Wall clock time and date at job start Wed Apr 1 2020 07:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38043 * 126.28673 * 2 1 4 4 C 1.47428 * 126.41650 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99784 * 5.16107 * 4 3 2 6 6 N 1.34773 * 119.99934 * 185.15649 * 4 3 2 7 7 C 1.47425 * 125.64691 * 175.23973 * 6 4 3 8 8 C 1.54915 * 104.83344 * 203.86237 * 7 6 4 9 9 C 1.55152 * 101.58178 * 322.99430 * 8 7 6 10 10 O 1.42905 * 110.71971 * 277.13710 * 9 8 7 11 11 C 1.50697 * 110.72043 * 154.04103 * 9 8 7 12 12 H 1.08000 * 120.00113 * 270.72167 * 11 9 8 13 13 C 1.37878 * 120.00267 * 90.72598 * 11 9 8 14 14 N 1.31512 * 120.00451 * 171.46324 * 13 11 9 15 15 Si 1.86798 * 119.99696 * 351.45819 * 13 11 9 16 16 H 1.48501 * 109.47019 * 92.49735 * 15 13 11 17 17 H 1.48506 * 109.47231 * 212.49439 * 15 13 11 18 18 H 1.48497 * 109.47214 * 332.49557 * 15 13 11 19 19 C 1.47028 * 125.64978 * 354.93280 * 6 4 3 20 20 C 1.41293 * 107.16947 * 179.75667 * 3 2 1 21 21 N 1.30447 * 108.01950 * 0.23859 * 20 3 2 22 22 N 1.34259 * 126.29312 * 180.17690 * 2 1 3 23 23 C 1.46494 * 125.75503 * 359.95720 * 22 2 1 24 24 C 1.52999 * 109.47496 * 240.31019 * 23 22 2 25 25 C 1.52997 * 109.47301 * 180.02562 * 24 23 22 26 26 C 1.52998 * 109.47043 * 60.00287 * 25 24 23 27 27 C 1.52998 * 109.46882 * 299.99438 * 26 25 24 28 28 C 1.52998 * 109.46769 * 120.31355 * 23 22 2 29 29 H 1.09003 * 109.46656 * 90.02810 * 1 2 3 30 30 H 1.09004 * 109.46671 * 210.02037 * 1 2 3 31 31 H 1.08994 * 109.47501 * 330.02638 * 1 2 3 32 32 H 1.08998 * 110.36806 * 322.70208 * 7 6 4 33 33 H 1.08998 * 110.36834 * 84.91985 * 7 6 4 34 34 H 1.09006 * 110.99968 * 81.06790 * 8 7 6 35 35 H 1.08996 * 111.00537 * 204.91472 * 8 7 6 36 36 H 0.96697 * 113.99974 * 184.67337 * 10 9 8 37 37 H 0.96996 * 120.00728 * 179.97438 * 14 13 11 38 38 H 1.08992 * 109.88117 * 298.62018 * 19 6 4 39 39 H 1.08999 * 109.88003 * 59.79157 * 19 6 4 40 40 H 1.07999 * 125.99109 * 180.23903 * 20 3 2 41 41 H 1.08997 * 109.47201 * 0.31045 * 23 22 2 42 42 H 1.09006 * 109.47403 * 300.00530 * 24 23 22 43 43 H 1.08999 * 109.47094 * 59.99769 * 24 23 22 44 44 H 1.08997 * 109.47121 * 299.99858 * 25 24 23 45 45 H 1.09001 * 109.46781 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.47057 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.47513 * 59.99810 * 26 25 24 48 48 H 1.08996 * 109.47771 * 300.00142 * 27 26 25 49 49 H 1.09002 * 109.46838 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.47276 * 299.99698 * 28 23 22 51 51 H 1.08997 * 109.47726 * 60.00389 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5203 0.0005 5 8 0.7036 2.7889 0.0958 6 7 2.7952 3.5094 -0.1044 7 6 2.4914 4.9476 -0.2162 8 6 3.7342 5.5630 -0.9066 9 6 4.8837 4.7339 -0.2754 10 8 5.2511 5.2671 0.9986 11 6 6.0759 4.6881 -1.1960 12 1 6.1585 3.9039 -1.9339 13 6 7.0613 5.6473 -1.0962 14 7 8.1779 5.5165 -1.7785 15 14 6.8101 7.1328 0.0081 16 1 7.3699 6.8494 1.3541 17 1 7.5025 8.3084 -0.5784 18 1 5.3584 7.4218 0.1266 19 6 4.2548 3.3332 -0.1201 20 6 3.6590 0.6500 0.0057 21 7 3.6341 -0.6542 0.0038 22 7 2.3018 -1.0821 -0.0033 23 6 1.8503 -2.4757 -0.0068 24 6 2.3735 -3.1845 1.2441 25 6 1.9024 -4.6402 1.2402 26 6 2.4376 -5.3460 -0.0073 27 6 1.9143 -4.6373 -1.2582 28 6 2.3850 -3.1819 -1.2542 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8899 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 1.6026 5.1012 -0.8281 33 1 2.3502 5.3835 0.7728 34 1 3.6940 5.4166 -1.9860 35 1 3.8343 6.6201 -0.6608 36 1 6.0124 4.8293 1.4034 37 1 8.8710 6.1915 -1.7086 38 1 4.5836 2.8808 0.8154 39 1 4.5430 2.7022 -0.9609 40 1 4.5449 1.2678 0.0109 41 1 0.7607 -2.5047 -0.0117 42 1 3.4631 -3.1556 1.2492 43 1 1.9926 -2.6814 2.1329 44 1 0.8128 -4.6694 1.2350 45 1 2.2748 -5.1449 2.1317 46 1 2.1016 -6.3829 -0.0103 47 1 3.5272 -5.3167 -0.0021 48 1 0.8247 -4.6666 -1.2635 49 1 2.2952 -5.1405 -2.1469 50 1 2.0122 -2.6771 -2.1455 51 1 3.4745 -3.1531 -1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848435.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:07:38 Heat of formation + Delta-G solvation = -37.200474 kcal Electronic energy + Delta-G solvation = -31619.558557 eV Core-core repulsion = 27519.098643 eV Total energy + Delta-G solvation = -4100.459914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.66744 -40.85921 -39.34397 -38.90677 -36.32904 -34.43445 -34.40775 -33.04867 -32.07655 -31.82209 -30.44044 -29.44495 -28.32215 -27.08773 -24.72057 -24.23827 -23.63150 -22.57681 -21.78187 -21.23248 -20.45252 -20.04323 -19.44590 -18.26107 -17.36860 -17.15188 -16.85598 -16.63578 -16.44416 -16.11052 -16.02663 -15.26915 -15.16345 -15.13052 -14.92394 -14.60065 -14.51113 -14.29385 -13.97303 -13.90067 -13.86520 -13.76946 -13.36659 -13.27382 -13.23645 -13.19290 -13.06995 -12.70537 -12.37646 -12.23555 -12.21008 -12.14724 -11.89296 -11.72985 -11.56113 -11.35293 -11.32189 -11.25306 -10.88800 -10.58928 -10.34396 -10.31881 -9.80878 -9.43731 -8.33185 -6.45519 0.46658 1.11558 1.31000 1.49772 1.56572 1.76677 2.10125 2.39952 2.44447 2.98339 3.26983 3.50531 3.54068 3.62275 3.65882 3.78745 3.93675 3.96100 4.00273 4.13640 4.15655 4.16868 4.23869 4.31540 4.38446 4.42662 4.48410 4.48530 4.55233 4.62597 4.69036 4.78787 4.81444 4.88298 4.99146 5.00397 5.02544 5.13402 5.14640 5.15938 5.17654 5.24835 5.26115 5.31499 5.37840 5.46288 5.49547 5.52101 5.93518 6.05373 6.51237 6.58740 6.63175 6.96972 7.21318 7.30898 8.79769 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.002661 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.203090 B =10520.552671 C =11505.241457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.158 3.842 3 C -0.319 4.319 4 C 0.605 3.395 5 O -0.583 6.583 6 N -0.610 5.610 7 C 0.116 3.884 8 C -0.120 4.120 9 C 0.216 3.784 10 O -0.562 6.562 11 C -0.545 4.545 12 H 0.048 0.952 13 C 0.029 3.971 14 N -0.933 5.933 15 Si 0.992 3.008 16 H -0.279 1.279 17 H -0.336 1.336 18 H -0.251 1.251 19 C 0.093 3.907 20 C 0.066 3.934 21 N -0.313 5.313 22 N -0.349 5.349 23 C 0.151 3.849 24 C -0.123 4.123 25 C -0.109 4.109 26 C -0.123 4.123 27 C -0.110 4.110 28 C -0.123 4.123 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.382 0.618 37 H 0.267 0.733 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.199 0.801 41 H 0.130 0.870 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.042 -20.700 5.410 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.024 3.976 3 C -0.334 4.334 4 C 0.397 3.603 5 O -0.466 6.466 6 N -0.342 5.342 7 C -0.006 4.006 8 C -0.159 4.159 9 C 0.176 3.824 10 O -0.371 6.371 11 C -0.583 4.583 12 H 0.067 0.933 13 C -0.172 4.172 14 N -0.570 5.570 15 Si 0.824 3.176 16 H -0.206 1.206 17 H -0.268 1.268 18 H -0.176 1.176 19 C -0.030 4.030 20 C -0.121 4.121 21 N -0.132 5.132 22 N -0.128 5.128 23 C 0.052 3.948 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.161 4.161 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.232 0.768 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.215 0.785 41 H 0.148 0.852 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.360 -21.431 5.298 27.478 hybrid contribution 1.057 1.526 0.126 1.861 sum -15.303 -19.905 5.424 25.687 Atomic orbital electron populations 1.20756 0.84095 1.05475 1.04954 1.21880 0.96033 0.85861 0.93854 1.19960 0.93680 0.93030 1.26684 1.17087 0.84085 0.83799 0.75307 1.90642 1.17171 1.84611 1.54189 1.48285 1.07070 1.06973 1.71860 1.22199 0.98198 0.79674 1.00504 1.23050 0.92669 1.00308 0.99835 1.19967 0.92312 0.88817 0.81321 1.86185 1.53243 1.62365 1.35337 1.21370 1.04462 1.13124 1.19369 0.93338 1.25804 0.93774 1.00801 0.96811 1.70072 1.07036 1.36142 1.43760 0.85027 0.78703 0.76593 0.77283 1.20599 1.26807 1.17606 1.22959 0.78979 0.99791 1.01277 1.24851 0.98118 0.92236 0.96858 1.77107 0.97636 1.12938 1.25502 1.48995 1.03219 1.06714 1.53843 1.21888 1.00776 0.74250 0.97918 1.21841 1.01419 0.97220 0.95622 1.21503 1.01982 0.92385 0.98871 1.21603 1.00531 0.99996 0.93956 1.21497 1.02018 0.92347 0.98902 1.21827 1.01325 0.97281 0.95709 0.88518 0.87923 0.89150 0.90575 0.91501 0.90235 0.89896 0.76828 0.92367 0.90442 0.90997 0.78487 0.85241 0.92452 0.91762 0.89830 0.90562 0.89881 0.92819 0.89831 0.90699 0.91992 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.85 9.45 71.24 0.67 -1.18 16 2 C 0.16 4.22 7.00 42.14 0.30 4.51 16 3 C -0.32 -10.48 6.09 -20.15 -0.12 -10.61 16 4 C 0.61 22.33 7.84 86.66 0.68 23.01 16 5 O -0.58 -23.02 15.11 -4.04 -0.06 -23.08 16 6 N -0.61 -22.53 3.33 -815.66 -2.71 -25.24 16 7 C 0.12 4.17 6.88 86.86 0.60 4.76 16 8 C -0.12 -4.71 5.89 31.99 0.19 -4.52 16 9 C 0.22 9.07 0.70 -10.35 -0.01 9.06 16 10 O -0.56 -22.53 8.98 -148.98 -1.34 -23.87 16 11 C -0.55 -27.94 8.73 25.60 0.22 -27.72 16 12 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 13 C 0.03 1.53 5.45 84.66 0.46 1.99 16 14 N -0.93 -54.82 13.96 21.45 0.30 -54.52 16 15 Si 0.99 45.43 24.75 68.60 1.70 47.13 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.34 -16.14 7.11 99.48 0.71 -15.43 16 18 H -0.25 -10.99 5.01 99.48 0.50 -10.49 16 19 C 0.09 3.45 4.35 86.73 0.38 3.83 16 20 C 0.07 2.14 10.45 85.65 0.89 3.04 16 21 N -0.31 -9.61 12.33 -56.27 -0.69 -10.31 16 22 N -0.35 -8.63 3.25 -312.63 -1.02 -9.64 16 23 C 0.15 2.47 2.89 44.99 0.13 2.60 16 24 C -0.12 -1.86 5.46 30.59 0.17 -1.69 16 25 C -0.11 -1.00 5.92 30.59 0.18 -0.82 16 26 C -0.12 -1.13 5.92 30.59 0.18 -0.95 16 27 C -0.11 -1.06 5.92 30.58 0.18 -0.88 16 28 C -0.12 -1.95 5.45 30.58 0.17 -1.78 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 1.23 7.08 -2.39 -0.02 1.21 16 31 H 0.09 2.18 6.41 -2.39 -0.02 2.17 16 32 H 0.08 2.58 8.09 -2.39 -0.02 2.57 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 3.15 8.04 -2.38 -0.02 3.14 16 35 H 0.08 3.24 6.32 -2.39 -0.02 3.22 16 36 H 0.38 13.69 8.42 -74.06 -0.62 13.07 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.08 2.64 7.05 -2.39 -0.02 2.63 16 39 H 0.07 2.77 6.24 -2.39 -0.01 2.75 16 40 H 0.20 6.31 4.51 -2.91 -0.01 6.30 16 41 H 0.13 1.39 6.64 -2.39 -0.02 1.38 16 42 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.84 387.95 1.56 -67.28 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.12 Total: 29.59 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 5.27 Total: 2.67 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -4.12 Total: -99.72 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -1.40 Total: -46.95 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.70 Total: 47.13 kcal Total: -68.84 1.56 -67.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848435.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.078 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds