Wall clock time and date at job start Wed Apr 1 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.51887 * 121.19343 * 2 1 4 4 C 1.53896 * 107.28477 * 134.33187 * 3 2 1 5 5 H 1.09010 * 111.94546 * 182.18249 * 4 3 2 6 6 C 1.54460 * 108.46180 * 306.29607 * 4 3 2 7 7 C 1.54230 * 104.97496 * 90.44114 * 6 4 3 8 8 C 1.54865 * 104.93376 * 359.81288 * 7 6 4 9 9 H 1.08995 * 112.09786 * 145.69710 * 8 7 6 10 10 C 1.51542 * 121.03650 * 180.64345 * 2 1 3 11 11 N 1.48188 * 107.42440 * 58.78084 * 4 3 2 12 12 C 1.34775 * 127.84488 * 104.60177 * 11 4 3 13 13 O 1.21352 * 120.00039 * 0.02562 * 12 11 4 14 14 C 1.49451 * 119.99934 * 180.02562 * 12 11 4 15 15 O 1.21352 * 120.00027 * 0.02562 * 14 12 11 16 16 N 1.34780 * 119.99624 * 179.72510 * 14 12 11 17 17 C 1.46501 * 119.99549 * 179.97438 * 16 14 12 18 18 C 1.53045 * 109.46263 * 275.06474 * 17 16 14 19 19 C 1.53187 * 109.31175 * 178.61569 * 18 17 16 20 20 N 1.46924 * 108.77821 * 54.63990 * 19 18 17 21 21 C 1.36935 * 120.63289 * 126.40960 * 20 19 18 22 22 H 1.08003 * 120.00006 * 332.60913 * 21 20 19 23 23 C 1.38814 * 120.00311 * 152.60547 * 21 20 19 24 24 N 1.31614 * 120.00410 * 159.35939 * 23 21 20 25 25 Si 1.86803 * 119.99617 * 339.36286 * 23 21 20 26 26 H 1.48503 * 109.46915 * 92.90886 * 25 23 21 27 27 H 1.48499 * 109.46973 * 212.90740 * 25 23 21 28 28 H 1.48496 * 109.47151 * 332.91342 * 25 23 21 29 29 C 1.46927 * 118.73779 * 306.38858 * 20 19 18 30 30 C 1.53044 * 109.45758 * 155.00069 * 17 16 14 31 31 H 1.08009 * 119.99617 * 179.35604 * 1 2 3 32 32 H 1.07994 * 120.00221 * 359.35388 * 1 2 3 33 33 H 1.09004 * 109.44719 * 15.24558 * 3 2 1 34 34 H 1.08998 * 110.62155 * 254.08185 * 3 2 1 35 35 H 1.09002 * 110.34051 * 209.31853 * 6 4 3 36 36 H 1.09004 * 110.34151 * 331.45896 * 6 4 3 37 37 H 1.09000 * 110.34377 * 118.87648 * 7 6 4 38 38 H 1.09003 * 110.34247 * 241.02030 * 7 6 4 39 39 H 1.09002 * 109.80307 * 105.85025 * 10 2 1 40 40 H 1.09003 * 109.79475 * 344.98598 * 10 2 1 41 41 H 0.96993 * 120.00281 * 0.02562 * 16 14 12 42 42 H 1.08998 * 109.46321 * 35.02611 * 17 16 14 43 43 H 1.08993 * 109.50015 * 298.57186 * 18 17 16 44 44 H 1.09004 * 109.49354 * 58.66827 * 18 17 16 45 45 H 1.09006 * 109.58812 * 294.84796 * 19 18 17 46 46 H 1.09001 * 109.58622 * 174.42569 * 19 18 17 47 47 H 0.97000 * 120.00150 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.58541 * 293.82370 * 29 20 19 49 49 H 1.08995 * 109.58826 * 173.39232 * 29 20 19 50 50 H 1.08996 * 109.49556 * 301.33380 * 30 17 16 51 51 H 1.08999 * 109.49788 * 61.43303 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0966 1.2993 0.0000 4 6 3.2118 1.1586 1.0511 5 1 3.8037 2.0695 1.1415 6 6 2.5689 0.7497 2.3947 7 6 2.5724 -0.7926 2.3852 8 6 3.2146 -1.1819 1.0308 9 1 3.8086 -2.0927 1.1054 10 6 2.0912 -1.2984 -0.0146 11 7 4.0410 -0.0073 0.6650 12 6 5.2661 -0.0010 0.1033 13 8 5.8154 1.0528 -0.1427 14 6 5.9481 -1.2917 -0.2166 15 8 5.3986 -2.3455 0.0289 16 7 7.1710 -1.2853 -0.7834 17 6 7.8397 -2.5506 -1.0965 18 6 8.5771 -3.0584 0.1447 19 6 9.2463 -4.3985 -0.1764 20 7 10.1016 -4.2286 -1.3589 21 6 11.4215 -4.5917 -1.3234 22 1 11.9593 -4.5814 -0.3868 23 6 12.0681 -4.9732 -2.4909 24 7 13.3818 -4.9296 -2.5601 25 14 11.0739 -5.5482 -3.9641 26 1 10.8023 -4.3945 -4.8588 27 1 11.8409 -6.5805 -4.7065 28 1 9.7880 -6.1266 -3.4981 29 6 9.5137 -3.6622 -2.5805 30 6 8.8414 -2.3303 -2.2325 31 1 -0.5400 -0.9354 -0.0105 32 1 -0.5400 0.9352 0.0105 33 1 1.4362 2.1233 0.2703 34 1 2.5347 1.4828 -0.9810 35 1 3.1624 1.1248 3.2285 36 1 1.5483 1.1274 2.4569 37 1 3.1677 -1.1753 3.2142 38 1 1.5531 -1.1742 2.4437 39 1 2.5216 -1.4593 -1.0030 40 1 1.4328 -2.1284 0.2418 41 1 7.6085 -0.4431 -0.9833 42 1 7.0976 -3.2872 -1.4045 43 1 9.3363 -2.3338 0.4387 44 1 7.8666 -3.1929 0.9603 45 1 8.4824 -5.1483 -0.3826 46 1 9.8536 -4.7160 0.6712 47 1 13.8336 -5.1958 -3.3761 48 1 8.7717 -4.3519 -2.9827 49 1 10.2974 -3.4938 -3.3191 50 1 8.3191 -1.9466 -3.1088 51 1 9.5982 -1.6125 -1.9161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118611955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:49 Heat of formation + Delta-G solvation = -14.054153 kcal Electronic energy + Delta-G solvation = -31630.192387 eV Core-core repulsion = 27530.736174 eV Total energy + Delta-G solvation = -4099.456214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -41.45622 -39.94519 -38.36254 -37.59744 -34.92386 -34.38371 -32.23914 -32.08509 -31.75684 -30.51015 -30.19838 -28.01371 -25.94571 -24.91536 -24.32428 -23.00149 -22.27827 -21.46030 -20.96946 -20.39840 -19.74598 -18.62391 -17.41524 -17.05880 -16.75821 -16.33186 -15.94831 -15.62814 -15.19789 -14.89510 -14.60767 -14.46678 -14.21221 -14.11310 -13.86899 -13.80171 -13.60023 -13.31735 -13.10376 -12.97814 -12.88065 -12.45633 -12.42030 -12.19095 -12.04025 -11.84751 -11.76377 -11.55954 -11.25059 -11.02747 -10.87357 -10.83519 -10.76319 -10.62426 -10.35013 -10.16002 -9.86523 -9.69015 -9.53189 -9.44962 -9.02874 -8.92914 -8.65803 -7.02792 -5.96949 -3.33357 1.33355 1.88107 2.11237 3.13820 3.29620 3.33151 3.47460 3.50046 4.05161 4.13125 4.34386 4.45749 4.50625 4.54997 4.59962 4.65983 4.84556 4.91146 4.97913 5.07110 5.09440 5.25415 5.31979 5.34010 5.34960 5.43812 5.47937 5.52951 5.55697 5.58208 5.66595 5.68726 5.73460 5.76185 5.91877 5.98231 6.01155 6.11233 6.22758 6.24013 6.31867 6.46177 6.53458 6.54481 6.60708 6.61959 6.85393 7.02633 7.22791 7.63021 7.93066 7.96970 8.30724 8.90916 9.69247 10.06130 11.18898 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.002299 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.343486 B =12177.189810 C =12308.312053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.095 4.095 4 C 0.134 3.866 5 H 0.104 0.896 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.120 3.880 9 H 0.136 0.864 10 C -0.094 4.094 11 N -0.589 5.589 12 C 0.527 3.473 13 O -0.524 6.524 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.690 5.690 17 C 0.149 3.851 18 C -0.142 4.142 19 C 0.152 3.848 20 N -0.606 5.606 21 C -0.260 4.260 22 H 0.086 0.914 23 C 0.023 3.977 24 N -0.907 5.907 25 Si 0.881 3.119 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.270 1.270 29 C 0.130 3.870 30 C -0.142 4.142 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.410 0.590 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.026 0.974 46 H 0.067 0.933 47 H 0.263 0.737 48 H 0.029 0.971 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.714 12.163 7.995 30.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.114 4.114 3 C -0.133 4.133 4 C 0.031 3.969 5 H 0.122 0.878 6 C -0.165 4.165 7 C -0.168 4.168 8 C 0.017 3.983 9 H 0.153 0.847 10 C -0.132 4.132 11 N -0.323 5.323 12 C 0.311 3.689 13 O -0.400 6.400 14 C 0.289 3.711 15 O -0.396 6.396 16 N -0.341 5.341 17 C 0.046 3.954 18 C -0.182 4.182 19 C 0.025 3.975 20 N -0.330 5.330 21 C -0.389 4.389 22 H 0.104 0.896 23 C -0.176 4.176 24 N -0.550 5.550 25 Si 0.712 3.288 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.195 1.195 29 C 0.003 3.997 30 C -0.182 4.182 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.245 0.755 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.046 0.954 49 H 0.097 0.903 50 H 0.080 0.920 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.497 11.911 7.900 30.106 hybrid contribution -0.326 0.175 -1.087 1.149 sum -26.823 12.086 6.812 30.199 Atomic orbital electron populations 1.23570 0.94690 1.01928 1.03123 1.22006 0.94919 0.95491 0.98983 1.21475 0.96605 0.95450 0.99797 1.22308 0.90579 0.90162 0.93850 0.87847 1.22519 1.01448 0.96252 0.96323 1.22636 1.01637 0.95539 0.96955 1.22934 0.91138 0.90937 0.93269 0.84683 1.21386 0.96707 0.95107 1.00013 1.48928 1.14986 1.09544 1.58858 1.19982 0.80640 0.89930 0.78381 1.90763 1.64205 1.32752 1.52240 1.19933 0.82684 0.89025 0.79451 1.90641 1.64647 1.32374 1.51977 1.46157 1.16763 1.11560 1.59612 1.21187 0.94158 0.83923 0.96127 1.22411 0.99192 1.00268 0.96359 1.20890 0.93129 0.92747 0.90714 1.44410 1.08239 1.71612 1.08707 1.18923 0.83524 1.39788 0.96623 0.89601 1.25290 0.95243 0.99239 0.97828 1.69832 1.07301 1.49949 1.27920 0.86975 0.80345 0.78366 0.83142 1.21596 1.23092 1.19471 1.21322 0.96551 0.91184 0.90626 1.22380 0.97837 1.01314 0.96638 0.88276 0.88444 0.89972 0.90249 0.90893 0.89975 0.90800 0.90046 0.90378 0.89830 0.75462 0.89411 0.91542 0.92159 0.95596 0.91427 0.92734 0.95358 0.90341 0.92005 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 14.01 29.02 0.41 -0.80 16 2 C -0.11 -0.83 4.10 -100.06 -0.41 -1.24 16 3 C -0.10 -0.71 5.69 -26.83 -0.15 -0.86 16 4 C 0.13 1.13 4.01 -65.77 -0.26 0.86 16 5 H 0.10 0.92 7.92 -51.92 -0.41 0.50 16 6 C -0.13 -0.83 6.08 -25.32 -0.15 -0.98 16 7 C -0.13 -0.90 6.11 -25.10 -0.15 -1.06 16 8 C 0.12 1.11 3.66 -65.55 -0.24 0.87 16 9 H 0.14 1.48 5.47 -51.93 -0.28 1.20 16 10 C -0.09 -0.78 5.62 -27.00 -0.15 -0.93 16 11 N -0.59 -6.31 2.72 -153.56 -0.42 -6.73 16 12 C 0.53 6.97 7.98 -11.59 -0.09 6.88 16 13 O -0.52 -7.88 16.77 5.49 0.09 -7.79 16 14 C 0.51 7.14 7.83 -11.58 -0.09 7.05 16 15 O -0.52 -7.87 13.43 5.49 0.07 -7.80 16 16 N -0.69 -9.58 5.07 -54.19 -0.27 -9.85 16 17 C 0.15 2.34 2.42 -67.88 -0.16 2.18 16 18 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 19 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 20 N -0.61 -14.09 2.77 -172.32 -0.48 -14.56 16 21 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 22 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 23 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 24 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 25 Si 0.88 22.06 24.35 -169.99 -4.14 17.92 16 26 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16 27 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 28 H -0.27 -6.63 6.63 56.52 0.38 -6.26 16 29 C 0.13 2.73 4.20 -3.71 -0.02 2.72 16 30 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 31 H 0.10 0.55 7.97 -52.48 -0.42 0.13 16 32 H 0.10 0.51 7.97 -52.49 -0.42 0.09 16 33 H 0.08 0.46 7.96 -51.93 -0.41 0.04 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.43 7.72 -51.93 -0.40 0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.57 7.96 -51.93 -0.41 0.16 16 41 H 0.41 5.27 8.07 -40.82 -0.33 4.94 16 42 H 0.09 1.46 7.57 -51.93 -0.39 1.07 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.03 0.59 7.07 -51.93 -0.37 0.23 16 49 H 0.08 1.81 4.50 -51.93 -0.23 1.58 16 50 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -31.53 389.62 -8.86 -40.38 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -8.31 Total: 3.53 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.05 Total: 5.82 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.39 Total: -57.93 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.17 Total: -15.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.53 -8.86 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118611955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.329 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds