Wall clock time and date at job start Wed Apr 1 2020 07:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38043 * 126.28673 * 2 1 4 4 C 1.47428 * 126.41650 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99784 * 5.16107 * 4 3 2 6 6 N 1.34773 * 119.99934 * 185.15649 * 4 3 2 7 7 C 1.47425 * 125.64691 * 175.23973 * 6 4 3 8 8 C 1.54915 * 104.83344 * 203.86237 * 7 6 4 9 9 C 1.55152 * 101.58178 * 322.99430 * 8 7 6 10 10 O 1.42905 * 110.71971 * 277.13710 * 9 8 7 11 11 C 1.50697 * 110.72043 * 154.04103 * 9 8 7 12 12 H 1.08000 * 120.00113 * 270.72167 * 11 9 8 13 13 C 1.37878 * 120.00267 * 90.72598 * 11 9 8 14 14 N 1.31512 * 120.00451 * 171.46324 * 13 11 9 15 15 Si 1.86798 * 119.99696 * 351.45819 * 13 11 9 16 16 H 1.48501 * 109.47019 * 92.49735 * 15 13 11 17 17 H 1.48506 * 109.47231 * 212.49439 * 15 13 11 18 18 H 1.48497 * 109.47214 * 332.49557 * 15 13 11 19 19 C 1.47028 * 125.64978 * 354.93280 * 6 4 3 20 20 C 1.41293 * 107.16947 * 179.75667 * 3 2 1 21 21 N 1.30447 * 108.01950 * 0.23859 * 20 3 2 22 22 N 1.34259 * 126.29312 * 180.17690 * 2 1 3 23 23 C 1.46494 * 125.75503 * 359.95720 * 22 2 1 24 24 C 1.52999 * 109.47496 * 240.31019 * 23 22 2 25 25 C 1.52997 * 109.47301 * 180.02562 * 24 23 22 26 26 C 1.52998 * 109.47043 * 60.00287 * 25 24 23 27 27 C 1.52998 * 109.46882 * 299.99438 * 26 25 24 28 28 C 1.52998 * 109.46769 * 120.31355 * 23 22 2 29 29 H 1.09003 * 109.46656 * 90.02810 * 1 2 3 30 30 H 1.09004 * 109.46671 * 210.02037 * 1 2 3 31 31 H 1.08994 * 109.47501 * 330.02638 * 1 2 3 32 32 H 1.08998 * 110.36806 * 322.70208 * 7 6 4 33 33 H 1.08998 * 110.36834 * 84.91985 * 7 6 4 34 34 H 1.09006 * 110.99968 * 81.06790 * 8 7 6 35 35 H 1.08996 * 111.00537 * 204.91472 * 8 7 6 36 36 H 0.96697 * 113.99974 * 184.67337 * 10 9 8 37 37 H 0.96996 * 120.00728 * 179.97438 * 14 13 11 38 38 H 1.08992 * 109.88117 * 298.62018 * 19 6 4 39 39 H 1.08999 * 109.88003 * 59.79157 * 19 6 4 40 40 H 1.07999 * 125.99109 * 180.23903 * 20 3 2 41 41 H 1.08997 * 109.47201 * 0.31045 * 23 22 2 42 42 H 1.09006 * 109.47403 * 300.00530 * 24 23 22 43 43 H 1.08999 * 109.47094 * 59.99769 * 24 23 22 44 44 H 1.08997 * 109.47121 * 299.99858 * 25 24 23 45 45 H 1.09001 * 109.46781 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.47057 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.47513 * 59.99810 * 26 25 24 48 48 H 1.08996 * 109.47771 * 300.00142 * 27 26 25 49 49 H 1.09002 * 109.46838 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.47276 * 299.99698 * 28 23 22 51 51 H 1.08997 * 109.47726 * 60.00389 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 0.0005 5 8 0.7036 2.7889 0.0958 6 7 2.7952 3.5094 -0.1044 7 6 2.4914 4.9476 -0.2162 8 6 3.7342 5.5630 -0.9066 9 6 4.8837 4.7339 -0.2754 10 8 5.2511 5.2671 0.9986 11 6 6.0759 4.6881 -1.1960 12 1 6.1585 3.9039 -1.9339 13 6 7.0613 5.6473 -1.0962 14 7 8.1779 5.5165 -1.7785 15 14 6.8101 7.1328 0.0081 16 1 7.3699 6.8494 1.3541 17 1 7.5025 8.3084 -0.5784 18 1 5.3584 7.4218 0.1266 19 6 4.2548 3.3332 -0.1201 20 6 3.6590 0.6500 0.0057 21 7 3.6341 -0.6542 0.0038 22 7 2.3018 -1.0821 -0.0033 23 6 1.8503 -2.4757 -0.0068 24 6 2.3735 -3.1845 1.2441 25 6 1.9024 -4.6402 1.2402 26 6 2.4376 -5.3460 -0.0073 27 6 1.9143 -4.6373 -1.2582 28 6 2.3850 -3.1819 -1.2542 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8899 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 1.6026 5.1012 -0.8281 33 1 2.3502 5.3835 0.7728 34 1 3.6940 5.4166 -1.9860 35 1 3.8343 6.6201 -0.6608 36 1 6.0124 4.8293 1.4034 37 1 8.8710 6.1915 -1.7086 38 1 4.5836 2.8808 0.8154 39 1 4.5430 2.7022 -0.9609 40 1 4.5449 1.2678 0.0109 41 1 0.7607 -2.5047 -0.0117 42 1 3.4631 -3.1556 1.2492 43 1 1.9926 -2.6814 2.1329 44 1 0.8128 -4.6694 1.2350 45 1 2.2748 -5.1449 2.1317 46 1 2.1016 -6.3829 -0.0103 47 1 3.5272 -5.3167 -0.0021 48 1 0.8247 -4.6666 -1.2635 49 1 2.2952 -5.1405 -2.1469 50 1 2.0122 -2.6771 -2.1455 51 1 3.4745 -3.1531 -1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:07:39 Heat of formation + Delta-G solvation = -16.485379 kcal Electronic energy + Delta-G solvation = -31618.660283 eV Core-core repulsion = 27519.098643 eV Total energy + Delta-G solvation = -4099.561640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.54149 -39.42569 -38.52185 -37.40938 -34.72676 -33.47027 -32.38307 -32.02238 -31.23851 -30.62903 -29.09273 -28.17760 -27.20999 -25.28625 -23.62591 -23.05151 -22.98766 -21.39665 -20.49654 -20.01007 -19.45286 -18.69457 -17.69916 -17.08446 -15.91784 -15.67781 -15.62292 -15.48657 -15.06367 -14.87847 -14.68673 -14.44188 -14.40845 -13.87499 -13.52522 -13.27763 -13.22545 -13.07346 -12.95833 -12.74170 -12.68525 -12.56363 -12.43274 -12.13295 -12.05857 -11.68879 -11.57336 -11.56302 -11.44203 -11.05052 -10.96356 -10.91410 -10.68993 -10.59917 -10.50829 -10.32912 -10.05409 -9.47836 -9.29344 -9.25858 -8.60457 -8.57707 -8.52411 -8.01349 -6.24947 -4.35990 1.61141 2.28941 2.38975 3.39194 3.49714 3.51845 3.67100 3.77564 4.08070 4.26021 4.38002 4.42530 4.54853 4.57293 4.75511 4.78795 4.92839 4.96604 4.98941 4.99493 5.05014 5.13868 5.16610 5.24129 5.38371 5.45726 5.51210 5.53493 5.57749 5.61087 5.65048 5.73558 5.76025 5.77305 5.84535 5.85210 5.86202 6.00552 6.03834 6.07598 6.20697 6.34096 6.53749 6.63716 6.76989 6.87511 6.91664 7.10114 7.37381 7.68306 8.05162 8.08385 8.61491 8.66794 8.77464 9.35774 10.84080 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.002661 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.203090 B =10520.552671 C =11505.241457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.148 3.852 3 C -0.287 4.287 4 C 0.606 3.394 5 O -0.566 6.566 6 N -0.605 5.605 7 C 0.110 3.890 8 C -0.123 4.123 9 C 0.219 3.781 10 O -0.563 6.563 11 C -0.555 4.555 12 H 0.082 0.918 13 C 0.074 3.926 14 N -0.884 5.884 15 Si 0.935 3.065 16 H -0.291 1.291 17 H -0.322 1.322 18 H -0.261 1.261 19 C 0.080 3.920 20 C 0.074 3.926 21 N -0.296 5.296 22 N -0.359 5.359 23 C 0.162 3.838 24 C -0.127 4.127 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.127 4.127 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.372 0.628 37 H 0.267 0.733 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.203 0.797 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.418 -18.966 4.196 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.016 3.984 3 C -0.301 4.301 4 C 0.397 3.603 5 O -0.447 6.447 6 N -0.337 5.337 7 C -0.012 4.012 8 C -0.161 4.161 9 C 0.178 3.822 10 O -0.370 6.370 11 C -0.592 4.592 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.519 5.519 15 Si 0.769 3.231 16 H -0.218 1.218 17 H -0.253 1.253 18 H -0.187 1.187 19 C -0.043 4.043 20 C -0.113 4.113 21 N -0.115 5.115 22 N -0.138 5.138 23 C 0.060 3.940 24 C -0.165 4.165 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.154 4.154 28 C -0.165 4.165 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.220 0.780 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.219 0.781 41 H 0.118 0.882 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.734 -19.657 4.068 24.323 hybrid contribution 0.264 1.138 0.552 1.292 sum -13.470 -18.520 4.620 23.362 Atomic orbital electron populations 1.20669 0.86514 1.04571 1.03863 1.21426 0.94661 0.86379 0.95900 1.19960 0.92952 0.93335 1.23873 1.16821 0.84407 0.83157 0.75937 1.90661 1.16654 1.84206 1.53221 1.48259 1.07231 1.06730 1.71496 1.22263 0.98740 0.79839 1.00347 1.23141 0.92483 1.00470 1.00009 1.20074 0.93395 0.86868 0.81831 1.86223 1.52684 1.62133 1.36000 1.21197 1.03325 1.14791 1.19886 0.90013 1.25111 0.94077 0.98405 0.95499 1.69958 1.05782 1.34933 1.41239 0.85952 0.78551 0.80048 0.78588 1.21831 1.25276 1.18667 1.23209 0.78841 1.01579 1.00686 1.24907 0.98178 0.91883 0.96357 1.77156 0.95863 1.13291 1.25191 1.48655 1.04211 1.05474 1.55507 1.21407 0.99122 0.76201 0.97246 1.21879 1.02884 0.95471 0.96303 1.21510 1.00886 0.94443 0.98523 1.21595 1.01252 0.99055 0.94215 1.21505 1.00922 0.94446 0.98499 1.21863 1.02853 0.95457 0.96330 0.89882 0.91560 0.87379 0.91524 0.91935 0.89785 0.89902 0.77954 0.92322 0.91909 0.90370 0.78090 0.88172 0.90121 0.91411 0.91725 0.91180 0.91618 0.91504 0.91723 0.91136 0.91338 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.45 36.01 0.34 -0.75 16 2 C 0.15 2.10 7.00 -81.60 -0.57 1.53 16 3 C -0.29 -4.78 6.09 -105.07 -0.64 -5.42 16 4 C 0.61 11.37 7.84 -12.52 -0.10 11.28 16 5 O -0.57 -11.43 15.11 5.28 0.08 -11.35 16 6 N -0.61 -11.38 3.33 -171.78 -0.57 -11.95 16 7 C 0.11 2.04 6.88 -2.53 -0.02 2.03 16 8 C -0.12 -2.45 5.89 -24.58 -0.14 -2.60 16 9 C 0.22 4.64 0.70 -89.94 -0.06 4.57 16 10 O -0.56 -11.74 8.98 -35.23 -0.32 -12.05 16 11 C -0.55 -13.96 8.73 -34.44 -0.30 -14.27 16 12 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 13 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 14 N -0.88 -25.32 13.96 55.43 0.77 -24.55 16 15 Si 0.93 22.09 24.75 -169.99 -4.21 17.89 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.32 -7.91 7.11 56.52 0.40 -7.51 16 18 H -0.26 -6.05 5.01 56.52 0.28 -5.77 16 19 C 0.08 1.49 4.35 -3.06 -0.01 1.47 16 20 C 0.07 1.19 10.45 -16.98 -0.18 1.01 16 21 N -0.30 -4.54 12.33 30.86 0.38 -4.16 16 22 N -0.36 -4.67 3.25 -50.17 -0.16 -4.83 16 23 C 0.16 1.50 2.89 -67.94 -0.20 1.30 16 24 C -0.13 -1.07 5.46 -26.73 -0.15 -1.22 16 25 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 26 C -0.12 -0.72 5.92 -26.73 -0.16 -0.88 16 27 C -0.12 -0.71 5.92 -26.75 -0.16 -0.87 16 28 C -0.13 -1.10 5.45 -26.75 -0.15 -1.24 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.54 7.08 -51.93 -0.37 0.17 16 31 H 0.11 1.41 6.41 -51.93 -0.33 1.08 16 32 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.67 8.04 -51.93 -0.42 1.26 16 35 H 0.08 1.68 6.32 -51.93 -0.33 1.36 16 36 H 0.37 6.97 8.42 45.56 0.38 7.35 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.06 1.09 7.05 -51.93 -0.37 0.72 16 39 H 0.08 1.47 6.24 -51.93 -0.32 1.15 16 40 H 0.20 3.13 4.51 -52.49 -0.24 2.89 16 41 H 0.10 0.75 6.64 -51.93 -0.34 0.40 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -31.49 387.95 -8.42 -39.90 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.49 Total: 8.29 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.75 Total: -3.03 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.42 Total: -45.49 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.24 Total: -23.40 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.21 Total: 17.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.49 -8.42 -39.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.416 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds