Wall clock time and date at job start Wed Apr 1 2020 07:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38107 * 126.29961 * 2 1 4 4 C 1.47357 * 126.42188 * 359.97438 * 3 2 1 5 5 O 1.21632 * 120.00130 * 351.61876 * 4 3 2 6 6 N 1.34770 * 120.00200 * 171.60739 * 4 3 2 7 7 C 1.36984 * 119.99936 * 0.43629 * 6 4 3 8 8 H 1.07999 * 120.00333 * 113.20528 * 7 6 4 9 9 C 1.38978 * 119.99673 * 293.20578 * 7 6 4 10 10 N 1.31409 * 119.99986 * 354.43429 * 9 7 6 11 11 Si 1.86801 * 119.99740 * 174.43642 * 9 7 6 12 12 H 1.48498 * 109.47385 * 60.00254 * 11 9 7 13 13 H 1.48503 * 109.47007 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47198 * 299.99770 * 11 9 7 15 15 C 1.46501 * 120.00138 * 180.42558 * 6 4 3 16 16 C 1.54969 * 110.92228 * 121.66760 * 15 6 4 17 17 C 1.54263 * 104.16012 * 156.29489 * 16 15 6 18 18 C 1.53870 * 106.64333 * 336.44865 * 17 16 15 19 19 C 1.54265 * 106.59709 * 359.96968 * 18 17 16 20 20 C 1.41314 * 107.15661 * 180.24533 * 3 2 1 21 21 N 1.30445 * 108.03023 * 359.61394 * 20 3 2 22 22 N 1.34288 * 126.29742 * 180.02562 * 2 1 3 23 23 C 1.46501 * 125.75212 * 359.95722 * 22 2 1 24 24 C 1.53178 * 109.54464 * 239.82487 * 23 22 2 25 25 C 1.53104 * 109.15460 * 183.23982 * 24 23 22 26 26 O 1.42903 * 109.48771 * 57.47582 * 25 24 23 27 27 C 1.42900 * 114.09495 * 298.88686 * 26 25 24 28 28 C 1.53089 * 109.41846 * 61.15828 * 27 26 25 29 29 H 1.08995 * 109.46904 * 89.97620 * 1 2 3 30 30 H 1.09001 * 109.46742 * 209.97663 * 1 2 3 31 31 H 1.08996 * 109.47035 * 329.97521 * 1 2 3 32 32 H 0.97000 * 119.99534 * 179.97438 * 10 9 7 33 33 H 1.09001 * 110.67302 * 358.36257 * 15 6 4 34 34 H 1.09006 * 110.47574 * 37.64025 * 16 15 6 35 35 H 1.08997 * 110.52654 * 274.97933 * 16 15 6 36 36 H 1.09005 * 110.02940 * 217.13385 * 17 16 15 37 37 H 1.09006 * 110.02952 * 95.75979 * 17 16 15 38 38 H 1.08988 * 110.03533 * 119.25766 * 18 17 16 39 39 H 1.08997 * 110.02837 * 240.64400 * 18 17 16 40 40 H 1.09007 * 110.48390 * 142.28948 * 19 18 17 41 41 H 1.09000 * 110.49240 * 264.80058 * 19 18 17 42 42 H 1.08008 * 125.98986 * 179.73333 * 20 3 2 43 43 H 1.09005 * 109.54194 * 0.02562 * 23 22 2 44 44 H 1.09002 * 109.51790 * 303.05594 * 24 23 22 45 45 H 1.08998 * 109.51991 * 63.24724 * 24 23 22 46 46 H 1.09000 * 109.41076 * 297.49298 * 25 24 23 47 47 H 1.09005 * 109.48300 * 177.50157 * 25 24 23 48 48 H 1.08999 * 109.48549 * 301.17499 * 27 26 25 49 49 H 1.09008 * 109.47822 * 181.13797 * 27 26 25 50 50 H 1.08996 * 109.52381 * 182.48317 * 28 27 26 51 51 H 1.09007 * 109.57148 * 62.32616 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1130 0.0000 4 6 1.8870 2.5201 -0.0005 5 8 0.7113 2.7913 -0.1546 6 7 2.7893 3.5066 0.1699 7 6 4.1145 3.2016 0.3347 8 1 4.8314 3.4817 -0.4230 9 6 4.5366 2.5318 1.4769 10 7 3.6853 2.2877 2.4477 11 14 6.3140 1.9784 1.6319 12 1 7.2089 3.1611 1.5584 13 1 6.5067 1.2914 2.9343 14 1 6.6392 1.0421 0.5262 15 6 2.3528 4.9050 0.1787 16 6 2.7407 5.5975 1.5097 17 6 2.7934 7.0975 1.1534 18 6 3.0413 7.1818 -0.3628 19 6 3.1316 5.7298 -0.8760 20 6 3.6596 0.6496 -0.0058 21 7 3.6343 -0.6545 -0.0006 22 7 2.3020 -1.0823 -0.0005 23 6 1.8505 -2.4760 -0.0002 24 6 2.3836 -3.1871 1.2474 25 6 1.9750 -4.6618 1.1982 26 8 2.4750 -5.2553 -0.0018 27 6 1.9718 -4.6612 -1.2000 28 6 2.3821 -3.1871 -1.2484 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5142 32 1 3.9799 1.8199 3.2448 33 1 1.2787 4.9740 0.0068 34 1 3.7171 5.2514 1.8492 35 1 1.9834 5.4126 2.2715 36 1 3.6082 7.5808 1.6925 37 1 1.8457 7.5742 1.4039 38 1 2.2137 7.6987 -0.8483 39 1 3.9760 7.7069 -0.5596 40 1 2.6593 5.6410 -1.8544 41 1 4.1713 5.4062 -0.9246 42 1 4.5458 1.2671 -0.0113 43 1 0.7609 -2.5063 0.0000 44 1 3.4707 -3.1123 1.2727 45 1 1.9645 -2.7212 2.1392 46 1 0.8877 -4.7372 1.2153 47 1 2.3893 -5.1829 2.0614 48 1 0.8845 -4.7365 -1.2144 49 1 2.3839 -5.1817 -2.0646 50 1 1.9621 -2.7212 -2.1398 51 1 3.4692 -3.1113 -1.2756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271120477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:10:00 Heat of formation + Delta-G solvation = -21.985593 kcal Electronic energy + Delta-G solvation = -32595.729289 eV Core-core repulsion = 28495.929143 eV Total energy + Delta-G solvation = -4099.800147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.29987 -40.49843 -39.91598 -38.12250 -36.32690 -35.41883 -33.29542 -33.11466 -32.20548 -31.16858 -29.41003 -28.86651 -27.81300 -26.76819 -25.81765 -24.64785 -23.12966 -22.47476 -21.35714 -20.93210 -20.69259 -20.10751 -18.56427 -17.72020 -17.32605 -17.08099 -16.88164 -16.82628 -16.22049 -16.20461 -15.93135 -15.76427 -15.18362 -15.13887 -14.88632 -14.53468 -14.43746 -14.14954 -14.06939 -13.99898 -13.64027 -13.38867 -13.30713 -13.21621 -13.12607 -12.72408 -12.52038 -12.40367 -12.26552 -12.23588 -12.00265 -11.98471 -11.93736 -11.82168 -11.63901 -11.32902 -11.30044 -11.11251 -10.77630 -10.69887 -10.27055 -9.94912 -9.30324 -8.80720 -8.22554 -6.22879 0.82455 1.35413 1.41869 1.45216 1.58689 1.64781 2.21492 2.88800 2.95611 3.02263 3.22108 3.40124 3.60030 3.77079 3.83764 3.86647 3.96558 3.99404 4.12629 4.19312 4.20503 4.21604 4.36177 4.48400 4.55953 4.62194 4.65207 4.68777 4.74430 4.74999 4.80673 4.86272 4.88726 4.92853 4.96908 4.99117 5.01540 5.05448 5.10763 5.21165 5.22193 5.26742 5.33501 5.45714 5.54123 5.62264 5.67404 5.88990 6.17427 6.23451 6.27150 6.73408 6.90995 7.06842 7.77801 8.22490 8.77322 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.003514 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.962720 B = 7965.899303 C = 8945.636788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.115 3.885 3 C -0.261 4.261 4 C 0.572 3.428 5 O -0.639 6.639 6 N -0.447 5.447 7 C -0.357 4.357 8 H 0.083 0.917 9 C 0.042 3.958 10 N -0.866 5.866 11 Si 0.935 3.065 12 H -0.255 1.255 13 H -0.289 1.289 14 H -0.258 1.258 15 C 0.127 3.873 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.121 4.121 20 C 0.090 3.910 21 N -0.346 5.346 22 N -0.360 5.360 23 C 0.153 3.847 24 C -0.159 4.159 25 C 0.072 3.928 26 O -0.399 6.399 27 C 0.069 3.931 28 C -0.157 4.157 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.205 0.795 43 H 0.126 0.874 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.080 0.920 49 H 0.115 0.885 50 H 0.083 0.917 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 -7.931 -4.132 9.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.017 4.017 3 C -0.275 4.275 4 C 0.365 3.635 5 O -0.529 6.529 6 N -0.165 5.165 7 C -0.486 4.486 8 H 0.100 0.900 9 C -0.166 4.166 10 N -0.499 5.499 11 Si 0.758 3.242 12 H -0.179 1.179 13 H -0.214 1.214 14 H -0.182 1.182 15 C 0.023 3.977 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.147 4.147 19 C -0.160 4.160 20 C -0.095 4.095 21 N -0.166 5.166 22 N -0.141 5.141 23 C 0.052 3.948 24 C -0.198 4.198 25 C -0.005 4.005 26 O -0.318 6.318 27 C -0.008 4.008 28 C -0.195 4.195 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.220 0.780 43 H 0.143 0.857 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.129 0.871 48 H 0.098 0.902 49 H 0.133 0.867 50 H 0.102 0.898 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.501 -9.203 -4.001 10.628 hybrid contribution 0.530 0.980 0.760 1.349 sum -2.971 -8.223 -3.242 9.324 Atomic orbital electron populations 1.20471 0.85050 1.03906 1.04078 1.21775 0.95599 0.86621 0.97715 1.19941 0.93338 0.93422 1.20845 1.17864 0.84513 0.85533 0.75606 1.90477 1.19010 1.85314 1.58064 1.42944 1.06556 1.02879 1.64127 1.19001 0.83861 1.41461 1.04236 0.90004 1.26198 1.00566 0.95595 0.94242 1.69990 1.36241 1.37278 1.06347 0.86012 0.80550 0.79505 0.78129 1.17908 1.21437 1.18248 1.22068 0.97140 0.82943 0.95580 1.22341 1.00532 0.95524 0.96375 1.22057 1.01893 0.94591 0.96680 1.22008 1.02429 0.95248 0.95032 1.22515 1.00683 0.95479 0.97285 1.25430 0.99697 0.90580 0.93796 1.76981 0.97477 1.13885 1.28251 1.48604 1.03419 1.05686 1.56411 1.21664 1.00324 0.75544 0.97243 1.22523 1.02086 0.98020 0.97179 1.22654 0.99920 0.89898 0.88064 1.87935 1.71006 1.58256 1.14556 1.22707 0.99937 0.90112 0.88006 1.22515 1.02242 0.97773 0.96979 0.88988 0.88818 0.90929 0.92632 0.92168 0.92420 0.95136 0.91040 0.91323 0.90788 0.90380 0.92617 0.91494 0.77958 0.85667 0.92455 0.90784 0.90144 0.87118 0.90155 0.86748 0.89833 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.55 9.32 71.24 0.66 -1.89 16 2 C 0.11 4.77 7.01 42.15 0.30 5.07 16 3 C -0.26 -12.99 5.41 -20.15 -0.11 -13.10 16 4 C 0.57 30.79 7.18 86.64 0.62 31.41 16 5 O -0.64 -35.68 14.34 -4.13 -0.06 -35.73 16 6 N -0.45 -22.81 2.36 -610.03 -1.44 -24.24 16 7 C -0.36 -17.78 5.04 84.07 0.42 -17.36 16 8 H 0.08 3.95 7.15 -2.91 -0.02 3.93 16 9 C 0.04 2.07 2.95 84.93 0.25 2.32 16 10 N -0.87 -46.79 12.47 21.67 0.27 -46.52 16 11 Si 0.93 39.96 27.68 68.60 1.90 41.86 16 12 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 13 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.26 -10.81 7.03 99.48 0.70 -10.11 16 15 C 0.13 5.73 3.29 46.31 0.15 5.88 16 16 C -0.11 -4.61 6.39 31.70 0.20 -4.41 16 17 C -0.11 -3.59 6.80 31.32 0.21 -3.37 16 18 C -0.11 -3.18 6.80 31.32 0.21 -2.97 16 19 C -0.12 -4.48 6.35 31.67 0.20 -4.28 16 20 C 0.09 4.37 8.83 85.66 0.76 5.13 16 21 N -0.35 -15.46 12.33 -56.26 -0.69 -16.16 16 22 N -0.36 -13.60 3.26 -311.98 -1.02 -14.62 16 23 C 0.15 4.06 2.98 45.11 0.13 4.19 16 24 C -0.16 -4.06 5.68 30.69 0.17 -3.89 16 25 C 0.07 1.30 6.84 72.02 0.49 1.79 16 26 O -0.40 -8.47 10.77 -148.98 -1.60 -10.07 16 27 C 0.07 1.17 6.84 72.01 0.49 1.66 16 28 C -0.16 -3.67 5.68 30.68 0.17 -3.50 16 29 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.09 2.30 7.07 -2.39 -0.02 2.28 16 31 H 0.07 2.88 6.71 -2.39 -0.02 2.86 16 32 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.06 2.92 6.99 -2.39 -0.02 2.91 16 34 H 0.06 2.70 7.21 -2.38 -0.02 2.69 16 35 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.07 2.59 6.73 -2.39 -0.02 2.57 16 42 H 0.20 10.07 2.70 -2.91 -0.01 10.06 16 43 H 0.13 2.56 6.64 -2.38 -0.02 2.55 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.11 1.74 8.14 -2.38 -0.02 1.73 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 50 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -68.66 389.47 3.64 -65.03 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.92 Total: 37.75 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.35 Total: 2.70 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -2.88 Total: -101.54 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.66 Total: -45.81 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.90 Total: 41.86 kcal Total: -68.66 3.64 -65.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271120477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.042 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds