Wall clock time and date at job start Wed Apr 1 2020 07:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38107 * 126.29961 * 2 1 4 4 C 1.47357 * 126.42188 * 359.97438 * 3 2 1 5 5 O 1.21632 * 120.00130 * 351.61876 * 4 3 2 6 6 N 1.34770 * 120.00200 * 171.60739 * 4 3 2 7 7 C 1.36984 * 119.99936 * 0.43629 * 6 4 3 8 8 H 1.07999 * 120.00333 * 113.20528 * 7 6 4 9 9 C 1.38978 * 119.99673 * 293.20578 * 7 6 4 10 10 N 1.31409 * 119.99986 * 354.43429 * 9 7 6 11 11 Si 1.86801 * 119.99740 * 174.43642 * 9 7 6 12 12 H 1.48498 * 109.47385 * 60.00254 * 11 9 7 13 13 H 1.48503 * 109.47007 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47198 * 299.99770 * 11 9 7 15 15 C 1.46501 * 120.00138 * 180.42558 * 6 4 3 16 16 C 1.54969 * 110.92228 * 121.66760 * 15 6 4 17 17 C 1.54263 * 104.16012 * 156.29489 * 16 15 6 18 18 C 1.53870 * 106.64333 * 336.44865 * 17 16 15 19 19 C 1.54265 * 106.59709 * 359.96968 * 18 17 16 20 20 C 1.41314 * 107.15661 * 180.24533 * 3 2 1 21 21 N 1.30445 * 108.03023 * 359.61394 * 20 3 2 22 22 N 1.34288 * 126.29742 * 180.02562 * 2 1 3 23 23 C 1.46501 * 125.75212 * 359.95722 * 22 2 1 24 24 C 1.53178 * 109.54464 * 239.82487 * 23 22 2 25 25 C 1.53104 * 109.15460 * 183.23982 * 24 23 22 26 26 O 1.42903 * 109.48771 * 57.47582 * 25 24 23 27 27 C 1.42900 * 114.09495 * 298.88686 * 26 25 24 28 28 C 1.53089 * 109.41846 * 61.15828 * 27 26 25 29 29 H 1.08995 * 109.46904 * 89.97620 * 1 2 3 30 30 H 1.09001 * 109.46742 * 209.97663 * 1 2 3 31 31 H 1.08996 * 109.47035 * 329.97521 * 1 2 3 32 32 H 0.97000 * 119.99534 * 179.97438 * 10 9 7 33 33 H 1.09001 * 110.67302 * 358.36257 * 15 6 4 34 34 H 1.09006 * 110.47574 * 37.64025 * 16 15 6 35 35 H 1.08997 * 110.52654 * 274.97933 * 16 15 6 36 36 H 1.09005 * 110.02940 * 217.13385 * 17 16 15 37 37 H 1.09006 * 110.02952 * 95.75979 * 17 16 15 38 38 H 1.08988 * 110.03533 * 119.25766 * 18 17 16 39 39 H 1.08997 * 110.02837 * 240.64400 * 18 17 16 40 40 H 1.09007 * 110.48390 * 142.28948 * 19 18 17 41 41 H 1.09000 * 110.49240 * 264.80058 * 19 18 17 42 42 H 1.08008 * 125.98986 * 179.73333 * 20 3 2 43 43 H 1.09005 * 109.54194 * 0.02562 * 23 22 2 44 44 H 1.09002 * 109.51790 * 303.05594 * 24 23 22 45 45 H 1.08998 * 109.51991 * 63.24724 * 24 23 22 46 46 H 1.09000 * 109.41076 * 297.49298 * 25 24 23 47 47 H 1.09005 * 109.48300 * 177.50157 * 25 24 23 48 48 H 1.08999 * 109.48549 * 301.17499 * 27 26 25 49 49 H 1.09008 * 109.47822 * 181.13797 * 27 26 25 50 50 H 1.08996 * 109.52381 * 182.48317 * 28 27 26 51 51 H 1.09007 * 109.57148 * 62.32616 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1130 0.0000 4 6 1.8870 2.5201 -0.0005 5 8 0.7113 2.7913 -0.1546 6 7 2.7893 3.5066 0.1699 7 6 4.1145 3.2016 0.3347 8 1 4.8314 3.4817 -0.4230 9 6 4.5366 2.5318 1.4769 10 7 3.6853 2.2877 2.4477 11 14 6.3140 1.9784 1.6319 12 1 7.2089 3.1611 1.5584 13 1 6.5067 1.2914 2.9343 14 1 6.6392 1.0421 0.5262 15 6 2.3528 4.9050 0.1787 16 6 2.7407 5.5975 1.5097 17 6 2.7934 7.0975 1.1534 18 6 3.0413 7.1818 -0.3628 19 6 3.1316 5.7298 -0.8760 20 6 3.6596 0.6496 -0.0058 21 7 3.6343 -0.6545 -0.0006 22 7 2.3020 -1.0823 -0.0005 23 6 1.8505 -2.4760 -0.0002 24 6 2.3836 -3.1871 1.2474 25 6 1.9750 -4.6618 1.1982 26 8 2.4750 -5.2553 -0.0018 27 6 1.9718 -4.6612 -1.2000 28 6 2.3821 -3.1871 -1.2484 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5142 32 1 3.9799 1.8199 3.2448 33 1 1.2787 4.9740 0.0068 34 1 3.7171 5.2514 1.8492 35 1 1.9834 5.4126 2.2715 36 1 3.6082 7.5808 1.6925 37 1 1.8457 7.5742 1.4039 38 1 2.2137 7.6987 -0.8483 39 1 3.9760 7.7069 -0.5596 40 1 2.6593 5.6410 -1.8544 41 1 4.1713 5.4062 -0.9246 42 1 4.5458 1.2671 -0.0113 43 1 0.7609 -2.5063 0.0000 44 1 3.4707 -3.1123 1.2727 45 1 1.9645 -2.7212 2.1392 46 1 0.8877 -4.7372 1.2153 47 1 2.3893 -5.1829 2.0614 48 1 0.8845 -4.7365 -1.2144 49 1 2.3839 -5.1817 -2.0646 50 1 1.9621 -2.7212 -2.1398 51 1 3.4692 -3.1113 -1.2756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271120477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:10:01 Heat of formation + Delta-G solvation = -4.726255 kcal Electronic energy + Delta-G solvation = -32594.980868 eV Core-core repulsion = 28495.929143 eV Total energy + Delta-G solvation = -4099.051726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.71812 -39.23045 -38.40541 -36.43307 -34.67535 -34.04116 -31.57164 -31.43284 -31.29314 -29.67978 -27.88762 -27.31340 -26.16613 -24.94338 -24.64664 -23.71166 -21.44852 -21.14248 -19.68293 -19.46602 -19.22772 -18.50725 -16.95553 -16.20799 -16.19239 -15.78841 -15.41772 -15.23677 -14.90439 -14.78862 -14.52384 -14.31784 -13.70829 -13.65294 -13.28409 -13.12581 -13.02493 -12.57511 -12.54733 -12.43863 -12.38482 -12.14227 -11.84316 -11.56315 -11.44303 -11.34010 -11.28185 -11.02280 -10.91166 -10.60444 -10.58553 -10.53010 -10.45857 -10.33404 -10.25563 -9.83843 -9.77834 -9.73275 -9.57130 -8.91199 -8.40822 -8.26176 -7.53247 -6.95336 -6.33756 -4.29520 2.47431 3.01622 3.10847 3.18490 3.21385 3.46330 3.69945 4.01650 4.46688 4.61747 4.79617 4.80807 4.85797 4.88384 5.02783 5.05232 5.11928 5.20626 5.40603 5.41448 5.45884 5.48663 5.48829 5.58773 5.61909 5.69902 5.81409 6.00264 6.03558 6.08927 6.18386 6.24058 6.25726 6.28192 6.37059 6.45763 6.49895 6.57987 6.59086 6.64336 6.74794 6.77451 6.98854 6.99257 7.08618 7.17502 7.40296 7.42105 7.67390 7.74391 8.16177 8.60742 8.66507 8.96006 9.69796 10.13178 10.66959 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.003514 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.962720 B = 7965.899303 C = 8945.636788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.109 3.891 3 C -0.218 4.218 4 C 0.590 3.410 5 O -0.614 6.614 6 N -0.440 5.440 7 C -0.358 4.358 8 H 0.079 0.921 9 C 0.064 3.936 10 N -0.834 5.834 11 Si 0.888 3.112 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.261 1.261 15 C 0.139 3.861 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.128 4.128 20 C 0.103 3.897 21 N -0.334 5.334 22 N -0.375 5.375 23 C 0.168 3.832 24 C -0.164 4.164 25 C 0.066 3.934 26 O -0.382 6.382 27 C 0.066 3.934 28 C -0.163 4.163 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.270 0.730 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.215 0.785 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.098 0.902 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.077 0.923 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -6.994 -3.357 8.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.020 4.020 3 C -0.232 4.232 4 C 0.382 3.618 5 O -0.501 6.501 6 N -0.159 5.159 7 C -0.487 4.487 8 H 0.097 0.903 9 C -0.147 4.147 10 N -0.466 5.466 11 Si 0.713 3.287 12 H -0.194 1.194 13 H -0.205 1.205 14 H -0.186 1.186 15 C 0.035 3.965 16 C -0.154 4.154 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.167 4.167 20 C -0.083 4.083 21 N -0.153 5.153 22 N -0.156 5.156 23 C 0.065 3.935 24 C -0.202 4.202 25 C -0.011 4.011 26 O -0.300 6.300 27 C -0.012 4.012 28 C -0.201 4.201 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.231 0.769 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.116 0.884 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.096 0.904 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.899 -8.269 -3.210 9.332 hybrid contribution 0.396 0.783 0.541 1.031 sum -2.503 -7.486 -2.670 8.332 Atomic orbital electron populations 1.20430 0.87690 1.03310 1.02692 1.21280 0.93989 0.86991 0.99769 1.19819 0.92353 0.93266 1.17727 1.17404 0.84476 0.84380 0.75555 1.90529 1.18293 1.84746 1.56581 1.42727 1.06465 1.01984 1.64695 1.18881 0.83964 1.41621 1.04220 0.90307 1.25770 0.98019 0.96089 0.94831 1.69864 1.34728 1.36083 1.05911 0.86751 0.83698 0.79491 0.78751 1.19382 1.20541 1.18589 1.21872 0.97702 0.83453 0.93468 1.22471 1.02923 0.92320 0.97695 1.22093 1.00232 0.97970 0.95784 1.22027 1.00337 0.97292 0.95978 1.22591 1.02040 0.93969 0.98075 1.25655 0.99983 0.90011 0.92629 1.77078 0.95494 1.14653 1.28080 1.48236 1.04676 1.04111 1.58622 1.21058 0.98433 0.78090 0.95886 1.22561 1.04145 0.95672 0.97857 1.22576 0.98208 0.92410 0.87930 1.87942 1.70234 1.58109 1.13746 1.22572 0.98186 0.92370 0.88027 1.22554 1.04116 0.95730 0.97722 0.90929 0.92861 0.88199 0.91980 0.90232 0.89929 0.92972 0.92743 0.92941 0.92812 0.92658 0.92974 0.90547 0.76916 0.88841 0.89354 0.90319 0.93028 0.88357 0.93020 0.88371 0.90403 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.32 36.01 0.34 -1.09 16 2 C 0.11 2.27 7.01 -81.56 -0.57 1.70 16 3 C -0.22 -5.23 5.41 -105.07 -0.57 -5.80 16 4 C 0.59 15.20 7.18 -12.55 -0.09 15.11 16 5 O -0.61 -16.42 14.34 5.25 0.08 -16.34 16 6 N -0.44 -10.77 2.36 -106.79 -0.25 -11.02 16 7 C -0.36 -8.62 5.04 -14.98 -0.08 -8.69 16 8 H 0.08 1.85 7.15 -52.49 -0.38 1.47 16 9 C 0.06 1.53 2.95 -17.46 -0.05 1.48 16 10 N -0.83 -21.63 12.47 55.50 0.69 -20.94 16 11 Si 0.89 19.05 27.68 -169.99 -4.71 14.35 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.26 -5.52 7.03 56.52 0.40 -5.12 16 15 C 0.14 3.06 3.29 -65.89 -0.22 2.84 16 16 C -0.12 -2.38 6.39 -25.03 -0.16 -2.54 16 17 C -0.12 -2.02 6.80 -25.62 -0.17 -2.20 16 18 C -0.12 -1.86 6.80 -25.62 -0.17 -2.04 16 19 C -0.13 -2.39 6.35 -25.07 -0.16 -2.55 16 20 C 0.10 2.42 8.83 -16.97 -0.15 2.27 16 21 N -0.33 -7.31 12.33 30.87 0.38 -6.93 16 22 N -0.38 -7.15 3.26 -49.96 -0.16 -7.32 16 23 C 0.17 2.40 2.98 -67.75 -0.20 2.20 16 24 C -0.16 -2.20 5.68 -26.59 -0.15 -2.35 16 25 C 0.07 0.70 6.84 37.21 0.25 0.95 16 26 O -0.38 -4.60 10.77 -35.23 -0.38 -4.98 16 27 C 0.07 0.67 6.84 37.20 0.25 0.92 16 28 C -0.16 -2.06 5.68 -26.60 -0.15 -2.21 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.74 7.07 -51.93 -0.37 0.37 16 31 H 0.10 1.97 6.71 -51.93 -0.35 1.62 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 33 H 0.08 1.85 6.99 -51.93 -0.36 1.48 16 34 H 0.08 1.88 7.21 -51.93 -0.37 1.50 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.77 8.14 -51.94 -0.42 0.35 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 41 H 0.08 1.48 6.73 -51.93 -0.35 1.13 16 42 H 0.22 5.11 2.70 -52.48 -0.14 4.96 16 43 H 0.09 1.15 6.64 -51.93 -0.34 0.80 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 50 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -29.47 389.47 -8.68 -38.15 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.14 Total: 11.17 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.05 Total: -2.01 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.66 Total: -46.20 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.30 Total: -21.33 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.47 -8.68 -38.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271120477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.420 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds