Wall clock time and date at job start Wed Apr 1 2020 04:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38601 * 120.32683 * 2 1 4 4 N 1.31494 * 120.89978 * 180.02562 * 3 2 1 5 5 C 1.32746 * 121.64539 * 0.02562 * 4 3 2 6 6 C 1.48168 * 119.72239 * 179.97438 * 5 4 3 7 7 O 1.21520 * 120.00094 * 104.10699 * 6 5 4 8 8 N 1.34770 * 119.99817 * 284.09888 * 6 5 4 9 9 C 1.46923 * 120.63092 * 355.11402 * 8 6 5 10 10 C 1.53192 * 108.77831 * 126.36867 * 9 8 6 11 11 C 1.53042 * 109.31314 * 54.63000 * 10 9 8 12 12 C 1.53043 * 109.53986 * 298.63981 * 11 10 9 13 13 H 1.08996 * 109.52122 * 301.39887 * 12 11 10 14 14 N 1.46503 * 109.49433 * 181.31594 * 12 11 10 15 15 C 1.36934 * 119.99771 * 300.15535 * 14 12 11 16 16 H 1.08005 * 119.99954 * 36.65585 * 15 14 12 17 17 C 1.38812 * 119.99907 * 216.91704 * 15 14 12 18 18 N 1.31616 * 119.99844 * 20.04335 * 17 15 14 19 19 Si 1.86802 * 119.99978 * 200.03626 * 17 15 14 20 20 H 1.48493 * 109.47333 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47192 * 120.00726 * 19 17 15 22 22 H 1.48503 * 109.47244 * 240.00434 * 19 17 15 23 23 C 1.46495 * 119.99701 * 120.16368 * 14 12 11 24 24 C 1.53004 * 109.47105 * 274.99738 * 23 14 12 25 25 O 1.42899 * 109.46972 * 65.00247 * 24 23 14 26 26 C 1.46930 * 120.63154 * 175.09107 * 8 6 5 27 27 C 1.39272 * 120.55378 * 0.24909 * 5 4 3 28 28 C 1.50693 * 120.46975 * 179.72613 * 27 5 4 29 29 C 1.38581 * 120.32155 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46957 * 89.99351 * 1 2 3 31 31 H 1.08991 * 109.47194 * 210.00419 * 1 2 3 32 32 H 1.09005 * 109.46265 * 330.00505 * 1 2 3 33 33 H 1.07994 * 119.54839 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.58845 * 246.15242 * 9 8 6 35 35 H 1.08994 * 109.58861 * 6.58063 * 9 8 6 36 36 H 1.08998 * 109.50482 * 174.58471 * 10 9 8 37 37 H 1.09005 * 109.49414 * 294.65134 * 10 9 8 38 38 H 1.09002 * 109.46157 * 178.61226 * 11 10 9 39 39 H 1.08998 * 109.45653 * 58.66002 * 11 10 9 40 40 H 0.97006 * 119.99917 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.47767 * 34.99897 * 23 14 12 42 42 H 1.09002 * 109.46845 * 154.99714 * 23 14 12 43 43 H 1.08999 * 109.46900 * 185.00179 * 24 23 14 44 44 H 1.08996 * 109.46783 * 304.99949 * 24 23 14 45 45 H 0.96698 * 113.99497 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.58856 * 113.84437 * 26 8 6 47 47 H 1.08998 * 109.70228 * 353.48484 * 26 8 6 48 48 H 1.08999 * 109.47469 * 92.95595 * 28 27 5 49 49 H 1.09004 * 109.46998 * 212.95631 * 28 27 5 50 50 H 1.09003 * 109.47093 * 332.95137 * 28 27 5 51 51 H 1.08003 * 120.75796 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1963 0.0000 4 7 3.5218 1.2095 -0.0005 5 6 4.2295 0.0864 -0.0015 6 6 5.7098 0.1510 -0.0026 7 8 6.3288 -0.0793 1.0174 8 7 6.3697 0.4648 -1.1350 9 6 5.6438 0.6409 -2.4002 10 6 6.0056 2.0075 -2.9903 11 6 7.5268 2.1170 -3.1179 12 6 8.1661 2.0047 -1.7319 13 1 7.7784 2.7933 -1.0870 14 7 9.6198 2.1411 -1.8516 15 6 10.3297 1.2563 -2.6186 16 1 9.9067 0.8778 -3.5375 17 6 11.5905 0.8416 -2.2123 18 7 11.9481 0.9613 -0.9513 19 14 12.7798 0.1134 -3.4553 20 1 12.1413 0.0889 -4.7957 21 1 14.0100 0.9435 -3.5085 22 1 13.1337 -1.2707 -3.0498 23 6 10.3140 3.2241 -1.1506 24 6 10.2719 4.4934 -2.0039 25 8 8.9190 4.9343 -2.1353 26 6 7.8287 0.6380 -1.1277 27 6 3.5923 -1.1520 -0.0073 28 6 4.3976 -2.4256 -0.0147 29 6 2.2067 -1.1962 -0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3632 0.8901 0.5138 33 1 1.6649 2.1304 0.0004 34 1 5.9300 -0.1458 -3.0982 35 1 4.5706 0.5954 -2.2151 36 1 5.5496 2.1110 -3.9749 37 1 5.6374 2.7961 -2.3341 38 1 7.7857 3.0789 -3.5605 39 1 7.8965 1.3133 -3.7546 40 1 12.8291 0.6712 -0.6673 41 1 9.8234 3.4119 -0.1956 42 1 11.3512 2.9377 -0.9761 43 1 10.8633 5.2733 -1.5243 44 1 10.6825 4.2812 -2.9910 45 1 8.8166 5.7364 -2.6656 46 1 8.2931 -0.1490 -1.7220 47 1 8.1994 0.5897 -0.1038 48 1 4.5480 -2.7664 1.0097 49 1 3.8623 -3.1907 -0.5772 50 1 5.3649 -2.2412 -0.4820 51 1 1.6844 -2.1416 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489161286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:56 Heat of formation + Delta-G solvation = -54.659549 kcal Electronic energy + Delta-G solvation = -32100.965646 eV Core-core repulsion = 27999.748650 eV Total energy + Delta-G solvation = -4101.216996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -42.01075 -40.52308 -39.01898 -37.73882 -36.34367 -34.71993 -34.69769 -33.77387 -32.90472 -31.39833 -29.31539 -28.60374 -28.44901 -26.35028 -26.06430 -24.45967 -23.78073 -22.76437 -22.19936 -21.53958 -20.41409 -18.75450 -18.40670 -18.04757 -17.95615 -17.51234 -16.78568 -16.33148 -15.92320 -15.76427 -15.54162 -15.38766 -15.28008 -15.13581 -15.04900 -14.68752 -14.25658 -14.14366 -14.11634 -14.05915 -13.84939 -13.54687 -13.43781 -13.34228 -13.21626 -13.10944 -12.87291 -12.80065 -12.54038 -12.36383 -12.27259 -12.08073 -11.89717 -11.69217 -11.60650 -11.30231 -11.23155 -10.69947 -10.59863 -10.53434 -10.45150 -9.79776 -9.72186 -8.53847 -7.81986 -5.42166 -0.17329 0.23981 1.32922 1.46002 1.49329 1.59170 1.85543 2.52065 2.61214 3.13661 3.25949 3.54075 3.56729 3.72275 3.76237 3.90280 3.98359 4.01756 4.08466 4.10146 4.22001 4.31168 4.39882 4.46483 4.51993 4.53685 4.60963 4.61034 4.61439 4.69215 4.83835 4.85823 4.90171 4.90938 4.94380 5.03926 5.09393 5.12633 5.19889 5.23570 5.27519 5.28359 5.43487 5.51593 5.59214 5.65492 5.68389 5.75984 6.30841 6.47867 6.80822 6.96439 7.09775 7.17736 7.84954 8.42949 9.17096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.003103 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.076718 B = 9020.786636 C = 9888.317448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C 0.085 3.915 4 N -0.481 5.481 5 C 0.063 3.937 6 C 0.569 3.431 7 O -0.585 6.585 8 N -0.590 5.590 9 C 0.114 3.886 10 C -0.117 4.117 11 C -0.107 4.107 12 C 0.183 3.817 13 H 0.036 0.964 14 N -0.582 5.582 15 C -0.252 4.252 16 H 0.065 0.935 17 C -0.041 4.041 18 N -0.924 5.924 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.297 1.297 23 C 0.148 3.852 24 C 0.073 3.927 25 O -0.578 6.578 26 C 0.122 3.878 27 C -0.101 4.101 28 C -0.113 4.113 29 C -0.075 4.075 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.186 0.814 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.251 0.749 41 H 0.007 0.993 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.381 0.619 46 H 0.059 0.941 47 H 0.039 0.961 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.042 0.958 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.432 -0.925 -4.828 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.111 4.111 3 C -0.075 4.075 4 N -0.190 5.190 5 C -0.074 4.074 6 C 0.356 3.644 7 O -0.464 6.464 8 N -0.321 5.321 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.146 4.146 12 C 0.075 3.925 13 H 0.054 0.946 14 N -0.302 5.302 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.237 4.237 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.216 1.216 22 H -0.224 1.224 23 C 0.022 3.978 24 C -0.006 4.006 25 O -0.384 6.384 26 C -0.002 4.002 27 C -0.104 4.104 28 C -0.170 4.170 29 C -0.101 4.101 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.203 0.797 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.229 0.771 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.128 0.872 50 H 0.061 0.939 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -23.554 -0.812 -3.867 23.883 hybrid contribution 1.427 -0.525 -0.187 1.532 sum -22.127 -1.338 -4.054 22.535 Atomic orbital electron populations 1.20852 0.86716 1.04696 1.04166 1.21532 0.99751 0.92982 0.96823 1.23263 0.88110 0.99805 0.96292 1.67549 1.10292 1.29851 1.11355 1.20521 0.92297 0.90926 1.03660 1.18585 0.87236 0.75663 0.82918 1.90752 1.69562 1.51959 1.34173 1.48267 1.07925 1.66640 1.09260 1.21887 0.96311 0.98805 0.83785 1.21817 0.95825 0.95898 1.02011 1.21708 0.94224 1.01655 0.97043 1.20564 0.84721 0.91982 0.95256 0.94595 1.43907 1.01204 1.29352 1.55787 1.19254 0.98801 1.19793 1.00371 0.91787 1.25903 1.01918 0.99467 0.96460 1.70141 1.20330 1.50960 1.15410 0.85352 0.79130 0.77109 0.79703 1.18792 1.21579 1.22407 1.20951 0.99359 0.85977 0.91553 1.22738 0.82628 0.96096 0.99180 1.86544 1.27489 1.48274 1.76086 1.21982 0.77708 1.00300 1.00249 1.20988 0.96084 0.94704 0.98645 1.20818 0.98667 0.94145 1.03411 1.21732 0.91251 1.00443 0.96641 0.88961 0.89679 0.89789 0.79721 0.90053 0.89435 0.87901 0.92461 0.91745 0.92915 0.94006 0.97409 0.89934 0.93533 0.94550 0.77106 0.92267 0.94244 0.90513 0.87208 0.93908 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.03 71.24 0.71 0.08 16 2 C -0.11 -1.58 5.91 -19.69 -0.12 -1.69 16 3 C 0.09 1.69 10.86 84.83 0.92 2.61 16 4 N -0.48 -14.30 10.02 -184.91 -1.85 -16.15 16 5 C 0.06 2.04 4.59 41.89 0.19 2.23 16 6 C 0.57 23.38 5.74 86.88 0.50 23.88 16 7 O -0.58 -29.41 16.54 -3.78 -0.06 -29.47 16 8 N -0.59 -23.05 2.97 -821.96 -2.44 -25.50 16 9 C 0.11 3.37 6.35 86.36 0.55 3.92 16 10 C -0.12 -3.40 6.08 30.67 0.19 -3.21 16 11 C -0.11 -3.95 5.11 30.62 0.16 -3.80 16 12 C 0.18 8.30 2.16 45.07 0.10 8.40 16 13 H 0.04 1.77 7.63 -2.39 -0.02 1.75 16 14 N -0.58 -29.54 2.36 -677.60 -1.60 -31.14 16 15 C -0.25 -13.45 8.13 84.03 0.68 -12.76 16 16 H 0.06 3.36 6.87 -2.91 -0.02 3.34 16 17 C -0.04 -2.24 4.95 84.86 0.42 -1.82 16 18 N -0.92 -54.58 11.41 21.65 0.25 -54.33 16 19 Si 0.96 44.18 29.60 68.60 2.03 46.21 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 C 0.15 7.37 5.61 86.38 0.48 7.85 16 24 C 0.07 2.90 7.39 71.98 0.53 3.43 16 25 O -0.58 -20.80 12.26 -148.98 -1.83 -22.62 16 26 C 0.12 5.74 5.75 86.36 0.50 6.23 16 27 C -0.10 -2.48 5.93 -19.52 -0.12 -2.60 16 28 C -0.11 -2.57 9.68 71.23 0.69 -1.88 16 29 C -0.08 -1.21 9.55 22.45 0.21 -0.99 16 30 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 0.31 8.09 -2.39 -0.02 0.29 16 32 H 0.08 0.36 8.09 -2.38 -0.02 0.34 16 33 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 2.33 6.12 -2.39 -0.01 2.32 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.06 2.41 7.63 -2.39 -0.02 2.39 16 39 H 0.05 2.01 7.04 -2.39 -0.02 1.99 16 40 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 41 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 42 H 0.08 4.56 5.48 -2.39 -0.01 4.55 16 43 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.38 9.40 9.12 -74.06 -0.68 8.73 16 46 H 0.06 2.92 7.50 -2.39 -0.02 2.90 16 47 H 0.04 2.19 7.04 -2.39 -0.02 2.18 16 48 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.11 1.60 8.12 -2.39 -0.02 1.59 16 50 H 0.04 1.22 6.98 -2.39 -0.02 1.20 16 51 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -78.29 405.44 1.36 -76.93 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.26 Total: 26.18 kcal Atomic # 6 Polarization: 23.29 SS G_CDS: 6.60 Total: 29.89 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.65 Total: -127.12 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -1.89 Total: -52.10 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -78.29 1.36 -76.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489161286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.269 kcal (2) G-P(sol) polarization free energy of solvation -78.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds