Wall clock time and date at job start Wed Apr 1 2020 04:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38601 * 120.32683 * 2 1 4 4 N 1.31494 * 120.89978 * 180.02562 * 3 2 1 5 5 C 1.32746 * 121.64539 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72239 * 179.97438 * 5 4 3 7 7 O 1.21520 * 120.00094 * 104.10699 * 6 5 4 8 8 N 1.34770 * 119.99817 * 284.09888 * 6 5 4 9 9 C 1.46923 * 120.63092 * 355.11402 * 8 6 5 10 10 C 1.53192 * 108.77831 * 126.36867 * 9 8 6 11 11 C 1.53042 * 109.31314 * 54.63000 * 10 9 8 12 12 C 1.53043 * 109.53986 * 298.63981 * 11 10 9 13 13 H 1.08996 * 109.52122 * 301.39887 * 12 11 10 14 14 N 1.46503 * 109.49433 * 181.31594 * 12 11 10 15 15 C 1.36934 * 119.99771 * 300.15535 * 14 12 11 16 16 H 1.08005 * 119.99954 * 36.65585 * 15 14 12 17 17 C 1.38812 * 119.99907 * 216.91704 * 15 14 12 18 18 N 1.31616 * 119.99844 * 20.04335 * 17 15 14 19 19 Si 1.86802 * 119.99978 * 200.03626 * 17 15 14 20 20 H 1.48493 * 109.47333 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47192 * 120.00726 * 19 17 15 22 22 H 1.48503 * 109.47244 * 240.00434 * 19 17 15 23 23 C 1.46495 * 119.99701 * 120.16368 * 14 12 11 24 24 C 1.53004 * 109.47105 * 274.99738 * 23 14 12 25 25 O 1.42899 * 109.46972 * 65.00247 * 24 23 14 26 26 C 1.46930 * 120.63154 * 175.09107 * 8 6 5 27 27 C 1.39272 * 120.55378 * 0.24909 * 5 4 3 28 28 C 1.50693 * 120.46975 * 179.72613 * 27 5 4 29 29 C 1.38581 * 120.32155 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46957 * 89.99351 * 1 2 3 31 31 H 1.08991 * 109.47194 * 210.00419 * 1 2 3 32 32 H 1.09005 * 109.46265 * 330.00505 * 1 2 3 33 33 H 1.07994 * 119.54839 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.58845 * 246.15242 * 9 8 6 35 35 H 1.08994 * 109.58861 * 6.58063 * 9 8 6 36 36 H 1.08998 * 109.50482 * 174.58471 * 10 9 8 37 37 H 1.09005 * 109.49414 * 294.65134 * 10 9 8 38 38 H 1.09002 * 109.46157 * 178.61226 * 11 10 9 39 39 H 1.08998 * 109.45653 * 58.66002 * 11 10 9 40 40 H 0.97006 * 119.99917 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.47767 * 34.99897 * 23 14 12 42 42 H 1.09002 * 109.46845 * 154.99714 * 23 14 12 43 43 H 1.08999 * 109.46900 * 185.00179 * 24 23 14 44 44 H 1.08996 * 109.46783 * 304.99949 * 24 23 14 45 45 H 0.96698 * 113.99497 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.58856 * 113.84437 * 26 8 6 47 47 H 1.08998 * 109.70228 * 353.48484 * 26 8 6 48 48 H 1.08999 * 109.47469 * 92.95595 * 28 27 5 49 49 H 1.09004 * 109.46998 * 212.95631 * 28 27 5 50 50 H 1.09003 * 109.47093 * 332.95137 * 28 27 5 51 51 H 1.08003 * 120.75796 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1963 0.0000 4 7 3.5218 1.2095 -0.0005 5 6 4.2295 0.0864 -0.0015 6 6 5.7098 0.1510 -0.0026 7 8 6.3288 -0.0793 1.0174 8 7 6.3697 0.4648 -1.1350 9 6 5.6438 0.6409 -2.4002 10 6 6.0056 2.0075 -2.9903 11 6 7.5268 2.1170 -3.1179 12 6 8.1661 2.0047 -1.7319 13 1 7.7784 2.7933 -1.0870 14 7 9.6198 2.1411 -1.8516 15 6 10.3297 1.2563 -2.6186 16 1 9.9067 0.8778 -3.5375 17 6 11.5905 0.8416 -2.2123 18 7 11.9481 0.9613 -0.9513 19 14 12.7798 0.1134 -3.4553 20 1 12.1413 0.0889 -4.7957 21 1 14.0100 0.9435 -3.5085 22 1 13.1337 -1.2707 -3.0498 23 6 10.3140 3.2241 -1.1506 24 6 10.2719 4.4934 -2.0039 25 8 8.9190 4.9343 -2.1353 26 6 7.8287 0.6380 -1.1277 27 6 3.5923 -1.1520 -0.0073 28 6 4.3976 -2.4256 -0.0147 29 6 2.2067 -1.1962 -0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3632 0.8901 0.5138 33 1 1.6649 2.1304 0.0004 34 1 5.9300 -0.1458 -3.0982 35 1 4.5706 0.5954 -2.2151 36 1 5.5496 2.1110 -3.9749 37 1 5.6374 2.7961 -2.3341 38 1 7.7857 3.0789 -3.5605 39 1 7.8965 1.3133 -3.7546 40 1 12.8291 0.6712 -0.6673 41 1 9.8234 3.4119 -0.1956 42 1 11.3512 2.9377 -0.9761 43 1 10.8633 5.2733 -1.5243 44 1 10.6825 4.2812 -2.9910 45 1 8.8166 5.7364 -2.6656 46 1 8.2931 -0.1490 -1.7220 47 1 8.1994 0.5897 -0.1038 48 1 4.5480 -2.7664 1.0097 49 1 3.8623 -3.1907 -0.5772 50 1 5.3649 -2.2412 -0.4820 51 1 1.6844 -2.1416 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489161286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:07 Heat of formation + Delta-G solvation = -31.987764 kcal Electronic energy + Delta-G solvation = -32099.982524 eV Core-core repulsion = 27999.748650 eV Total energy + Delta-G solvation = -4100.233874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.88190 -39.18475 -37.35942 -36.16906 -34.63926 -33.82927 -33.77367 -32.09950 -31.17501 -29.72595 -28.08577 -27.63826 -27.05279 -24.99365 -24.22621 -23.41083 -22.23171 -21.70788 -20.63490 -19.96024 -18.96596 -17.36996 -17.06966 -16.74123 -16.18698 -16.05978 -14.96692 -14.94766 -14.57968 -14.53962 -14.39363 -14.20449 -13.71744 -13.64994 -13.43057 -13.33706 -13.28297 -13.19425 -12.84227 -12.77071 -12.59655 -12.53518 -12.48892 -12.21101 -11.82537 -11.70552 -11.23323 -11.04670 -11.02381 -10.65364 -10.55590 -10.38516 -10.21148 -10.01829 -9.85836 -9.81584 -9.76121 -9.52461 -9.35776 -9.13166 -8.86865 -8.49548 -8.13700 -6.54576 -5.79546 -3.35276 0.75635 1.08202 2.75999 3.26616 3.33863 3.43439 3.45183 3.54478 4.27329 4.43867 4.47691 4.50692 4.70242 4.76403 4.94456 5.11019 5.16704 5.19377 5.23299 5.32937 5.34407 5.39991 5.50011 5.51957 5.54367 5.57025 5.63162 5.84816 5.92792 5.95922 6.01619 6.03441 6.11013 6.19535 6.26218 6.36764 6.44668 6.47074 6.52224 6.61248 6.75736 6.82297 6.92592 7.11339 7.25354 7.26297 7.60990 7.75678 7.79627 7.83256 8.36388 8.44001 8.52493 9.19960 9.82556 10.43128 11.21719 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.003103 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.076718 B = 9020.786636 C = 9888.317448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C 0.094 3.906 4 N -0.447 5.447 5 C 0.098 3.902 6 C 0.572 3.428 7 O -0.530 6.530 8 N -0.590 5.590 9 C 0.114 3.886 10 C -0.128 4.128 11 C -0.121 4.121 12 C 0.177 3.823 13 H 0.057 0.943 14 N -0.570 5.570 15 C -0.256 4.256 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.888 5.888 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.151 3.849 24 C 0.055 3.945 25 O -0.567 6.567 26 C 0.105 3.895 27 C -0.097 4.097 28 C -0.115 4.115 29 C -0.081 4.081 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.255 0.745 41 H 0.029 0.971 42 H 0.109 0.891 43 H 0.022 0.978 44 H 0.040 0.960 45 H 0.355 0.645 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.362 -0.818 -2.415 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.131 4.131 3 C -0.066 4.066 4 N -0.156 5.156 5 C -0.042 4.042 6 C 0.357 3.643 7 O -0.406 6.406 8 N -0.322 5.322 9 C -0.009 4.009 10 C -0.167 4.167 11 C -0.160 4.160 12 C 0.069 3.931 13 H 0.076 0.924 14 N -0.289 5.289 15 C -0.386 4.386 16 H 0.080 0.920 17 C -0.190 4.190 18 N -0.530 5.530 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.024 3.976 24 C -0.025 4.025 25 O -0.370 6.370 26 C -0.018 4.018 27 C -0.100 4.100 28 C -0.172 4.172 29 C -0.106 4.106 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.126 0.874 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.199 0.801 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.091 0.909 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.441 -0.734 -1.399 19.506 hybrid contribution 0.356 -0.596 -1.010 1.225 sum -19.086 -1.330 -2.409 19.283 Atomic orbital electron populations 1.20732 0.89992 1.03230 1.02700 1.21081 0.97661 0.94104 1.00254 1.22712 0.89365 0.97612 0.96865 1.67692 1.08231 1.29692 1.10006 1.21083 0.94798 0.89130 0.99144 1.17873 0.85252 0.77296 0.83883 1.90807 1.67773 1.49680 1.32317 1.48234 1.09325 1.66964 1.07663 1.21660 0.95615 0.98308 0.85362 1.21880 0.98454 0.96278 1.00095 1.21895 0.92039 1.02075 1.00010 1.20548 0.85742 0.93257 0.93554 0.92441 1.43699 1.00257 1.29054 1.55877 1.19052 0.98701 1.20325 1.00481 0.91993 1.25201 1.00304 0.98442 0.95102 1.69984 1.20252 1.49193 1.13587 0.86351 0.81293 0.78518 0.81357 1.20157 1.21555 1.21682 1.21062 1.01188 0.83915 0.91408 1.23187 0.81556 0.97441 1.00284 1.86615 1.28586 1.46509 1.75251 1.22474 0.75182 1.00549 1.03556 1.20837 0.94512 0.95848 0.98800 1.20806 0.99681 0.93358 1.03389 1.21311 0.92769 0.98437 0.98130 0.90711 0.91270 0.91006 0.82357 0.91566 0.91338 0.91818 0.91626 0.91596 0.92363 0.93509 0.95294 0.87380 0.95993 0.94183 0.80149 0.90659 0.89538 0.90063 0.90844 0.90893 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.03 36.01 0.36 -0.25 16 2 C -0.13 -1.19 5.91 -104.36 -0.62 -1.81 16 3 C 0.09 1.05 10.86 -17.56 -0.19 0.86 16 4 N -0.45 -6.79 10.02 -9.80 -0.10 -6.89 16 5 C 0.10 1.56 4.59 -83.01 -0.38 1.18 16 6 C 0.57 11.04 5.74 -12.19 -0.07 10.97 16 7 O -0.53 -12.17 16.54 5.35 0.09 -12.08 16 8 N -0.59 -10.94 2.97 -173.76 -0.52 -11.46 16 9 C 0.11 1.73 6.35 -3.71 -0.02 1.71 16 10 C -0.13 -1.97 6.08 -26.61 -0.16 -2.13 16 11 C -0.12 -2.25 5.11 -26.69 -0.14 -2.39 16 12 C 0.18 3.85 2.16 -67.81 -0.15 3.70 16 13 H 0.06 1.34 7.63 -51.93 -0.40 0.94 16 14 N -0.57 -13.81 2.36 -165.53 -0.39 -14.20 16 15 C -0.26 -6.63 8.13 -15.06 -0.12 -6.75 16 16 H 0.06 1.61 6.87 -52.48 -0.36 1.25 16 17 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 18 N -0.89 -24.93 11.41 55.49 0.63 -24.30 16 19 Si 0.90 21.01 29.60 -169.99 -5.03 15.98 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.15 3.57 5.61 -4.04 -0.02 3.55 16 24 C 0.06 1.09 7.39 37.16 0.27 1.36 16 25 O -0.57 -10.43 12.26 -35.23 -0.43 -10.86 16 26 C 0.10 2.29 5.75 -3.71 -0.02 2.27 16 27 C -0.10 -1.25 5.93 -104.10 -0.62 -1.87 16 28 C -0.12 -1.33 9.68 36.00 0.35 -0.98 16 29 C -0.08 -0.80 9.55 -39.31 -0.38 -1.17 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.96 6.12 -51.93 -0.32 0.65 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.27 7.63 -51.93 -0.40 0.87 16 39 H 0.06 1.13 7.04 -51.93 -0.37 0.77 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 42 H 0.11 2.82 5.48 -51.93 -0.28 2.54 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.35 4.75 9.12 45.56 0.42 5.16 16 46 H 0.08 1.73 7.50 -51.93 -0.39 1.34 16 47 H 0.09 2.17 7.04 -51.93 -0.37 1.81 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 50 H 0.07 0.99 6.98 -51.93 -0.36 0.63 16 51 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 405.44 15.07 6.11 6.11 Total: -1.00 -32.49 405.44 -9.07 -41.56 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.44 Total: 7.73 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -1.99 Total: 8.41 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.37 Total: -56.85 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.34 Total: -22.94 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.49 -9.07 -41.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489161286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.572 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds