580 0.95024 0.89028 0.88361 1.43782 1.18213 1.32617 1.37137 1.19545 1.21393 1.01787 0.94421 0.91118 1.25596 1.03582 0.99736 0.95828 1.70227 1.38700 1.41520 1.07790 0.85513 0.78933 0.78674 0.79303 1.19035 1.22794 1.22146 1.20958 0.86212 0.94547 0.94862 1.20300 0.96063 0.95867 0.96281 1.21835 0.99913 0.99211 0.97373 1.21736 0.94914 1.01280 1.00521 1.20574 0.93628 0.98185 1.00889 1.21696 1.02055 0.89394 0.86674 1.22093 0.91354 1.01159 1.12933 1.17720 0.90509 0.82501 0.78713 1.90913 1.70508 1.31255 1.54558 0.88825 0.89161 0.86457 0.79382 0.74987 0.91070 0.93216 0.98972 0.95135 0.94781 0.94755 0.93877 0.94683 0.93168 0.93619 0.91636 0.91564 0.93300 0.90114 0.90492 0.81020 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.33 127.77 1.32 1.87 16 2 N -0.49 -8.71 2.95 -673.10 -1.99 -10.70 16 3 C 0.21 3.89 9.85 84.21 0.83 4.72 16 4 C -0.26 -5.07 5.88 -20.08 -0.12 -5.18 16 5 C 0.57 15.67 7.58 86.67 0.66 16.33 16 6 O -0.58 -22.53 15.98 -4.08 -0.07 -22.59 16 7 N -0.71 -16.61 4.88 -449.96 -2.20 -18.81 16 8 C 0.16 4.96 1.98 44.12 0.09 5.05 16 9 H 0.07 2.83 4.75 -2.39 -0.01 2.82 16 10 C -0.13 -4.75 5.37 30.19 0.16 -4.59 16 11 C 0.20 9.46 4.68 86.49 0.40 9.87 16 12 N -0.60 -28.23 1.86 -698.38 -1.30 -29.53 16 13 C -0.24 -12.87 7.62 84.03 0.64 -12.23 16 14 H 0.07 3.70 6.47 -2.91 -0.02 3.68 16 15 C -0.05 -3.00 4.81 84.86 0.41 -2.59 16 16 N -0.93 -56.55 11.10 21.65 0.24 -56.31 16 17 Si 0.95 46.55 29.59 68.60 2.03 48.58 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 20 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 21 C 0.16 6.05 4.70 87.38 0.41 6.46 16 22 C -0.08 -2.37 0.72 -53.38 -0.04 -2.41 16 23 C -0.13 -4.24 6.76 71.98 0.49 -3.75 16 24 C -0.13 -2.76 8.37 71.98 0.60 -2.16 16 25 C -0.10 -2.33 3.39 28.62 0.10 -2.24 16 26 C 0.02 0.33 9.57 22.57 0.22 0.55 16 27 C -0.25 -4.31 9.97 22.36 0.22 -4.09 16 28 C 0.50 11.21 7.40 84.90 0.63 11.84 16 29 O -0.59 -17.16 16.58 -5.18 -0.09 -17.25 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.28 7.36 -2.39 -0.02 1.26 16 32 H 0.12 0.79 8.00 -2.39 -0.02 0.78 16 33 H 0.19 3.12 7.57 -2.91 -0.02 3.09 16 34 H 0.41 5.97 6.66 -92.71 -0.62 5.35 16 35 H 0.07 2.20 7.31 -2.38 -0.02 2.18 16 36 H 0.05 1.83 7.84 -2.38 -0.02 1.81 16 37 H -0.01 -0.42 8.05 -2.39 -0.02 -0.43 16 38 H 0.03 1.75 6.33 -2.39 -0.02 1.73 16 39 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.03 1.36 7.96 -2.38 -0.02 1.34 16 41 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 42 H 0.03 1.22 7.55 -2.38 -0.02 1.20 16 43 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.04 1.90 4.45 -2.39 -0.01 1.89 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.08 1.57 8.00 -2.39 -0.02 1.55 16 49 H 0.08 1.62 7.34 -2.39 -0.02 1.60 16 50 H 0.17 1.19 6.48 -2.91 -0.02 1.18 16 51 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -78.72 390.50 3.99 -74.73 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.33 Total: 14.42 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.02 Total: 17.45 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -5.24 Total: -115.34 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.15 Total: -39.84 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -78.72 3.99 -74.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089426310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.835 kcal (2) G-P(sol) polarization free energy of solvation -78.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds