Wall clock time and date at job start Wed Apr 1 2020 07:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38047 * 126.29069 * 2 1 4 4 C 1.47428 * 126.41256 * 0.02562 * 3 2 1 5 5 O 1.21604 * 120.00432 * 40.39375 * 4 3 2 6 6 N 1.34780 * 119.99826 * 220.38858 * 4 3 2 7 7 C 1.46923 * 120.62923 * 185.35292 * 6 4 3 8 8 C 1.52766 * 109.00720 * 233.58309 * 7 6 4 9 9 C 1.53033 * 109.38561 * 305.59036 * 8 7 6 10 10 O 1.42902 * 109.46211 * 301.21986 * 9 8 7 11 11 C 1.52992 * 109.46187 * 181.25963 * 9 8 7 12 12 C 1.53787 * 113.61649 * 159.06995 * 11 9 8 13 13 C 1.53957 * 87.02119 * 220.04852 * 12 11 9 14 14 C 1.53781 * 113.61625 * 61.45985 * 11 9 8 15 15 C 1.53037 * 109.53862 * 61.23610 * 9 8 7 16 16 C 1.46920 * 120.63010 * 5.63200 * 6 4 3 17 17 C 1.41289 * 107.17121 * 179.97438 * 3 2 1 18 18 N 1.30451 * 108.02201 * 359.97438 * 17 3 2 19 19 N 1.34259 * 126.29019 * 179.97438 * 2 1 3 20 20 C 1.46496 * 125.75655 * 359.74590 * 19 2 1 21 21 C 1.50706 * 109.46801 * 90.00391 * 20 19 2 22 22 H 1.07998 * 120.00175 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99732 * 179.97438 * 21 20 19 24 24 N 1.31515 * 119.99918 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00168 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47071 * 89.99595 * 25 23 21 27 27 H 1.48498 * 109.47311 * 209.99850 * 25 23 21 28 28 H 1.48499 * 109.47073 * 330.00146 * 25 23 21 29 29 H 1.09000 * 109.46608 * 269.99352 * 1 2 3 30 30 H 1.08998 * 109.47517 * 29.98878 * 1 2 3 31 31 H 1.09000 * 109.47242 * 149.99808 * 1 2 3 32 32 H 1.09002 * 109.58987 * 353.41641 * 7 6 4 33 33 H 1.08997 * 109.58678 * 113.84657 * 7 6 4 34 34 H 1.08997 * 109.56044 * 185.55160 * 8 7 6 35 35 H 1.09001 * 109.38264 * 65.51520 * 8 7 6 36 36 H 0.96705 * 113.99893 * 60.05956 * 10 9 8 37 37 H 1.09004 * 112.85058 * 290.26459 * 11 9 8 38 38 H 1.09000 * 113.60826 * 334.56543 * 12 11 9 39 39 H 1.08997 * 113.61447 * 105.46850 * 12 11 9 40 40 H 1.08996 * 113.53406 * 270.81179 * 13 12 11 41 41 H 1.09000 * 113.66824 * 139.92988 * 13 12 11 42 42 H 1.08991 * 113.61594 * 254.53240 * 14 11 9 43 43 H 1.09003 * 113.61242 * 25.43594 * 14 11 9 44 44 H 1.09005 * 109.50462 * 178.68288 * 15 9 8 45 45 H 1.08998 * 109.52682 * 58.60645 * 15 9 8 46 46 H 1.08994 * 109.58886 * 246.15289 * 16 6 4 47 47 H 1.09005 * 109.58804 * 6.58305 * 16 6 4 48 48 H 1.07998 * 125.98780 * 180.02562 * 17 3 2 49 49 H 1.08991 * 109.47212 * 210.00236 * 20 19 2 50 50 H 1.09006 * 109.47119 * 330.00766 * 20 19 2 51 51 H 0.96997 * 119.99911 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.9395 2.8623 0.6834 6 7 2.5340 3.4282 -0.7558 7 6 2.1854 4.8534 -0.6777 8 6 1.8834 5.3694 -2.0835 9 6 3.0672 5.0610 -3.0030 10 8 4.2464 5.6800 -2.4849 11 6 2.7799 5.6050 -4.4038 12 6 4.0439 5.8157 -5.2541 13 6 3.3907 7.1156 -5.7582 14 6 2.5899 7.1304 -4.4453 15 6 3.2769 3.5469 -3.0771 16 6 3.5985 3.0109 -1.6784 17 6 3.6591 0.6499 0.0006 18 7 3.6341 -0.6544 0.0015 19 7 2.3017 -1.0822 0.0005 20 6 1.8501 -2.4758 0.0064 21 6 1.6903 -2.9580 -1.4125 22 1 1.9034 -2.2928 -2.2362 23 6 1.2721 -4.2485 -1.6590 24 7 1.1322 -4.6692 -2.8971 25 14 0.9029 -5.3989 -0.2343 26 1 -0.5270 -5.2726 0.1462 27 1 1.1847 -6.7986 -0.6425 28 1 1.7574 -5.0400 0.9259 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5136 31 1 -0.3634 -0.8900 -0.5139 32 1 1.3058 4.9804 -0.0466 33 1 3.0222 5.4118 -0.2585 34 1 1.7201 6.4466 -2.0496 35 1 0.9887 4.8775 -2.4650 36 1 4.4898 5.3819 -1.5977 37 1 1.9940 5.0529 -4.9193 38 1 4.9449 5.9805 -4.6633 39 1 4.1777 5.0634 -6.0313 40 1 2.7725 6.9765 -6.6450 41 1 4.0885 7.9475 -5.8535 42 1 1.5518 7.4379 -4.5705 43 1 3.0928 7.6553 -3.6331 44 1 4.1053 3.3267 -3.7504 45 1 2.3695 3.0713 -3.4492 46 1 4.5529 3.4160 -1.3425 47 1 3.6510 1.9225 -1.7074 48 1 4.5449 1.2677 0.0012 49 1 2.5865 -3.0941 0.5195 50 1 0.8932 -2.5455 0.5238 51 1 0.8376 -5.5769 -3.0706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884988079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:23:37 Heat of formation + Delta-G solvation = 5.636958 kcal Electronic energy + Delta-G solvation = -31673.553934 eV Core-core repulsion = 27574.951591 eV Total energy + Delta-G solvation = -4098.602343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17102 -40.49129 -38.89016 -37.21333 -35.09100 -33.95465 -32.35083 -31.94587 -31.51029 -31.06269 -28.10924 -27.21372 -26.51136 -25.85343 -23.71349 -23.51223 -22.84058 -21.69618 -20.41282 -19.64898 -19.53583 -18.47127 -17.47931 -17.25140 -16.52596 -15.96304 -15.82655 -15.46518 -15.33642 -15.07947 -14.91575 -14.60810 -14.21669 -13.84763 -13.67175 -13.48422 -13.03561 -12.71932 -12.62326 -12.61739 -12.55511 -12.40345 -12.30424 -12.26051 -12.04237 -11.94324 -11.80898 -11.62933 -11.40106 -11.36950 -11.23760 -10.89375 -10.67807 -10.60088 -10.43070 -10.33707 -10.06967 -9.87023 -9.80372 -9.49850 -8.88772 -8.68981 -8.62414 -7.96157 -6.36955 -4.41861 2.15842 2.69127 2.92141 3.07598 3.14746 3.16681 3.28180 3.57691 3.95990 4.12581 4.23000 4.43307 4.50059 4.60596 4.65315 4.78474 4.87969 4.90144 4.94411 5.00994 5.08358 5.09491 5.17382 5.36235 5.46167 5.49202 5.53943 5.56354 5.62244 5.67689 5.70097 5.72818 5.78310 5.80345 5.81665 5.84754 5.94459 5.95962 6.00838 6.10783 6.21189 6.31630 6.38101 6.41029 6.53940 6.58441 6.98771 7.14696 7.42994 7.49480 7.53296 8.15930 8.24039 8.44588 8.65657 9.17217 10.75135 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.002606 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.960042 B =10740.929355 C =11560.427289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.158 3.842 3 C -0.325 4.325 4 C 0.609 3.391 5 O -0.550 6.550 6 N -0.615 5.615 7 C 0.110 3.890 8 C -0.156 4.156 9 C 0.147 3.853 10 O -0.555 6.555 11 C -0.100 4.100 12 C -0.128 4.128 13 C -0.145 4.145 14 C -0.130 4.130 15 C -0.158 4.158 16 C 0.099 3.901 17 C 0.058 3.942 18 N -0.291 5.291 19 N -0.312 5.312 20 C 0.224 3.776 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.082 3.918 24 N -0.883 5.883 25 Si 0.872 3.128 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.372 0.628 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.104 0.896 48 H 0.178 0.822 49 H 0.055 0.945 50 H 0.048 0.952 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.455 21.319 -0.407 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.022 3.978 3 C -0.340 4.340 4 C 0.400 3.600 5 O -0.428 6.428 6 N -0.349 5.349 7 C -0.013 4.013 8 C -0.195 4.195 9 C 0.106 3.894 10 O -0.362 6.362 11 C -0.118 4.118 12 C -0.166 4.166 13 C -0.183 4.183 14 C -0.167 4.167 15 C -0.197 4.197 16 C -0.024 4.024 17 C -0.128 4.128 18 N -0.111 5.111 19 N -0.089 5.089 20 C 0.106 3.894 21 C -0.584 4.584 22 H 0.100 0.900 23 C -0.123 4.123 24 N -0.519 5.519 25 Si 0.697 3.303 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.221 0.779 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.122 0.878 48 H 0.195 0.805 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.561 20.360 -0.729 20.682 hybrid contribution -0.570 -0.390 0.943 1.169 sum 2.990 19.970 0.214 20.193 Atomic orbital electron populations 1.20503 0.87033 1.04285 1.03382 1.21343 0.94736 0.86384 0.95293 1.19611 0.93368 0.92421 1.28600 1.17407 0.80821 0.83999 0.77802 1.90710 1.28357 1.80709 1.42982 1.47925 1.38190 1.06822 1.41945 1.21435 1.02027 0.80625 0.97200 1.22461 0.99331 1.02096 0.95601 1.20927 0.84501 0.90871 0.93081 1.86480 1.44677 1.68657 1.36416 1.22575 0.99137 0.96592 0.93522 1.22867 0.97912 0.97140 0.98645 1.22837 0.99575 0.98458 0.97385 1.22864 0.99984 0.95723 0.98159 1.22554 1.03737 0.95851 0.97545 1.21937 0.89486 1.02637 0.88314 1.23758 0.96239 0.92338 1.00494 1.77157 0.98078 1.12270 1.23573 1.48846 1.02668 1.07423 1.49939 1.20151 0.95739 0.73361 1.00180 1.21085 1.48130 0.99152 0.90020 0.90024 1.24787 0.94267 0.97395 0.95870 1.69858 1.45048 1.18163 1.18823 0.86915 0.79541 0.81051 0.82755 1.19496 1.20343 1.18757 0.90087 0.90078 0.89558 0.88568 0.91810 0.90042 0.90572 0.77902 0.88450 0.88844 0.91998 0.90611 0.91698 0.91997 0.89465 0.89847 0.90422 0.91576 0.87767 0.80469 0.92684 0.93462 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.36 36.01 0.34 -1.25 16 2 C 0.16 3.07 7.00 -81.60 -0.57 2.50 16 3 C -0.32 -5.69 5.19 -105.07 -0.55 -6.24 16 4 C 0.61 9.82 7.30 -12.52 -0.09 9.73 16 5 O -0.55 -10.24 15.86 5.27 0.08 -10.15 16 6 N -0.61 -7.47 2.98 -174.30 -0.52 -7.99 16 7 C 0.11 1.10 5.99 -3.93 -0.02 1.08 16 8 C -0.16 -1.39 4.93 -26.83 -0.13 -1.53 16 9 C 0.15 1.28 0.62 -90.59 -0.06 1.22 16 10 O -0.56 -4.74 10.98 -35.23 -0.39 -5.13 16 11 C -0.10 -0.85 3.04 -89.81 -0.27 -1.12 16 12 C -0.13 -1.09 7.49 -25.82 -0.19 -1.28 16 13 C -0.15 -1.12 8.09 -25.82 -0.21 -1.33 16 14 C -0.13 -1.03 6.61 -25.91 -0.17 -1.20 16 15 C -0.16 -1.55 5.09 -26.61 -0.14 -1.68 16 16 C 0.10 1.03 5.06 -3.71 -0.02 1.01 16 17 C 0.06 0.98 9.63 -16.98 -0.16 0.81 16 18 N -0.29 -5.98 12.50 30.86 0.39 -5.60 16 19 N -0.31 -6.70 3.56 -57.77 -0.21 -6.91 16 20 C 0.22 5.12 4.85 -5.19 -0.03 5.09 16 21 C -0.55 -14.55 9.94 -34.44 -0.34 -14.90 16 22 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.88 -25.35 13.96 55.43 0.77 -24.58 16 25 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.31 7.74 -51.93 -0.40 0.91 16 31 H 0.09 1.51 7.71 -51.93 -0.40 1.11 16 32 H 0.10 1.13 7.00 -51.93 -0.36 0.76 16 33 H 0.06 0.52 7.03 -51.93 -0.37 0.15 16 34 H 0.08 0.65 7.45 -51.93 -0.39 0.27 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.37 2.54 5.85 45.56 0.27 2.81 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.87 7.02 -51.93 -0.36 0.51 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.74 7.72 -51.93 -0.40 0.34 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 0.54 7.02 -51.93 -0.36 0.17 16 47 H 0.10 1.31 4.80 -51.93 -0.25 1.06 16 48 H 0.18 2.24 7.38 -52.49 -0.39 1.86 16 49 H 0.06 1.27 7.20 -51.93 -0.37 0.89 16 50 H 0.05 1.00 7.06 -51.93 -0.37 0.63 16 51 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -31.20 394.36 -8.86 -40.06 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.55 Total: 6.55 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.71 Total: -6.99 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.43 Total: -45.08 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.30 Total: -15.28 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.20 -8.86 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884988079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.693 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds