Wall clock time and date at job start Wed Apr 1 2020 07:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38041 * 126.29716 * 2 1 4 4 C 1.47434 * 126.40812 * 359.97438 * 3 2 1 5 5 O 1.21598 * 120.00209 * 333.09191 * 4 3 2 6 6 N 1.34779 * 119.99818 * 153.09451 * 4 3 2 7 7 C 1.46499 * 119.99982 * 5.31157 * 6 4 3 8 8 C 1.50702 * 109.47407 * 96.83272 * 7 6 4 9 9 H 1.08002 * 119.99578 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00435 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00148 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00278 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46751 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46969 * 119.99913 * 12 10 8 15 15 H 1.48491 * 109.47322 * 240.00254 * 12 10 8 16 16 C 1.46493 * 120.00126 * 185.31046 * 6 4 3 17 17 C 1.53008 * 109.47057 * 94.53111 * 16 6 4 18 18 C 1.53003 * 117.49460 * 240.35650 * 17 16 6 19 19 C 1.52996 * 117.49688 * 171.70007 * 17 16 6 20 20 C 1.41286 * 107.17464 * 179.84704 * 3 2 1 21 21 N 1.30448 * 108.02133 * 0.41677 * 20 3 2 22 22 N 1.34263 * 126.28896 * 180.31006 * 2 1 3 23 23 C 1.46501 * 125.75656 * 359.97438 * 22 2 1 24 24 C 1.53180 * 109.54768 * 239.82669 * 23 22 2 25 25 C 1.53098 * 109.15406 * 183.23938 * 24 23 22 26 26 O 1.42907 * 109.48813 * 57.48054 * 25 24 23 27 27 C 1.42901 * 114.09231 * 298.88259 * 26 25 24 28 28 C 1.53089 * 109.41705 * 61.16238 * 27 26 25 29 29 H 1.08999 * 109.47035 * 269.69100 * 1 2 3 30 30 H 1.09000 * 109.46935 * 29.68853 * 1 2 3 31 31 H 1.09003 * 109.46996 * 149.68757 * 1 2 3 32 32 H 1.08998 * 109.47610 * 216.83537 * 7 6 4 33 33 H 1.09005 * 109.47264 * 336.83583 * 7 6 4 34 34 H 0.97002 * 120.00499 * 179.97438 * 11 10 8 35 35 H 1.09004 * 109.47207 * 214.52963 * 16 6 4 36 36 H 1.09001 * 109.47270 * 334.53166 * 16 6 4 37 37 H 1.08996 * 115.54564 * 26.02301 * 17 16 6 38 38 H 1.08995 * 117.50242 * 0.02562 * 18 17 16 39 39 H 1.09006 * 117.49486 * 145.01809 * 18 17 16 40 40 H 1.09003 * 117.49542 * 214.97783 * 19 17 16 41 41 H 1.08999 * 117.50259 * 359.97438 * 19 17 16 42 42 H 1.08002 * 125.98850 * 180.15667 * 20 3 2 43 43 H 1.09004 * 109.53939 * 0.02562 * 23 22 2 44 44 H 1.08998 * 109.52099 * 303.06082 * 24 23 22 45 45 H 1.09003 * 109.52109 * 63.24487 * 24 23 22 46 46 H 1.08998 * 109.40987 * 297.49543 * 25 24 23 47 47 H 1.09007 * 109.47875 * 177.50197 * 25 24 23 48 48 H 1.09003 * 109.48760 * 301.17525 * 27 26 25 49 49 H 1.09008 * 109.48012 * 181.14183 * 27 26 25 50 50 H 1.09001 * 109.52139 * 182.48727 * 28 27 26 51 51 H 1.08998 * 109.57944 * 62.32377 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.8087 2.8215 -0.4776 6 7 2.6792 3.4732 0.5277 7 6 4.0240 3.1298 0.9964 8 6 5.0287 3.4523 -0.0796 9 1 4.6984 3.8715 -1.0186 10 6 6.3694 3.2131 0.1349 11 7 6.7716 2.7031 1.2785 12 14 7.6148 3.6135 -1.1986 13 1 6.9115 4.1738 -2.3805 14 1 8.5880 4.6100 -0.6839 15 1 8.3346 2.3755 -1.5914 16 6 2.1967 4.8524 0.6331 17 6 1.5996 5.0789 2.0236 18 6 0.1250 5.4794 2.1024 19 6 1.2157 6.5106 2.4028 20 6 3.6591 0.6497 0.0036 21 7 3.6340 -0.6545 -0.0034 22 7 2.3016 -1.0822 -0.0059 23 6 1.8500 -2.4759 -0.0129 24 6 2.3827 -3.1935 1.2312 25 6 1.9740 -4.6678 1.1742 26 8 2.4744 -5.2552 -0.0286 27 6 1.9716 -4.6548 -1.2240 28 6 2.3820 -3.1806 -1.2646 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3633 0.8928 -0.5090 31 1 -0.3633 -0.8872 -0.5187 32 1 4.2544 3.7055 1.8929 33 1 4.0677 2.0654 1.2270 34 1 7.7149 2.5345 1.4293 35 1 3.0274 5.5408 0.4779 36 1 1.4323 5.0288 -0.1236 37 1 1.9897 4.4365 2.8130 38 1 -0.4198 5.5810 1.1639 39 1 -0.4550 5.1006 2.9441 40 1 1.3528 6.8099 3.4419 41 1 1.3888 7.2911 1.6619 42 1 4.5450 1.2675 0.0069 43 1 0.7604 -2.5060 -0.0131 44 1 3.4698 -3.1188 1.2573 45 1 1.9635 -2.7321 2.1253 46 1 0.8867 -4.7432 1.1906 47 1 2.3880 -5.1933 2.0349 48 1 0.8842 -4.7300 -1.2390 49 1 2.3838 -5.1709 -2.0911 50 1 1.9622 -2.7100 -2.1537 51 1 3.4690 -3.1046 -1.2911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161998254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:09:57 Heat of formation + Delta-G solvation = 24.112750 kcal Electronic energy + Delta-G solvation = -31785.981299 eV Core-core repulsion = 27688.180126 eV Total energy + Delta-G solvation = -4097.801173 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.14921 -39.42658 -38.59553 -36.77890 -34.98966 -34.45398 -32.50561 -31.98652 -31.42082 -30.25942 -27.93136 -27.26031 -25.81055 -24.82526 -23.84845 -23.05379 -22.08264 -21.62861 -21.23926 -19.96740 -19.42804 -18.12263 -17.02205 -16.54559 -16.32104 -15.97507 -15.74261 -15.65820 -15.08653 -15.02080 -14.53942 -14.41220 -14.31630 -13.77047 -13.75353 -13.57836 -13.23752 -12.90385 -12.73973 -12.67889 -12.45049 -12.28700 -12.09750 -11.82385 -11.58385 -11.56834 -11.30374 -11.23113 -11.14602 -11.03184 -10.87880 -10.72190 -10.44684 -10.28295 -10.11341 -10.04769 -9.95313 -9.67655 -9.51481 -8.98560 -8.84161 -8.51819 -8.02325 -7.59945 -6.19849 -4.28519 2.02174 2.66622 2.97652 3.23404 3.32578 3.36758 3.59554 3.90749 4.14063 4.20921 4.30085 4.38513 4.44837 4.66584 4.66632 4.82790 4.90685 5.03792 5.11559 5.12679 5.15553 5.25256 5.27427 5.30587 5.35214 5.38700 5.53453 5.56059 5.65268 5.72417 5.83667 5.87469 5.90842 5.93628 5.99107 6.16525 6.17252 6.20545 6.25577 6.31620 6.38529 6.55038 6.67524 6.86707 6.88707 7.25668 7.29728 7.33398 7.62939 7.76398 8.04748 8.21297 8.44943 8.81817 9.15146 9.40041 10.84955 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.003758 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.597773 B = 7448.777235 C = 9733.818174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.130 3.870 3 C -0.279 4.279 4 C 0.596 3.404 5 O -0.580 6.580 6 N -0.588 5.588 7 C 0.219 3.781 8 C -0.541 4.541 9 H 0.064 0.936 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.894 3.106 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.151 3.849 17 C -0.157 4.157 18 C -0.178 4.178 19 C -0.180 4.180 20 C 0.094 3.906 21 N -0.309 5.309 22 N -0.369 5.369 23 C 0.165 3.835 24 C -0.165 4.165 25 C 0.066 3.934 26 O -0.380 6.380 27 C 0.066 3.934 28 C -0.165 4.165 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.232 0.768 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.100 0.900 48 H 0.052 0.948 49 H 0.100 0.900 50 H 0.079 0.921 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 -9.267 0.652 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.001 4.001 3 C -0.294 4.294 4 C 0.386 3.614 5 O -0.463 6.463 6 N -0.316 5.316 7 C 0.099 3.901 8 C -0.579 4.579 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.523 5.523 12 Si 0.721 3.279 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.027 3.973 17 C -0.176 4.176 18 C -0.215 4.215 19 C -0.218 4.218 20 C -0.092 4.092 21 N -0.128 5.128 22 N -0.149 5.149 23 C 0.062 3.938 24 C -0.203 4.203 25 C -0.011 4.011 26 O -0.299 6.299 27 C -0.011 4.011 28 C -0.203 4.203 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.248 0.752 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.070 0.930 49 H 0.118 0.882 50 H 0.097 0.903 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.803 -10.526 0.512 15.823 hybrid contribution 0.356 1.311 -0.475 1.439 sum -11.447 -9.215 0.037 14.695 Atomic orbital electron populations 1.20603 0.87207 1.04489 1.03198 1.21294 0.94189 0.86747 0.97871 1.20045 0.93237 0.93403 1.22677 1.17216 0.83188 0.84062 0.76940 1.90593 1.23857 1.82950 1.48856 1.47881 1.16849 1.07149 1.59731 1.19963 0.76394 0.98408 0.95378 1.21561 0.91318 1.43438 1.01604 0.91760 1.24960 0.98320 0.94724 0.95707 1.69934 1.16448 1.42836 1.23065 0.86494 0.81190 0.78306 0.81926 1.19560 1.20820 1.20679 1.20818 0.98934 0.83894 0.93605 1.22803 0.97242 0.97564 1.00041 1.22977 0.91932 1.03808 1.02791 1.22910 1.04304 0.92741 1.01844 1.25678 0.99330 0.91130 0.93064 1.77241 0.94816 1.14062 1.26668 1.48531 1.04763 1.04635 1.56929 1.21201 0.98625 0.77468 0.96479 1.22574 1.04421 0.95859 0.97441 1.22577 0.98234 0.92283 0.88042 1.87966 1.70174 1.58033 1.13688 1.22574 0.98216 0.92096 0.88244 1.22578 1.04386 0.95961 0.97415 0.90546 0.87516 0.91855 0.94936 0.92489 0.92368 0.90091 0.90532 0.87891 0.88814 0.89620 0.89246 0.88919 0.75213 0.88499 0.89018 0.90239 0.92979 0.88155 0.92957 0.88186 0.90267 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.69 36.01 0.35 -0.95 16 2 C 0.13 2.26 7.00 -81.60 -0.57 1.69 16 3 C -0.28 -5.79 5.72 -105.07 -0.60 -6.39 16 4 C 0.60 13.01 7.56 -12.51 -0.09 12.91 16 5 O -0.58 -13.01 14.65 5.28 0.08 -12.93 16 6 N -0.59 -12.63 2.46 -176.32 -0.43 -13.07 16 7 C 0.22 5.17 4.71 -5.19 -0.02 5.14 16 8 C -0.54 -13.72 7.82 -34.44 -0.27 -13.99 16 9 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.07 1.72 5.24 -17.82 -0.09 1.63 16 11 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 12 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.15 2.86 5.79 -4.04 -0.02 2.83 16 17 C -0.16 -2.59 6.01 -90.62 -0.54 -3.14 16 18 C -0.18 -2.54 10.18 -26.69 -0.27 -2.81 16 19 C -0.18 -2.44 10.25 -26.70 -0.27 -2.72 16 20 C 0.09 2.05 9.62 -16.98 -0.16 1.89 16 21 N -0.31 -6.22 12.33 30.86 0.38 -5.84 16 22 N -0.37 -6.08 3.26 -49.98 -0.16 -6.25 16 23 C 0.16 1.99 2.98 -67.74 -0.20 1.79 16 24 C -0.16 -1.86 5.68 -26.59 -0.15 -2.01 16 25 C 0.07 0.59 6.84 37.21 0.25 0.85 16 26 O -0.38 -4.13 10.77 -35.23 -0.38 -4.51 16 27 C 0.07 0.59 6.84 37.20 0.25 0.85 16 28 C -0.17 -1.86 5.68 -26.59 -0.15 -2.01 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 1.64 6.40 -51.93 -0.33 1.31 16 31 H 0.06 0.66 7.07 -51.93 -0.37 0.29 16 32 H 0.03 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.06 1.41 4.12 -51.93 -0.21 1.19 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 36 H 0.08 1.45 6.96 -51.93 -0.36 1.09 16 37 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.23 5.60 4.24 -52.49 -0.22 5.37 16 43 H 0.10 0.94 6.64 -51.93 -0.34 0.59 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 48 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 406.86 15.07 6.13 6.13 Total: -1.00 -29.77 406.86 -9.39 -39.16 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.14 Total: 9.41 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.58 Total: -4.45 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.52 Total: -48.16 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.30 Total: -17.44 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.77 -9.39 -39.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161998254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.270 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds