Wall clock time and date at job start Wed Apr 1 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38286 * 119.53630 * 2 1 4 4 C 1.38488 * 119.24096 * 180.27294 * 3 2 1 5 5 C 1.50700 * 120.82215 * 179.71215 * 4 3 2 6 6 C 1.39334 * 118.35605 * 359.44185 * 4 3 2 7 7 N 1.39753 * 120.49395 * 180.24854 * 6 4 3 8 8 C 1.34781 * 120.00140 * 306.17003 * 7 6 4 9 9 O 1.21378 * 119.99560 * 354.58535 * 8 7 6 10 10 C 1.49347 * 120.00071 * 174.58860 * 8 7 6 11 11 O 1.21353 * 120.00412 * 359.97438 * 10 8 7 12 12 N 1.34781 * 120.00071 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00333 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47509 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47052 * 300.00194 * 14 13 12 16 16 C 1.53005 * 109.47067 * 59.99840 * 14 13 12 17 17 C 1.53000 * 109.47574 * 179.97438 * 14 13 12 18 18 C 1.50694 * 109.47188 * 179.97438 * 17 14 13 19 19 H 1.08002 * 120.00187 * 0.02562 * 18 17 14 20 20 C 1.37879 * 119.99753 * 180.02562 * 18 17 14 21 21 N 1.31514 * 119.99947 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99851 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47373 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47325 * 119.99998 * 22 20 18 25 25 H 1.48500 * 109.47099 * 239.99971 * 22 20 18 26 26 C 1.38901 * 119.01296 * 0.27470 * 6 4 3 27 27 C 1.50701 * 119.66987 * 180.02562 * 26 6 4 28 28 N 1.31808 * 120.65995 * 0.02562 * 26 6 4 29 29 H 1.08997 * 109.47266 * 270.29678 * 1 2 3 30 30 H 1.09005 * 109.47341 * 30.29804 * 1 2 3 31 31 H 1.09005 * 109.47201 * 150.29442 * 1 2 3 32 32 H 1.08000 * 120.37794 * 0.02562 * 3 2 1 33 33 H 1.09008 * 109.47072 * 276.36382 * 5 4 3 34 34 H 1.08993 * 109.47250 * 156.36152 * 5 4 3 35 35 H 1.09007 * 109.47001 * 36.35796 * 5 4 3 36 36 H 0.96997 * 120.00191 * 126.16399 * 7 6 4 37 37 H 0.97005 * 119.99714 * 359.97438 * 12 10 8 38 38 H 1.09006 * 109.47108 * 300.00055 * 13 12 10 39 39 H 1.09004 * 109.47062 * 59.99537 * 13 12 10 40 40 H 1.09001 * 109.46893 * 59.99943 * 15 14 13 41 41 H 1.08994 * 109.46843 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.47020 * 299.99514 * 15 14 13 43 43 H 1.08996 * 109.46727 * 60.00212 * 16 14 13 44 44 H 1.08997 * 109.47038 * 180.02562 * 16 14 13 45 45 H 1.09004 * 109.46783 * 300.00327 * 16 14 13 46 46 H 1.08995 * 109.46680 * 300.00361 * 17 14 13 47 47 H 1.08999 * 109.46507 * 59.99687 * 17 14 13 48 48 H 0.97003 * 119.99778 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.47432 * 89.80263 * 27 26 6 50 50 H 1.09002 * 109.47231 * 209.80248 * 27 26 6 51 51 H 1.09002 * 109.47357 * 329.79740 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5735 1.1960 -0.0058 5 6 4.3523 2.4862 -0.0125 6 6 4.2290 -0.0335 0.0006 7 7 5.6253 -0.0928 0.0004 8 6 6.3275 0.5618 -0.9456 9 8 5.7477 1.1210 -1.8536 10 6 7.8189 0.5991 -0.8767 11 8 8.3986 0.0404 0.0313 12 7 8.5211 1.2542 -1.8225 13 6 9.9840 1.2912 -1.7546 14 6 10.5294 2.0920 -2.9387 15 6 10.0962 1.4271 -4.2469 16 6 9.9801 3.5191 -2.8856 17 6 12.0573 2.1313 -2.8675 18 6 12.5944 2.9195 -4.0341 19 1 11.9141 3.3499 -4.7541 20 6 13.9544 3.0914 -4.1822 21 7 14.7827 2.5678 -3.3052 22 14 14.6203 4.0690 -5.6280 23 1 13.4903 4.5492 -6.4633 24 1 15.3937 5.2325 -5.1246 25 1 15.5062 3.2021 -6.4458 26 6 3.4740 -1.1994 0.0065 27 6 4.1677 -2.5373 0.0140 28 7 2.1570 -1.1473 0.0057 29 1 -0.3633 0.0053 1.0276 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8926 -0.5093 32 1 1.6473 2.1376 0.0004 33 1 4.4383 2.8534 -1.0352 34 1 5.3477 2.3118 0.3959 35 1 3.8340 3.2266 0.5970 36 1 6.0891 -0.6050 0.6811 37 1 8.0577 1.7011 -2.5481 38 1 10.2926 1.7645 -0.8224 39 1 10.3754 0.2746 -1.7928 40 1 9.0077 1.3996 -4.2974 41 1 10.4844 1.9979 -5.0904 42 1 10.4876 0.4106 -4.2847 43 1 10.2886 3.9927 -1.9537 44 1 10.3683 4.0894 -3.7294 45 1 8.8915 3.4914 -2.9361 46 1 12.3654 2.6052 -1.9355 47 1 12.4489 1.1148 -2.9050 48 1 15.7395 2.6890 -3.4092 49 1 4.3377 -2.8527 1.0435 50 1 3.5435 -3.2730 -0.4930 51 1 5.1236 -2.4538 -0.5030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411523293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:09 Heat of formation + Delta-G solvation = -75.357080 kcal Electronic energy + Delta-G solvation = -30498.003229 eV Core-core repulsion = 26395.888721 eV Total energy + Delta-G solvation = -4102.114508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.48843 -41.27572 -39.86638 -38.67967 -36.83373 -35.29343 -35.12277 -33.96792 -33.35500 -30.00259 -29.30194 -28.85325 -28.41188 -27.98653 -27.51106 -25.63463 -24.32024 -22.70778 -22.26069 -21.33895 -20.57302 -19.44577 -18.51650 -18.32729 -18.17789 -17.56974 -16.94813 -16.60947 -16.35404 -15.95347 -15.79314 -15.69606 -15.40306 -14.88111 -14.77237 -14.70179 -14.38921 -14.31278 -14.12169 -13.95117 -13.92366 -13.80977 -13.62113 -13.17086 -12.96870 -12.94429 -12.90658 -12.72914 -12.68569 -12.62989 -12.60402 -12.34826 -12.24659 -11.97578 -11.56452 -11.55095 -11.19186 -10.92911 -10.84292 -10.50950 -10.48517 -10.32704 -10.28652 -9.45965 -8.13703 -6.20476 -0.21478 0.15176 0.31326 1.14227 1.41675 1.43737 1.54618 1.98818 2.42577 2.49697 2.60203 3.19869 3.21238 3.28946 3.51850 3.62961 3.89673 4.00146 4.04814 4.15045 4.19362 4.31395 4.50604 4.52366 4.62621 4.64388 4.64873 4.66698 4.68618 4.70822 4.82370 4.89877 4.93561 4.99479 5.00284 5.09210 5.11401 5.15343 5.18671 5.21619 5.23733 5.41391 5.50148 5.51800 5.56473 5.62931 5.79050 5.80517 5.90816 6.19332 6.32727 6.57889 6.80859 6.94039 6.94509 7.47011 8.98621 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.001924 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.723546 B =14549.162872 C =14994.670055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.121 3.879 3 C -0.168 4.168 4 C -0.037 4.037 5 C -0.111 4.111 6 C 0.057 3.943 7 N -0.630 5.630 8 C 0.517 3.483 9 O -0.514 6.514 10 C 0.506 3.494 11 O -0.542 6.542 12 N -0.677 5.677 13 C 0.137 3.863 14 C -0.066 4.066 15 C -0.125 4.125 16 C -0.125 4.125 17 C 0.041 3.959 18 C -0.513 4.513 19 H 0.070 0.930 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.956 3.044 23 H -0.259 1.259 24 H -0.285 1.285 25 H -0.285 1.285 26 C 0.125 3.875 27 C -0.106 4.106 28 N -0.499 5.499 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.166 0.834 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.429 0.571 37 H 0.418 0.582 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.063 0.937 46 H -0.008 1.008 47 H -0.009 1.009 48 H 0.259 0.741 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.924 -4.074 7.984 30.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.016 4.016 3 C -0.188 4.188 4 C -0.046 4.046 5 C -0.168 4.168 6 C -0.038 4.038 7 N -0.281 5.281 8 C 0.299 3.701 9 O -0.388 6.388 10 C 0.286 3.714 11 O -0.420 6.420 12 N -0.330 5.330 13 C 0.014 3.986 14 C -0.066 4.066 15 C -0.183 4.183 16 C -0.182 4.182 17 C 0.004 3.996 18 C -0.551 4.551 19 H 0.088 0.912 20 C -0.201 4.201 21 N -0.577 5.577 22 Si 0.782 3.218 23 H -0.183 1.183 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.014 4.014 27 C -0.163 4.163 28 N -0.211 5.211 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.183 0.817 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.269 0.731 37 H 0.257 0.743 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.068 0.932 49 H 0.116 0.884 50 H 0.103 0.897 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -29.168 -4.827 8.001 30.628 hybrid contribution 1.789 1.031 -0.533 2.132 sum -27.379 -3.796 7.469 28.632 Atomic orbital electron populations 1.20802 0.86250 1.04460 1.04214 1.21878 0.98695 0.87803 0.93249 1.22030 0.92761 1.00641 1.03394 1.20611 0.94923 0.94865 0.94174 1.20873 0.98951 0.93492 1.03475 1.18361 0.82941 0.94425 1.08118 1.42808 1.04097 1.50670 1.30483 1.20123 0.88001 0.79645 0.82332 1.90784 1.71335 1.43527 1.33168 1.19970 0.87835 0.80445 0.83106 1.90776 1.71533 1.45140 1.34562 1.45863 1.07846 1.51979 1.27332 1.21513 0.77295 1.00602 0.99200 1.20741 0.96583 0.95514 0.93801 1.21730 0.99846 0.99836 0.96854 1.21727 0.99489 0.95162 1.01840 1.18960 0.89769 0.95207 0.95711 1.21619 0.91608 1.32071 1.09809 0.91153 1.25896 0.97972 0.97260 0.98951 1.70110 1.02965 1.47018 1.37598 0.85532 0.78535 0.78241 0.79536 1.18303 1.21081 1.21134 1.21620 0.89417 0.95381 0.95019 1.20778 0.99781 0.91341 1.04414 1.67456 1.08358 1.30278 1.14959 0.88973 0.88551 0.90720 0.81661 0.89970 0.92937 0.88647 0.73067 0.74300 0.91714 0.91803 0.91907 0.92503 0.93850 0.93764 0.92526 0.91823 0.98957 0.99029 0.93192 0.88390 0.89733 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.16 71.23 0.72 -0.23 16 2 C 0.12 2.03 6.78 42.56 0.29 2.32 16 3 C -0.17 -2.63 9.46 22.34 0.21 -2.42 16 4 C -0.04 -0.70 5.53 -19.54 -0.11 -0.81 16 5 C -0.11 -1.95 8.36 71.24 0.60 -1.35 16 6 C 0.06 1.17 5.80 38.30 0.22 1.39 16 7 N -0.63 -12.64 3.89 -304.53 -1.18 -13.82 16 8 C 0.52 12.36 6.13 87.24 0.53 12.90 16 9 O -0.51 -13.72 13.96 -3.33 -0.05 -13.77 16 10 C 0.51 13.69 7.89 87.24 0.69 14.37 16 11 O -0.54 -16.91 16.48 -3.26 -0.05 -16.96 16 12 N -0.68 -18.38 4.95 -464.52 -2.30 -20.68 16 13 C 0.14 4.48 4.56 86.38 0.39 4.87 16 14 C -0.07 -2.39 0.54 -52.18 -0.03 -2.42 16 15 C -0.13 -4.18 8.05 71.98 0.58 -3.60 16 16 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 17 C 0.04 2.00 4.04 29.85 0.12 2.12 16 18 C -0.51 -26.89 7.65 25.60 0.20 -26.69 16 19 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 20 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 21 N -0.94 -55.66 13.29 21.45 0.28 -55.38 16 22 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 26 C 0.13 2.52 6.80 42.72 0.29 2.81 16 27 C -0.11 -1.60 9.87 71.24 0.70 -0.90 16 28 N -0.50 -10.34 10.18 -171.54 -1.75 -12.08 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.52 8.08 -2.38 -0.02 0.50 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.08 1.61 7.26 -2.38 -0.02 1.59 16 34 H 0.05 1.02 6.45 -2.39 -0.02 1.00 16 35 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.43 7.36 8.21 -92.71 -0.76 6.60 16 37 H 0.42 10.29 5.63 -92.70 -0.52 9.77 16 38 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 39 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 41 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 45 H 0.06 1.67 6.86 -2.38 -0.02 1.66 16 46 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 47 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.07 1.13 7.46 -2.39 -0.02 1.11 16 Total: -1.00 -67.90 410.37 3.11 -64.79 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.32 Total: 23.64 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 6.45 Total: -0.91 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -4.95 Total: -101.96 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.10 Total: -30.73 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.90 3.11 -64.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411523293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.570 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds