Wall clock time and date at job start Wed Apr 1 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38286 * 119.53630 * 2 1 4 4 C 1.38488 * 119.24096 * 180.27294 * 3 2 1 5 5 C 1.50700 * 120.82215 * 179.71215 * 4 3 2 6 6 C 1.39334 * 118.35605 * 359.44185 * 4 3 2 7 7 N 1.39753 * 120.49395 * 180.24854 * 6 4 3 8 8 C 1.34781 * 120.00140 * 306.17003 * 7 6 4 9 9 O 1.21378 * 119.99560 * 354.58535 * 8 7 6 10 10 C 1.49347 * 120.00071 * 174.58860 * 8 7 6 11 11 O 1.21353 * 120.00412 * 359.97438 * 10 8 7 12 12 N 1.34781 * 120.00071 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00333 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47509 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47052 * 300.00194 * 14 13 12 16 16 C 1.53005 * 109.47067 * 59.99840 * 14 13 12 17 17 C 1.53000 * 109.47574 * 179.97438 * 14 13 12 18 18 C 1.50694 * 109.47188 * 179.97438 * 17 14 13 19 19 H 1.08002 * 120.00187 * 0.02562 * 18 17 14 20 20 C 1.37879 * 119.99753 * 180.02562 * 18 17 14 21 21 N 1.31514 * 119.99947 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47373 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47325 * 119.99998 * 22 20 18 25 25 H 1.48500 * 109.47099 * 239.99971 * 22 20 18 26 26 C 1.38901 * 119.01296 * 0.27470 * 6 4 3 27 27 C 1.50701 * 119.66987 * 180.02562 * 26 6 4 28 28 N 1.31808 * 120.65995 * 0.02562 * 26 6 4 29 29 H 1.08997 * 109.47266 * 270.29678 * 1 2 3 30 30 H 1.09005 * 109.47341 * 30.29804 * 1 2 3 31 31 H 1.09005 * 109.47201 * 150.29442 * 1 2 3 32 32 H 1.08000 * 120.37794 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.47072 * 276.36382 * 5 4 3 34 34 H 1.08993 * 109.47250 * 156.36152 * 5 4 3 35 35 H 1.09007 * 109.47001 * 36.35796 * 5 4 3 36 36 H 0.96997 * 120.00191 * 126.16399 * 7 6 4 37 37 H 0.97005 * 119.99714 * 359.97438 * 12 10 8 38 38 H 1.09006 * 109.47108 * 300.00055 * 13 12 10 39 39 H 1.09004 * 109.47062 * 59.99537 * 13 12 10 40 40 H 1.09001 * 109.46893 * 59.99943 * 15 14 13 41 41 H 1.08994 * 109.46843 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.47020 * 299.99514 * 15 14 13 43 43 H 1.08996 * 109.46727 * 60.00212 * 16 14 13 44 44 H 1.08997 * 109.47038 * 180.02562 * 16 14 13 45 45 H 1.09004 * 109.46783 * 300.00327 * 16 14 13 46 46 H 1.08995 * 109.46680 * 300.00361 * 17 14 13 47 47 H 1.08999 * 109.46507 * 59.99687 * 17 14 13 48 48 H 0.97003 * 119.99778 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.47432 * 89.80263 * 27 26 6 50 50 H 1.09002 * 109.47231 * 209.80248 * 27 26 6 51 51 H 1.09002 * 109.47357 * 329.79740 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5735 1.1960 -0.0058 5 6 4.3523 2.4862 -0.0125 6 6 4.2290 -0.0335 0.0006 7 7 5.6253 -0.0928 0.0004 8 6 6.3275 0.5618 -0.9456 9 8 5.7477 1.1210 -1.8536 10 6 7.8189 0.5991 -0.8767 11 8 8.3986 0.0404 0.0313 12 7 8.5211 1.2542 -1.8225 13 6 9.9840 1.2912 -1.7546 14 6 10.5294 2.0920 -2.9387 15 6 10.0962 1.4271 -4.2469 16 6 9.9801 3.5191 -2.8856 17 6 12.0573 2.1313 -2.8675 18 6 12.5944 2.9195 -4.0341 19 1 11.9141 3.3499 -4.7541 20 6 13.9544 3.0914 -4.1822 21 7 14.7827 2.5678 -3.3052 22 14 14.6203 4.0690 -5.6280 23 1 13.4903 4.5492 -6.4633 24 1 15.3937 5.2325 -5.1246 25 1 15.5062 3.2021 -6.4458 26 6 3.4740 -1.1994 0.0065 27 6 4.1677 -2.5373 0.0140 28 7 2.1570 -1.1473 0.0057 29 1 -0.3633 0.0053 1.0276 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8926 -0.5093 32 1 1.6473 2.1376 0.0004 33 1 4.4383 2.8534 -1.0352 34 1 5.3477 2.3118 0.3959 35 1 3.8340 3.2266 0.5970 36 1 6.0891 -0.6050 0.6811 37 1 8.0577 1.7011 -2.5481 38 1 10.2926 1.7645 -0.8224 39 1 10.3754 0.2746 -1.7928 40 1 9.0077 1.3996 -4.2974 41 1 10.4844 1.9979 -5.0904 42 1 10.4876 0.4106 -4.2847 43 1 10.2886 3.9927 -1.9537 44 1 10.3683 4.0894 -3.7294 45 1 8.8915 3.4914 -2.9361 46 1 12.3654 2.6052 -1.9355 47 1 12.4489 1.1148 -2.9050 48 1 15.7395 2.6890 -3.4092 49 1 4.3377 -2.8527 1.0435 50 1 3.5435 -3.2730 -0.4930 51 1 5.1236 -2.4538 -0.5030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411523293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:11 Heat of formation + Delta-G solvation = -56.113279 kcal Electronic energy + Delta-G solvation = -30497.168755 eV Core-core repulsion = 26395.888721 eV Total energy + Delta-G solvation = -4101.280034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60670 -40.30186 -38.77109 -37.25231 -35.94097 -34.41664 -33.77571 -32.63573 -32.13511 -29.37528 -28.15718 -27.67636 -27.09516 -26.56752 -26.47972 -24.31336 -22.76934 -21.97227 -21.36179 -20.36110 -19.43279 -18.12987 -17.51297 -17.31850 -16.48957 -16.36543 -15.85496 -15.39522 -15.29067 -14.99855 -14.52927 -14.51491 -14.25548 -13.93146 -13.63565 -13.62884 -13.50948 -13.28269 -13.18694 -12.92900 -12.84813 -12.57432 -12.41873 -12.24946 -12.11304 -12.10637 -11.96852 -11.80040 -11.24089 -11.06531 -10.86994 -10.72282 -10.69668 -10.49746 -10.29727 -10.05362 -9.95894 -9.69484 -9.56787 -9.24266 -9.04591 -8.97806 -8.70725 -8.40252 -6.04246 -4.05507 0.57530 0.88948 1.31632 2.16841 3.05472 3.27901 3.32419 3.36291 3.38642 3.48982 3.85518 4.20933 4.27434 4.36241 4.42707 4.67133 4.85169 5.01601 5.09316 5.15833 5.19650 5.22332 5.26187 5.31432 5.33987 5.34586 5.48227 5.50342 5.66763 5.69075 5.72896 5.79007 5.84763 5.94827 6.08234 6.09310 6.13193 6.28983 6.29920 6.37366 6.58049 6.61463 6.69970 6.98695 7.01253 7.04264 7.26813 7.55516 7.58335 7.66268 7.69187 7.92703 7.94704 8.35735 8.99263 9.58013 11.07149 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.001924 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.723546 B =14549.162872 C =14994.670055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.129 3.871 3 C -0.168 4.168 4 C -0.023 4.023 5 C -0.116 4.116 6 C 0.078 3.922 7 N -0.645 5.645 8 C 0.508 3.492 9 O -0.499 6.499 10 C 0.502 3.498 11 O -0.523 6.523 12 N -0.683 5.683 13 C 0.124 3.876 14 C -0.073 4.073 15 C -0.130 4.130 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.511 4.511 19 H 0.061 0.939 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.135 3.865 27 C -0.108 4.108 28 N -0.477 5.477 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.423 0.577 37 H 0.412 0.588 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.260 0.740 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.257 -4.809 8.458 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.009 4.009 3 C -0.188 4.188 4 C -0.033 4.033 5 C -0.172 4.172 6 C -0.018 4.018 7 N -0.296 5.296 8 C 0.290 3.710 9 O -0.372 6.372 10 C 0.281 3.719 11 O -0.400 6.400 12 N -0.336 5.336 13 C 0.002 3.998 14 C -0.074 4.074 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.005 4.005 27 C -0.165 4.165 28 N -0.189 5.189 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.262 0.738 37 H 0.249 0.751 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.464 -5.556 8.472 28.337 hybrid contribution 1.056 1.299 -0.752 1.835 sum -25.407 -4.258 7.720 26.894 Atomic orbital electron populations 1.20704 0.88516 1.03616 1.03119 1.21277 0.97091 0.88020 0.94481 1.21723 0.93227 0.99553 1.04316 1.20347 0.94015 0.94799 0.94096 1.20905 0.99303 0.93233 1.03762 1.18213 0.83189 0.93792 1.06582 1.42962 1.03964 1.51557 1.31107 1.20565 0.89008 0.79338 0.82053 1.90787 1.71451 1.42496 1.32423 1.19752 0.87115 0.81270 0.83799 1.90779 1.70909 1.44453 1.33857 1.46078 1.08979 1.51668 1.26866 1.21881 0.75869 1.01576 1.00464 1.20947 1.00253 0.93896 0.92257 1.21794 0.97877 1.00708 0.98367 1.21794 0.97518 0.96674 1.02733 1.19096 0.85778 0.97590 0.97626 1.21209 0.91405 1.32893 1.09465 0.92133 1.25016 0.97296 0.95955 0.96257 1.69970 1.02769 1.45118 1.35472 0.86580 0.79041 0.79899 0.82731 1.19775 1.21126 1.21127 1.21304 0.89228 0.94646 0.95344 1.20734 1.00098 0.92266 1.03388 1.67379 1.08173 1.29265 1.14036 0.90317 0.90590 0.90377 0.84366 0.89023 0.91822 0.90855 0.73808 0.75092 0.90960 0.90953 0.95076 0.91175 0.93220 0.93234 0.91175 0.95093 0.96235 0.96232 0.93066 0.89961 0.89869 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.16 36.00 0.37 -0.25 16 2 C 0.13 1.20 6.78 -82.56 -0.56 0.64 16 3 C -0.17 -1.50 9.46 -39.47 -0.37 -1.87 16 4 C -0.02 -0.24 5.53 -104.12 -0.58 -0.82 16 5 C -0.12 -1.10 8.36 36.01 0.30 -0.80 16 6 C 0.08 0.84 5.80 -83.59 -0.48 0.36 16 7 N -0.65 -6.76 3.89 -10.20 -0.04 -6.80 16 8 C 0.51 6.35 6.13 -11.63 -0.07 6.28 16 9 O -0.50 -7.00 13.96 5.47 0.08 -6.93 16 10 C 0.50 7.02 7.89 -11.63 -0.09 6.93 16 11 O -0.52 -8.30 16.48 5.49 0.09 -8.21 16 12 N -0.68 -9.71 4.95 -60.77 -0.30 -10.01 16 13 C 0.12 2.04 4.56 -4.05 -0.02 2.02 16 14 C -0.07 -1.33 0.54 -154.50 -0.08 -1.42 16 15 C -0.13 -2.24 8.05 37.16 0.30 -1.95 16 16 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 17 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 18 C -0.51 -13.28 7.65 -34.44 -0.26 -13.54 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 22 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.13 1.42 6.80 -82.36 -0.56 0.86 16 27 C -0.11 -0.86 9.87 36.01 0.36 -0.51 16 28 N -0.48 -5.23 10.18 -5.57 -0.06 -5.29 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.09 0.96 7.26 -51.92 -0.38 0.59 16 34 H 0.06 0.66 6.45 -51.93 -0.33 0.32 16 35 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.42 3.79 8.21 -40.82 -0.34 3.45 16 37 H 0.41 5.52 5.63 -40.82 -0.23 5.29 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 41 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 45 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.08 0.60 7.46 -51.93 -0.39 0.21 16 LS Contribution 410.37 15.07 6.18 6.18 Total: -1.00 -31.16 410.37 -7.99 -39.15 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.99 Total: 4.95 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.67 Total: -3.80 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.34 Total: -47.26 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.17 Total: -15.13 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.16 -7.99 -39.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411523293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.966 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds