Wall clock time and date at job start Wed Apr 1 2020 07:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38041 * 126.29716 * 2 1 4 4 C 1.47434 * 126.40812 * 359.97438 * 3 2 1 5 5 O 1.21598 * 120.00209 * 333.09191 * 4 3 2 6 6 N 1.34779 * 119.99818 * 153.09451 * 4 3 2 7 7 C 1.46499 * 119.99982 * 5.31157 * 6 4 3 8 8 C 1.50702 * 109.47407 * 96.83272 * 7 6 4 9 9 H 1.08002 * 119.99578 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00435 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00148 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00278 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46751 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46969 * 119.99913 * 12 10 8 15 15 H 1.48491 * 109.47322 * 240.00254 * 12 10 8 16 16 C 1.46493 * 120.00126 * 185.31046 * 6 4 3 17 17 C 1.53008 * 109.47057 * 94.53111 * 16 6 4 18 18 C 1.53003 * 117.49460 * 240.35650 * 17 16 6 19 19 C 1.52996 * 117.49688 * 171.70007 * 17 16 6 20 20 C 1.41286 * 107.17464 * 179.84704 * 3 2 1 21 21 N 1.30448 * 108.02133 * 0.41677 * 20 3 2 22 22 N 1.34263 * 126.28896 * 180.31006 * 2 1 3 23 23 C 1.46501 * 125.75656 * 359.97438 * 22 2 1 24 24 C 1.53180 * 109.54768 * 239.82669 * 23 22 2 25 25 C 1.53098 * 109.15406 * 183.23938 * 24 23 22 26 26 O 1.42907 * 109.48813 * 57.48054 * 25 24 23 27 27 C 1.42901 * 114.09231 * 298.88259 * 26 25 24 28 28 C 1.53089 * 109.41705 * 61.16238 * 27 26 25 29 29 H 1.08999 * 109.47035 * 269.69100 * 1 2 3 30 30 H 1.09000 * 109.46935 * 29.68853 * 1 2 3 31 31 H 1.09003 * 109.46996 * 149.68757 * 1 2 3 32 32 H 1.08998 * 109.47610 * 216.83537 * 7 6 4 33 33 H 1.09005 * 109.47264 * 336.83583 * 7 6 4 34 34 H 0.97002 * 120.00499 * 179.97438 * 11 10 8 35 35 H 1.09004 * 109.47207 * 214.52963 * 16 6 4 36 36 H 1.09001 * 109.47270 * 334.53166 * 16 6 4 37 37 H 1.08996 * 115.54564 * 26.02301 * 17 16 6 38 38 H 1.08995 * 117.50242 * 0.02562 * 18 17 16 39 39 H 1.09006 * 117.49486 * 145.01809 * 18 17 16 40 40 H 1.09003 * 117.49542 * 214.97783 * 19 17 16 41 41 H 1.08999 * 117.50259 * 359.97438 * 19 17 16 42 42 H 1.08002 * 125.98850 * 180.15667 * 20 3 2 43 43 H 1.09004 * 109.53939 * 0.02562 * 23 22 2 44 44 H 1.08998 * 109.52099 * 303.06082 * 24 23 22 45 45 H 1.09003 * 109.52109 * 63.24487 * 24 23 22 46 46 H 1.08998 * 109.40987 * 297.49543 * 25 24 23 47 47 H 1.09007 * 109.47875 * 177.50197 * 25 24 23 48 48 H 1.09003 * 109.48760 * 301.17525 * 27 26 25 49 49 H 1.09008 * 109.48012 * 181.14183 * 27 26 25 50 50 H 1.09001 * 109.52139 * 182.48727 * 28 27 26 51 51 H 1.08998 * 109.57944 * 62.32377 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.8087 2.8215 -0.4776 6 7 2.6792 3.4732 0.5277 7 6 4.0240 3.1298 0.9964 8 6 5.0287 3.4523 -0.0796 9 1 4.6984 3.8715 -1.0186 10 6 6.3694 3.2131 0.1349 11 7 6.7716 2.7031 1.2785 12 14 7.6148 3.6135 -1.1986 13 1 6.9115 4.1738 -2.3805 14 1 8.5880 4.6100 -0.6839 15 1 8.3346 2.3755 -1.5914 16 6 2.1967 4.8524 0.6331 17 6 1.5996 5.0789 2.0236 18 6 0.1250 5.4794 2.1024 19 6 1.2157 6.5106 2.4028 20 6 3.6591 0.6497 0.0036 21 7 3.6340 -0.6545 -0.0034 22 7 2.3016 -1.0822 -0.0059 23 6 1.8500 -2.4759 -0.0129 24 6 2.3827 -3.1935 1.2312 25 6 1.9740 -4.6678 1.1742 26 8 2.4744 -5.2552 -0.0286 27 6 1.9716 -4.6548 -1.2240 28 6 2.3820 -3.1806 -1.2646 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3633 0.8928 -0.5090 31 1 -0.3633 -0.8872 -0.5187 32 1 4.2544 3.7055 1.8929 33 1 4.0677 2.0654 1.2270 34 1 7.7149 2.5345 1.4293 35 1 3.0274 5.5408 0.4779 36 1 1.4323 5.0288 -0.1236 37 1 1.9897 4.4365 2.8130 38 1 -0.4198 5.5810 1.1639 39 1 -0.4550 5.1006 2.9441 40 1 1.3528 6.8099 3.4419 41 1 1.3888 7.2911 1.6619 42 1 4.5450 1.2675 0.0069 43 1 0.7604 -2.5060 -0.0131 44 1 3.4698 -3.1188 1.2573 45 1 1.9635 -2.7321 2.1253 46 1 0.8867 -4.7432 1.1906 47 1 2.3880 -5.1933 2.0349 48 1 0.8842 -4.7300 -1.2390 49 1 2.3838 -5.1709 -2.0911 50 1 1.9622 -2.7100 -2.1537 51 1 3.4690 -3.1046 -1.2911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161998254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:09:56 Heat of formation + Delta-G solvation = 7.513567 kcal Electronic energy + Delta-G solvation = -31786.701094 eV Core-core repulsion = 27688.180126 eV Total energy + Delta-G solvation = -4098.520967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.57246 -40.55864 -39.93190 -38.12223 -36.61893 -35.62684 -34.43628 -33.30101 -32.20137 -31.58793 -29.63218 -28.78053 -27.26934 -25.86163 -24.97860 -24.65121 -23.23733 -23.03303 -22.43913 -21.29977 -20.62442 -19.71559 -18.57241 -18.25528 -17.30335 -17.19202 -17.06839 -16.90455 -16.42477 -16.21052 -15.96849 -15.77620 -15.69531 -15.18598 -14.86058 -14.78022 -14.54920 -14.34515 -14.22903 -13.94979 -13.69984 -13.51952 -13.39687 -13.28392 -12.97545 -12.83456 -12.57548 -12.52468 -12.41896 -12.33524 -12.31287 -12.12266 -11.92838 -11.76351 -11.70523 -11.38351 -11.27446 -10.80789 -10.76699 -10.68616 -10.53626 -10.16756 -9.59254 -9.29448 -8.20798 -6.35910 0.60501 1.30409 1.38789 1.41924 1.42612 1.52685 2.31584 2.36664 2.58707 2.90532 2.97429 3.08293 3.30495 3.56651 3.62731 3.77970 3.86433 3.88821 3.92979 4.05621 4.08641 4.14862 4.20707 4.23246 4.33931 4.47064 4.48220 4.56255 4.63882 4.66091 4.67734 4.76282 4.76764 4.80034 4.87376 4.91342 4.96732 4.99349 5.00964 5.03562 5.14456 5.19780 5.27997 5.29624 5.32246 5.62379 5.68903 5.91492 6.04863 6.05862 6.19696 6.61422 6.67740 6.85535 7.32362 7.48054 8.83282 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008919 B = 0.003758 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.597773 B = 7448.777235 C = 9733.818174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.148 3.852 3 C -0.318 4.318 4 C 0.593 3.407 5 O -0.590 6.590 6 N -0.592 5.592 7 C 0.237 3.763 8 C -0.543 4.543 9 H 0.051 0.949 10 C 0.029 3.971 11 N -0.912 5.912 12 Si 0.950 3.050 13 H -0.271 1.271 14 H -0.275 1.275 15 H -0.280 1.280 16 C 0.152 3.848 17 C -0.184 4.184 18 C -0.167 4.167 19 C -0.158 4.158 20 C 0.076 3.924 21 N -0.329 5.329 22 N -0.354 5.354 23 C 0.151 3.849 24 C -0.161 4.161 25 C 0.070 3.930 26 O -0.401 6.401 27 C 0.069 3.931 28 C -0.161 4.161 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.012 0.988 33 H 0.048 0.952 34 H 0.269 0.731 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.202 0.798 43 H 0.138 0.862 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.084 0.916 49 H 0.110 0.890 50 H 0.084 0.916 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.934 -10.563 0.530 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.014 3.986 3 C -0.332 4.332 4 C 0.383 3.617 5 O -0.474 6.474 6 N -0.321 5.321 7 C 0.116 3.884 8 C -0.582 4.582 9 H 0.070 0.930 10 C -0.172 4.172 11 N -0.551 5.551 12 Si 0.776 3.224 13 H -0.196 1.196 14 H -0.200 1.200 15 H -0.206 1.206 16 C 0.029 3.971 17 C -0.203 4.203 18 C -0.203 4.203 19 C -0.196 4.196 20 C -0.110 4.110 21 N -0.148 5.148 22 N -0.133 5.133 23 C 0.051 3.949 24 C -0.199 4.199 25 C -0.007 4.007 26 O -0.320 6.320 27 C -0.007 4.007 28 C -0.200 4.200 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.030 0.970 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.218 0.782 43 H 0.155 0.845 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.128 0.872 48 H 0.102 0.898 49 H 0.129 0.871 50 H 0.103 0.897 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.485 -11.826 0.390 18.703 hybrid contribution 1.138 1.617 -0.439 2.025 sum -13.348 -10.209 -0.049 16.804 Atomic orbital electron populations 1.20738 0.83766 1.05645 1.04907 1.21863 0.95972 0.85722 0.95028 1.20137 0.93431 0.93930 1.25710 1.17414 0.83058 0.84591 0.76613 1.90562 1.24120 1.83291 1.49450 1.47891 1.16126 1.08320 1.59735 1.19574 0.77319 0.97388 0.94086 1.21623 0.92042 1.43137 1.01376 0.93022 1.25571 0.99764 0.94527 0.97375 1.70017 1.16817 1.43728 1.24534 0.85617 0.79128 0.78080 0.79603 1.19570 1.20032 1.20572 1.20879 0.98515 0.82416 0.95294 1.22591 0.99490 1.00216 0.98038 1.23028 0.90696 1.03289 1.03330 1.23031 1.02170 0.91216 1.03151 1.25177 0.99120 0.91762 0.94914 1.77137 0.97461 1.13218 1.26995 1.48883 1.03309 1.06324 1.54809 1.21810 1.00870 0.74942 0.97304 1.22544 1.02156 0.97966 0.97257 1.22691 1.00108 0.90069 0.87864 1.87952 1.71080 1.58339 1.14660 1.22694 1.00083 0.89891 0.88072 1.22552 1.02198 0.98052 0.97181 0.88381 0.89243 0.87699 0.96954 0.93414 0.92225 0.91007 0.90777 0.89534 0.88878 0.88145 0.87465 0.87850 0.78235 0.84458 0.92598 0.89735 0.89756 0.87175 0.89751 0.87150 0.89732 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.20 9.69 71.24 0.69 -1.51 16 2 C 0.15 4.98 7.00 42.14 0.29 5.28 16 3 C -0.32 -13.57 5.72 -20.15 -0.12 -13.69 16 4 C 0.59 26.70 7.56 86.67 0.66 27.35 16 5 O -0.59 -26.79 14.65 -4.02 -0.06 -26.85 16 6 N -0.59 -26.74 2.46 -830.02 -2.04 -28.78 16 7 C 0.24 11.93 4.71 85.63 0.40 12.33 16 8 C -0.54 -28.97 7.82 25.60 0.20 -28.77 16 9 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 10 C 0.03 1.54 5.24 84.65 0.44 1.99 16 11 N -0.91 -50.84 13.29 21.44 0.28 -50.55 16 12 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 C 0.15 5.95 5.79 86.38 0.50 6.45 16 17 C -0.18 -6.13 6.01 -10.79 -0.06 -6.20 16 18 C -0.17 -4.52 10.18 30.62 0.31 -4.21 16 19 C -0.16 -4.04 10.25 30.62 0.31 -3.73 16 20 C 0.08 3.51 9.62 85.65 0.82 4.33 16 21 N -0.33 -13.75 12.33 -56.28 -0.69 -14.45 16 22 N -0.35 -11.42 3.26 -312.04 -1.02 -12.44 16 23 C 0.15 3.28 2.98 45.11 0.13 3.42 16 24 C -0.16 -3.38 5.68 30.69 0.17 -3.20 16 25 C 0.07 1.03 6.84 72.02 0.49 1.53 16 26 O -0.40 -7.69 10.77 -148.98 -1.60 -9.30 16 27 C 0.07 1.02 6.84 72.01 0.49 1.52 16 28 C -0.16 -3.36 5.68 30.69 0.17 -3.19 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.55 6.40 -2.39 -0.02 2.54 16 31 H 0.10 1.62 7.07 -2.39 -0.02 1.61 16 32 H 0.01 0.66 8.12 -2.39 -0.02 0.64 16 33 H 0.05 2.53 4.12 -2.38 -0.01 2.52 16 34 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 36 H 0.07 2.89 6.96 -2.39 -0.02 2.87 16 37 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.09 2.55 8.03 -2.39 -0.02 2.54 16 39 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.20 10.48 4.24 -2.91 -0.01 10.47 16 43 H 0.14 1.94 6.64 -2.38 -0.02 1.93 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 50 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -68.95 406.86 3.75 -65.20 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.93 Total: 32.55 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.92 Total: -0.31 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -3.47 Total: -106.22 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.66 Total: -36.15 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -68.95 3.75 -65.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161998254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.714 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds